Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 S 1.81396 * 109.47320 * 179.97438 * 10 9 7 12 12 C 1.76199 * 103.00267 * 179.97438 * 11 10 9 13 13 N 1.31089 * 126.00576 * 0.02562 * 12 11 10 14 14 N 1.40106 * 107.98676 * 179.97438 * 13 12 11 15 15 C 1.31027 * 108.00768 * 0.02562 * 14 13 12 16 16 N 1.38895 * 125.98848 * 179.97438 * 15 14 13 17 17 C 1.48532 * 111.00121 * 242.58261 * 16 15 14 18 18 C 1.54941 * 103.22741 * 159.72342 * 17 16 15 19 19 C 1.54598 * 102.91939 * 322.57966 * 18 17 16 20 20 C 1.47904 * 111.00084 * 359.97438 * 16 15 14 21 21 N 1.36603 * 108.02053 * 359.76906 * 15 14 13 22 22 C 1.46498 * 126.00390 * 180.25914 * 21 15 14 23 23 C 1.52994 * 109.47566 * 270.15595 * 22 21 15 24 24 H 1.09003 * 110.27602 * 54.29200 * 23 22 21 25 25 C 1.54943 * 110.31193 * 176.38667 * 23 22 21 26 26 C 1.55421 * 100.89467 * 155.28684 * 25 23 22 27 27 C 1.54389 * 102.30791 * 325.98935 * 26 25 23 28 28 O 1.43241 * 107.58516 * 21.28412 * 27 26 25 29 29 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 31 31 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 32 32 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 33 33 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 34 34 H 1.09006 * 110.66289 * 278.15174 * 17 16 15 35 35 H 1.08994 * 110.67130 * 41.28377 * 17 16 15 36 36 H 1.09002 * 110.72114 * 204.22777 * 18 17 16 37 37 H 1.08996 * 110.87816 * 81.01391 * 18 17 16 38 38 H 1.09000 * 110.30942 * 263.04564 * 19 18 17 39 39 H 1.08997 * 110.38733 * 140.91671 * 19 18 17 40 40 H 1.09004 * 109.91362 * 333.50474 * 20 16 15 41 41 H 1.08994 * 109.92014 * 94.60349 * 20 16 15 42 42 H 1.09006 * 109.46776 * 30.15052 * 22 21 15 43 43 H 1.09004 * 109.47570 * 150.14782 * 22 21 15 44 44 H 1.08999 * 111.12435 * 273.27712 * 25 23 22 45 45 H 1.08999 * 111.12795 * 37.44063 * 25 23 22 46 46 H 1.09001 * 110.87961 * 207.75621 * 26 25 23 47 47 H 1.09001 * 110.93365 * 84.24925 * 26 25 23 48 48 H 1.09003 * 109.82900 * 261.77407 * 27 26 25 49 49 H 1.08995 * 109.90264 * 140.84225 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 16 1.3381 -5.2331 -0.0168 12 6 2.6266 -6.4348 -0.0229 13 7 3.9134 -6.1849 -0.0221 14 7 4.5922 -7.4106 -0.0275 15 6 3.6983 -8.3686 -0.0319 16 7 3.9633 -9.7320 -0.0385 17 6 3.4378 -10.3704 -1.2724 18 6 4.2490 -11.6874 -1.3633 19 6 5.6526 -11.2632 -0.8733 20 6 5.4198 -9.9890 -0.0406 21 7 2.4603 -7.7914 -0.0243 22 6 1.1790 -8.5017 -0.0205 23 6 0.7280 -8.7479 -1.4616 24 1 1.5106 -9.2619 -2.0197 25 6 -0.5803 -9.5778 -1.4813 26 6 -1.1727 -9.1597 -2.8560 27 6 -0.7247 -7.6869 -2.9731 28 8 0.3955 -7.5044 -2.0992 29 1 -0.4850 0.8401 -0.0004 30 1 0.6242 -2.5609 0.8844 31 1 0.6244 -2.5529 -0.8956 32 1 2.8718 -3.6005 -0.9002 33 1 2.8717 -3.6084 0.8798 34 1 2.3728 -10.5807 -1.1731 35 1 3.6273 -9.7411 -2.1419 36 1 4.2913 -12.0441 -2.3924 37 1 3.8262 -12.4499 -0.7093 38 1 6.3005 -11.0470 -1.7228 39 1 6.0908 -12.0454 -0.2534 40 1 5.9445 -9.1480 -0.4942 41 1 5.7719 -10.1393 0.9799 42 1 1.2946 -9.4567 0.4922 43 1 0.4314 -7.9000 0.4965 44 1 -0.3680 -10.6466 -1.4521 45 1 -1.2417 -9.2881 -0.6649 46 1 -2.2601 -9.2350 -2.8496 47 1 -0.7486 -9.7593 -3.6615 48 1 -1.5392 -7.0276 -2.6728 49 1 -0.4320 -7.4686 -4.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058370156.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = 41.459165 kcal Electronic energy + Delta-G solvation = -29607.688168 eV Core-core repulsion = 25697.510101 eV Total energy + Delta-G solvation = -3910.178067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.97293 -39.59745 -39.01367 -34.64140 -33.67553 -32.79498 -32.41222 -30.87221 -30.21827 -29.48076 -28.95924 -25.94587 -25.22699 -23.18345 -22.67182 -22.18666 -21.90639 -21.25460 -20.79780 -19.99413 -17.90991 -17.12035 -16.64545 -16.56590 -16.45391 -16.34241 -15.48761 -15.44438 -14.93249 -14.47300 -14.32190 -13.88737 -13.74884 -13.63961 -13.52297 -13.28901 -13.01358 -12.76894 -12.66770 -12.13717 -12.12330 -11.95749 -11.82635 -11.68636 -11.63285 -11.50056 -11.16501 -11.06814 -11.02425 -10.96162 -10.75657 -10.63592 -10.43124 -10.10411 -9.90695 -9.85998 -9.66039 -9.51221 -9.11935 -8.88040 -8.39583 -7.14691 -6.04484 -4.08013 1.43826 1.94802 2.45101 2.62714 2.93672 3.35243 3.38516 3.42781 3.44481 3.55928 4.07044 4.08692 4.21428 4.30728 4.45530 4.50717 4.51065 4.56691 4.77252 4.87274 4.88944 4.94286 4.97790 5.01877 5.17129 5.22920 5.29658 5.31752 5.33808 5.37498 5.41474 5.46514 5.54324 5.59794 5.62997 5.70587 5.79650 5.80559 6.02620 6.07722 6.22597 6.27924 6.30268 6.74918 6.83025 7.14205 7.53485 7.60691 7.91844 8.24553 8.28894 8.96292 9.55768 11.06481 Molecular weight = 352.17amu Principal moments of inertia in cm(-1) A = 0.012190 B = 0.002838 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.330985 B = 9864.804911 C =11725.379275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.060 0.940 9 C 0.039 3.961 10 C -0.078 4.078 11 S -0.016 6.016 12 C 0.233 3.767 13 N -0.320 5.320 14 N -0.344 5.344 15 C 0.381 3.619 16 N -0.437 5.437 17 C 0.031 3.969 18 C -0.121 4.121 19 C -0.131 4.131 20 C 0.045 3.955 21 N -0.482 5.482 22 C 0.106 3.894 23 C 0.055 3.945 24 H 0.076 0.924 25 C -0.148 4.148 26 C -0.153 4.153 27 C 0.048 3.952 28 O -0.355 6.355 29 H 0.263 0.737 30 H 0.027 0.973 31 H 0.028 0.972 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.363 -29.244 -4.531 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.226 4.226 11 S 0.214 5.786 12 C -0.148 4.148 13 N -0.155 5.155 14 N -0.180 5.180 15 C 0.017 3.983 16 N -0.162 5.162 17 C -0.096 4.096 18 C -0.159 4.159 19 C -0.169 4.169 20 C -0.082 4.082 21 N -0.184 5.184 22 C -0.018 4.018 23 C -0.003 4.003 24 H 0.093 0.907 25 C -0.186 4.186 26 C -0.191 4.191 27 C -0.028 4.028 28 O -0.274 6.274 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.298 -28.516 -4.014 28.799 hybrid contribution 0.714 0.448 -0.637 1.057 sum 0.416 -28.069 -4.651 28.454 Atomic orbital electron populations 1.69958 1.06057 1.27002 1.50138 1.24993 0.94914 0.99289 0.94989 0.86553 0.79498 0.82560 0.78820 1.20085 1.21221 1.20066 1.21034 0.93215 0.89833 1.51655 0.92153 1.18935 0.93358 0.89166 0.98555 1.24062 1.02310 0.90841 1.05408 1.85647 1.04658 0.97086 1.91238 1.26770 0.99565 0.86192 1.02232 1.78290 1.00035 1.13747 1.23391 1.77948 1.21757 0.94260 1.24005 1.22487 0.82829 0.91611 1.01400 1.61642 1.15439 1.02881 1.36209 1.23608 1.00450 0.95525 0.89997 1.22490 0.94978 0.96332 1.02095 1.22444 0.97382 0.97150 0.99933 1.22907 0.84620 0.98371 1.02260 1.45918 1.06372 1.04607 1.61523 1.22130 0.83765 0.98862 0.97057 1.23606 0.97297 0.86584 0.92860 0.90653 1.23268 0.96117 1.00555 0.98640 1.23126 1.02167 0.96686 0.97113 1.23168 0.89414 0.95653 0.94611 1.88696 1.49304 1.29311 1.60057 0.92741 0.95430 0.95330 0.89912 0.90010 0.89120 0.92377 0.90236 0.90109 0.90807 0.90269 0.90278 0.89197 0.87334 0.87557 0.89639 0.89562 0.89724 0.90653 0.90667 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.27 16 9 C 0.04 1.02 4.98 -27.88 -0.14 0.89 16 10 C -0.08 -1.74 5.52 37.16 0.20 -1.53 16 11 S -0.02 -0.31 20.97 -107.50 -2.25 -2.56 16 12 C 0.23 4.40 8.10 -88.37 -0.72 3.68 16 13 N -0.32 -6.79 12.29 30.67 0.38 -6.42 16 14 N -0.34 -6.56 11.15 30.38 0.34 -6.22 16 15 C 0.38 5.89 7.04 -318.44 -2.24 3.65 16 16 N -0.44 -4.97 5.27 -170.45 -0.90 -5.86 16 17 C 0.03 0.26 4.77 -1.90 -0.01 0.25 16 18 C -0.12 -0.71 7.06 -24.87 -0.18 -0.88 16 19 C -0.13 -0.87 6.93 -25.38 -0.18 -1.05 16 20 C 0.05 0.46 6.47 -2.75 -0.02 0.44 16 21 N -0.48 -7.36 2.76 -117.47 -0.32 -7.69 16 22 C 0.11 1.16 4.78 -4.05 -0.02 1.14 16 23 C 0.06 0.54 3.08 -25.71 -0.08 0.46 16 24 H 0.08 0.72 5.23 -51.93 -0.27 0.45 16 25 C -0.15 -0.93 6.58 -24.42 -0.16 -1.09 16 26 C -0.15 -0.99 7.02 -24.72 -0.17 -1.16 16 27 C 0.05 0.47 7.80 37.89 0.30 0.77 16 28 O -0.35 -4.62 10.53 -35.23 -0.37 -4.99 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 1.89 8.14 -51.92 -0.42 1.47 16 33 H 0.08 1.85 8.14 -51.92 -0.42 1.43 16 34 H 0.09 0.62 5.60 -51.93 -0.29 0.33 16 35 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.98 6.83 -51.93 -0.35 0.63 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.11 0.92 7.85 -51.93 -0.41 0.51 16 43 H 0.11 1.20 7.72 -51.93 -0.40 0.80 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.52 8.06 -51.93 -0.42 0.10 16 46 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 400.90 15.07 6.04 6.04 Total: -1.00 -34.39 400.90 -13.20 -47.59 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.01 Total: -3.02 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -3.82 Total: -7.81 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.23 Total: -52.00 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.37 Total: -4.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.25 Total: -2.56 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.39 -13.20 -47.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058370156.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.046 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds