Wall clock time and date at job start Tue Mar 31 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38238 * 119.99797 * 2 1 4 4 C 1.38235 * 119.99365 * 180.02562 * 3 2 1 5 5 C 1.38232 * 120.00439 * 0.02562 * 4 3 2 6 6 S 1.76205 * 120.00050 * 179.97438 * 5 4 3 7 7 O 1.42096 * 106.40224 * 336.45816 * 6 5 4 8 8 O 1.42100 * 106.40244 * 203.53442 * 6 5 4 9 9 N 1.65603 * 107.21666 * 89.99543 * 6 5 4 10 10 C 1.46497 * 119.99855 * 65.00310 * 9 6 5 11 11 C 1.53004 * 109.46816 * 164.99848 * 10 9 6 12 12 H 1.08996 * 109.50615 * 304.91817 * 11 10 9 13 13 C 1.53116 * 109.50413 * 64.99909 * 11 10 9 14 14 C 1.53129 * 109.15948 * 177.59524 * 13 11 10 15 15 C 1.53039 * 109.30769 * 302.32233 * 14 13 11 16 16 N 1.46929 * 109.47848 * 59.16423 * 15 14 13 17 17 C 1.46897 * 110.98699 * 174.17791 * 16 15 14 18 18 C 1.50703 * 109.47181 * 59.33330 * 17 16 15 19 19 H 1.07996 * 119.99864 * 5.00315 * 18 17 16 20 20 C 1.37881 * 119.99767 * 185.00847 * 18 17 16 21 21 N 1.31512 * 120.00287 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99792 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46983 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46858 * 119.99650 * 22 20 18 25 25 H 1.48493 * 109.46868 * 239.99891 * 22 20 18 26 26 C 1.46850 * 111.21685 * 298.27993 * 16 15 14 27 27 C 1.38228 * 120.00170 * 0.24817 * 5 4 3 28 28 C 1.38237 * 119.99958 * 180.02562 * 2 1 3 29 29 H 1.08998 * 109.47155 * 90.00053 * 1 2 3 30 30 H 1.09004 * 109.47073 * 210.00105 * 1 2 3 31 31 H 1.09000 * 109.47062 * 329.99436 * 1 2 3 32 32 H 1.07994 * 120.00178 * 0.02562 * 3 2 1 33 33 H 1.08007 * 119.99549 * 179.97438 * 4 3 2 34 34 H 0.97000 * 120.00087 * 244.99898 * 9 6 5 35 35 H 1.08999 * 109.47368 * 44.99966 * 10 9 6 36 36 H 1.09001 * 109.46947 * 284.99386 * 10 9 6 37 37 H 1.08998 * 109.52461 * 57.69410 * 13 11 10 38 38 H 1.09002 * 109.57282 * 297.52784 * 13 11 10 39 39 H 1.08996 * 109.50030 * 62.28526 * 14 13 11 40 40 H 1.08998 * 109.49997 * 182.36235 * 14 13 11 41 41 H 1.09005 * 109.46035 * 179.21349 * 15 14 13 42 42 H 1.08999 * 109.46759 * 299.18495 * 15 14 13 43 43 H 1.08999 * 109.47240 * 179.33547 * 17 16 15 44 44 H 1.09002 * 109.47269 * 299.33294 * 17 16 15 45 45 H 0.96996 * 120.00243 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.46369 * 301.72709 * 26 16 15 47 47 H 1.09003 * 109.45848 * 181.75958 * 26 16 15 48 48 H 1.08000 * 120.00192 * 179.73746 * 27 5 4 49 49 H 1.08001 * 120.00094 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 0.0000 -0.0016 6 16 6.0337 0.0000 -0.0030 7 8 6.4346 1.2499 -0.5472 8 8 6.4345 -1.2496 -0.5482 9 7 6.5251 -0.0006 1.5785 10 6 6.2305 -1.1508 2.4366 11 6 7.0903 -1.0779 3.7001 12 1 8.1413 -1.0035 3.4213 13 6 6.6906 0.1518 4.5202 14 6 7.5136 0.1841 5.8111 15 6 7.2829 -1.1124 6.5909 16 7 7.6808 -2.2593 5.7632 17 6 7.6035 -3.5115 6.5273 18 6 6.1922 -3.7165 7.0145 19 1 5.4123 -3.0329 6.7130 20 6 5.8968 -4.7766 7.8451 21 7 6.8464 -5.6092 8.2119 22 14 4.1475 -5.0302 8.4496 23 1 3.2737 -3.9638 7.8978 24 1 3.6555 -6.3568 7.9986 25 1 4.1231 -4.9713 9.9331 26 6 6.8718 -2.3383 4.5402 27 6 3.5806 -1.1971 -0.0073 28 6 2.1982 -1.1972 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1325 0.0004 33 1 4.1205 2.1325 -0.0010 34 1 7.0081 0.7606 1.9366 35 1 6.4529 -2.0722 1.8984 36 1 5.1762 -1.1371 2.7133 37 1 5.6301 0.0970 4.7656 38 1 6.8846 1.0552 3.9419 39 1 8.5715 0.2781 5.5660 40 1 7.2039 1.0343 6.4188 41 1 7.8785 -1.0980 7.5037 42 1 6.2271 -1.1989 6.8476 43 1 7.8919 -4.3458 5.8878 44 1 8.2786 -3.4582 7.3814 45 1 6.6385 -6.3551 8.7959 46 1 5.8179 -2.4190 4.8065 47 1 7.1689 -3.2147 3.9642 48 1 4.1206 -2.1324 -0.0124 49 1 1.6582 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058330607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:39 Heat of formation + Delta-G solvation = -63.649765 kcal Electronic energy + Delta-G solvation = -29330.588484 eV Core-core repulsion = 25383.559800 eV Total energy + Delta-G solvation = -3947.028684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.65152 -38.76958 -37.36680 -35.98859 -35.68695 -33.40086 -33.27103 -31.68651 -31.39048 -30.63683 -27.66648 -26.77188 -25.35425 -23.86886 -23.21417 -22.26186 -21.91179 -20.73614 -19.71793 -19.16735 -18.25215 -17.48297 -16.56063 -16.30576 -15.80443 -15.64156 -15.25230 -14.80110 -14.67244 -14.50313 -14.28163 -14.15201 -13.95436 -13.89149 -13.48044 -13.26966 -12.76613 -12.73129 -12.68607 -12.50598 -12.43436 -12.28114 -12.19800 -12.10592 -11.69987 -11.50844 -11.42187 -11.10660 -11.01726 -10.97460 -10.65314 -10.49522 -10.39986 -10.13769 -9.84037 -9.81618 -9.65899 -9.46524 -9.40127 -9.36646 -8.46673 -7.19116 -6.05603 -4.15101 0.20067 0.52638 0.97370 2.80756 3.18609 3.22749 3.31216 3.33465 3.62297 4.12318 4.36872 4.37820 4.42408 4.56454 4.74848 4.89173 4.95744 4.98243 5.03429 5.12155 5.23445 5.24529 5.27508 5.28432 5.36849 5.52077 5.55960 5.61257 5.69916 5.74849 5.76639 5.82120 5.97013 6.02403 6.07894 6.09056 6.23977 6.29470 6.42107 6.48646 6.50614 6.67464 6.73450 6.83467 6.88667 7.27352 7.50243 7.87177 8.03979 8.26761 8.29270 8.95808 9.51897 10.99252 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.010139 B = 0.002921 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2760.928990 B = 9583.930746 C =11191.943380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.032 4.032 3 C -0.145 4.145 4 C -0.015 4.015 5 C -0.682 4.682 6 S 2.697 3.303 7 O -0.964 6.964 8 O -0.956 6.956 9 N -1.112 6.112 10 C 0.120 3.880 11 C -0.091 4.091 12 H 0.084 0.916 13 C -0.112 4.112 14 C -0.118 4.118 15 C 0.063 3.937 16 N -0.541 5.541 17 C 0.187 3.813 18 C -0.549 4.549 19 H 0.057 0.943 20 C 0.065 3.935 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.070 3.930 27 C -0.015 4.015 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.139 0.861 34 H 0.418 0.582 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.028 0.972 44 H 0.035 0.965 45 H 0.262 0.738 46 H 0.039 0.961 47 H 0.068 0.932 48 H 0.142 0.858 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 14.321 -16.154 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.032 4.032 3 C -0.164 4.164 4 C -0.034 4.034 5 C -0.769 4.769 6 S 2.787 3.213 7 O -0.954 6.954 8 O -0.946 6.946 9 N -0.874 5.874 10 C -0.006 4.006 11 C -0.112 4.112 12 H 0.102 0.898 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.065 4.065 16 N -0.264 5.264 17 C 0.061 3.939 18 C -0.588 4.588 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.528 5.528 22 Si 0.715 3.285 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.210 1.210 26 C -0.060 4.060 27 C -0.034 4.034 28 C -0.161 4.161 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.254 0.746 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.160 0.840 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.071 14.051 -16.982 23.473 hybrid contribution -2.472 -0.102 1.241 2.768 sum -10.543 13.949 -15.741 23.526 Atomic orbital electron populations 1.20951 0.90595 1.03594 1.02944 1.20298 0.96526 0.93358 0.92999 1.21173 0.94198 0.97978 1.03036 1.20903 0.94686 0.96566 0.91273 1.30952 1.27288 0.99516 1.19107 1.01745 0.73582 0.73558 0.72459 1.93579 1.81527 1.43896 1.76432 1.93596 1.80492 1.44185 1.76288 1.55453 1.72187 1.28729 1.30991 1.21419 0.99687 0.87377 0.92133 1.21431 0.99990 0.96752 0.93009 0.89794 1.21603 1.00032 0.96829 0.96515 1.21633 1.00145 0.97747 0.96036 1.21866 0.99470 0.89630 0.95552 1.62425 1.52377 1.05394 1.06230 1.19754 0.95784 0.85393 0.92954 1.21785 0.95609 1.11548 1.29864 0.92491 1.24964 0.96931 0.95873 0.96015 1.69947 1.32134 1.15464 1.35300 0.86616 0.85140 0.78047 0.78654 1.19933 1.20926 1.20952 1.21812 0.96957 0.95097 0.92087 1.20995 0.94793 0.96744 0.90843 1.21223 0.94245 0.98097 1.02540 0.90366 0.90798 0.90932 0.85130 0.84276 0.74612 0.89909 0.91731 0.92266 0.92754 0.91788 0.92536 0.91763 0.94389 0.95396 0.94707 0.92840 0.94266 0.91399 0.83984 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.03 -0.26 5.88 -104.62 -0.62 -0.88 16 3 C -0.15 -1.22 9.70 -39.58 -0.38 -1.61 16 4 C -0.02 -0.14 9.52 -39.58 -0.38 -0.52 16 5 C -0.68 -7.17 5.95 -39.59 -0.24 -7.40 16 6 S 2.70 30.68 5.74 -107.50 -0.62 30.07 16 7 O -0.96 -12.84 17.28 -57.17 -0.99 -13.83 16 8 O -0.96 -13.58 16.75 -57.17 -0.96 -14.54 16 9 N -1.11 -11.27 5.88 -10.61 -0.06 -11.33 16 10 C 0.12 1.38 5.62 -4.04 -0.02 1.36 16 11 C -0.09 -1.24 2.46 -90.54 -0.22 -1.46 16 12 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.11 -1.43 5.13 -26.60 -0.14 -1.56 16 14 C -0.12 -1.68 6.09 -26.64 -0.16 -1.84 16 15 C 0.06 1.18 5.04 -3.79 -0.02 1.16 16 16 N -0.54 -11.06 4.86 -236.04 -1.15 -12.21 16 17 C 0.19 4.68 5.12 -4.98 -0.03 4.65 16 18 C -0.55 -14.63 7.72 -34.44 -0.27 -14.89 16 19 H 0.06 1.50 5.86 -52.49 -0.31 1.19 16 20 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 22 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 23 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.07 1.25 4.40 -3.83 -0.02 1.23 16 27 C -0.01 -0.15 9.52 -39.58 -0.38 -0.52 16 28 C -0.14 -1.28 9.70 -39.58 -0.38 -1.67 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 31 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 32 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 1.13 7.62 -52.48 -0.40 0.73 16 34 H 0.42 3.61 7.44 -34.47 -0.26 3.35 16 35 H 0.08 0.96 7.75 -51.93 -0.40 0.56 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.56 6.97 -51.93 -0.36 0.20 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 42 H 0.04 0.77 6.73 -51.93 -0.35 0.42 16 43 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 44 H 0.03 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.04 0.75 6.86 -51.93 -0.36 0.40 16 47 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 48 H 0.14 1.32 7.61 -52.49 -0.40 0.92 16 49 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -33.19 400.69 -12.87 -46.06 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -7.87 Total: 1.43 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -2.98 Total: -22.61 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.47 Total: -48.56 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -1.95 Total: -28.36 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 30.68 SS G_CDS: -0.62 Total: 30.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.19 -12.87 -46.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058330607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.589 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds