Wall clock time and date at job start Tue Mar 31 2020 06:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35795 * 117.00204 * 2 1 4 4 C 1.38894 * 119.89823 * 0.02562 * 3 2 1 5 5 C 1.37718 * 120.17924 * 179.97438 * 4 3 2 6 6 C 1.40032 * 119.96885 * 0.02562 * 5 4 3 7 7 C 1.46874 * 120.10203 * 179.97438 * 6 5 4 8 8 C 1.35275 * 119.99699 * 0.02562 * 7 6 5 9 9 C 1.41745 * 119.99915 * 180.02562 * 8 7 6 10 10 O 1.21754 * 119.99984 * 359.97438 * 9 8 7 11 11 C 1.47936 * 119.99966 * 179.97438 * 9 8 7 12 12 C 1.40040 * 120.55928 * 180.02562 * 11 9 8 13 13 C 1.38338 * 118.28424 * 179.97438 * 12 11 9 14 14 C 1.38365 * 119.30915 * 0.02562 * 13 12 11 15 15 N 1.31928 * 121.08590 * 359.97438 * 14 13 12 16 16 C 1.31694 * 121.87597 * 359.97438 * 15 14 13 17 17 C 1.40037 * 119.80291 * 0.25755 * 6 5 4 18 18 C 1.38059 * 119.81727 * 359.48622 * 17 6 5 19 19 O 1.35998 * 119.98612 * 180.27402 * 18 17 6 20 20 C 1.42898 * 116.99959 * 0.21691 * 19 18 17 21 21 C 1.52999 * 109.46903 * 180.02562 * 20 19 18 22 22 C 1.50698 * 109.46962 * 180.02562 * 21 20 19 23 23 H 1.07999 * 120.00507 * 359.97438 * 22 21 20 24 24 C 1.37881 * 119.99993 * 179.97438 * 22 21 20 25 25 N 1.31513 * 119.99986 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99963 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47194 * 90.00069 * 26 24 22 28 28 H 1.48502 * 109.47256 * 209.99935 * 26 24 22 29 29 H 1.48496 * 109.47378 * 330.00124 * 26 24 22 30 30 H 1.08997 * 109.47148 * 59.99391 * 1 2 3 31 31 H 1.09000 * 109.47328 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46853 * 299.99740 * 1 2 3 33 33 H 1.07996 * 119.91324 * 359.97438 * 4 3 2 34 34 H 1.07995 * 120.01356 * 180.02562 * 5 4 3 35 35 H 1.07991 * 120.00255 * 180.02562 * 7 6 5 36 36 H 1.08004 * 120.00250 * 359.97438 * 8 7 6 37 37 H 1.07998 * 120.85587 * 359.95939 * 12 11 9 38 38 H 1.08006 * 120.34438 * 180.02562 * 13 12 11 39 39 H 1.08000 * 119.45461 * 180.02562 * 14 13 12 40 40 H 1.08003 * 119.71537 * 180.02562 * 16 15 14 41 41 H 1.07996 * 120.09810 * 179.74419 * 17 6 5 42 42 H 1.08998 * 109.47341 * 299.99894 * 20 19 18 43 43 H 1.08995 * 109.47282 * 60.00201 * 20 19 18 44 44 H 1.09001 * 109.47436 * 299.99959 * 21 20 19 45 45 H 1.08998 * 109.47592 * 60.00016 * 21 20 19 46 46 H 0.97004 * 119.99858 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 1.2871 2.3735 0.0005 5 6 1.9064 3.6036 0.0011 6 6 3.3044 3.6829 0.0005 7 6 3.9679 4.9933 0.0005 8 6 3.2282 6.1258 0.0016 9 6 3.8684 7.3905 0.0010 10 8 5.0841 7.4573 0.0001 11 6 3.0595 8.6291 0.0016 12 6 3.6798 9.8846 0.0005 13 6 2.8780 11.0119 0.0006 14 6 1.5022 10.8645 0.0022 15 7 0.9453 9.6686 0.0032 16 6 1.6654 8.5660 0.0022 17 6 4.0682 2.5092 -0.0060 18 6 3.4386 1.2805 -0.0012 19 8 4.1770 0.1384 -0.0019 20 6 5.5984 0.2849 -0.0029 21 6 6.2536 -1.0978 -0.0042 22 6 7.7526 -0.9433 -0.0047 23 1 8.1940 0.0424 -0.0046 24 6 8.5608 -2.0604 -0.0053 25 7 8.0234 -3.2608 -0.0050 26 14 10.4189 -1.8689 -0.0067 27 1 10.9123 -1.8183 1.3931 28 1 11.0351 -3.0243 -0.7072 29 1 10.7866 -0.6121 -0.7068 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2088 2.3134 0.0005 34 1 1.3140 4.5066 0.0019 35 1 5.0462 5.0526 -0.0003 36 1 2.1498 6.0666 0.0020 37 1 4.7564 9.9705 -0.0001 38 1 3.3213 11.9968 -0.0006 39 1 0.8740 11.7430 0.0018 40 1 1.1729 7.6048 0.0027 41 1 5.1467 2.5648 -0.0106 42 1 5.9065 0.8333 -0.8930 43 1 5.9079 0.8331 0.8869 44 1 5.9455 -1.6467 0.8857 45 1 5.9441 -1.6457 -0.8942 46 1 8.5920 -4.0467 -0.0051 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064367216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:30 Heat of formation + Delta-G solvation = -33.990350 kcal Electronic energy + Delta-G solvation = -28583.962573 eV Core-core repulsion = 24405.057405 eV Total energy + Delta-G solvation = -4178.905168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.92466 -40.47663 -39.21444 -38.32531 -37.23850 -33.84402 -33.29970 -32.95550 -32.11439 -30.76602 -30.16619 -29.10385 -27.39041 -25.74392 -25.07027 -24.13657 -23.35527 -22.58950 -21.30276 -20.61954 -19.32858 -18.57377 -17.98695 -17.11215 -17.04397 -16.58807 -16.21172 -15.99227 -15.89895 -15.34665 -15.10044 -15.05174 -14.82668 -14.62800 -14.55573 -14.31631 -13.96515 -13.90710 -13.58170 -12.98139 -12.91820 -12.72262 -12.42265 -12.31713 -12.08777 -11.80458 -11.74983 -11.47641 -11.16129 -10.92523 -10.87066 -10.60402 -10.38260 -10.37885 -10.04232 -9.84413 -9.82560 -9.67843 -9.65376 -9.30295 -8.60210 -8.44380 -7.59143 -6.09971 -4.14741 -0.16664 0.52906 0.76788 1.32758 1.79170 2.78941 3.21924 3.27973 3.33906 3.36634 3.46206 3.62424 3.68297 3.75873 3.98070 4.30514 4.40102 4.42527 4.48758 4.52768 4.63724 4.83174 4.86583 4.93168 5.03226 5.05044 5.12593 5.18758 5.21739 5.26450 5.27954 5.39910 5.55259 5.56910 5.61130 5.81404 5.90594 5.99575 6.00375 6.09335 6.11147 6.20773 6.45179 6.55681 6.66560 7.15954 7.26148 7.41168 7.51455 7.64166 7.79412 8.01884 8.23265 8.90802 9.49579 11.01435 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.009596 B = 0.002025 C = 0.001675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.239857 B =13822.010615 C =16713.502077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.115 3.885 4 C -0.184 4.184 5 C -0.095 4.095 6 C -0.096 4.096 7 C 0.034 3.966 8 C -0.272 4.272 9 C 0.432 3.568 10 O -0.464 6.464 11 C -0.208 4.208 12 C -0.023 4.023 13 C -0.184 4.184 14 C 0.121 3.879 15 N -0.492 5.492 16 C 0.144 3.856 17 C -0.146 4.146 18 C 0.114 3.886 19 O -0.302 6.302 20 C 0.062 3.938 21 C 0.026 3.974 22 C -0.527 4.527 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.888 5.888 26 Si 0.899 3.101 27 H -0.279 1.279 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.141 0.859 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.145 0.855 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.190 24.107 0.008 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.069 3.931 4 C -0.203 4.203 5 C -0.113 4.113 6 C -0.097 4.097 7 C 0.016 3.984 8 C -0.291 4.291 9 C 0.315 3.685 10 O -0.344 6.344 11 C -0.211 4.211 12 C -0.049 4.049 13 C -0.204 4.204 14 C -0.036 4.036 15 N -0.201 5.201 16 C -0.014 4.014 17 C -0.165 4.165 18 C 0.067 3.933 19 O -0.215 6.215 20 C -0.012 4.012 21 C -0.011 4.011 22 C -0.565 4.565 23 H 0.077 0.923 24 C -0.142 4.142 25 N -0.526 5.526 26 Si 0.726 3.274 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.197 1.197 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.154 0.846 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.159 0.841 39 H 0.177 0.823 40 H 0.182 0.818 41 H 0.162 0.838 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.047 0.953 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.408 23.476 0.003 29.833 hybrid contribution 1.712 0.453 0.009 1.771 sum -16.697 23.929 0.012 29.178 Atomic orbital electron populations 1.23098 0.78730 1.04138 1.01028 1.86230 1.20853 1.25847 1.88042 1.18640 0.89495 0.85224 0.99733 1.20931 0.99890 0.91306 1.08145 1.20994 0.93255 0.97137 0.99944 1.18651 0.93030 0.92050 1.05957 1.22712 1.00473 0.90696 0.84546 1.22287 1.01474 0.93002 1.12312 1.18992 0.88155 0.88495 0.72891 1.90683 1.15741 1.89857 1.38088 1.21620 0.96151 0.96072 1.07248 1.21868 1.01504 0.91165 0.90334 1.22193 0.95161 0.99956 1.03052 1.23046 0.92984 0.95514 0.92020 1.67766 1.40732 0.98700 1.12875 1.23189 0.89709 0.97559 0.90946 1.21426 1.00923 0.90298 1.03872 1.18323 0.88571 0.87165 0.99262 1.86310 1.21263 1.26765 1.87189 1.23400 0.74623 1.03532 0.99648 1.19113 0.94232 0.88751 0.98993 1.20966 0.90284 0.92938 1.52323 0.92340 1.24989 0.99132 0.95146 0.94909 1.69979 1.35471 0.97569 1.49624 0.86492 0.84895 0.77804 0.78224 1.20499 1.21060 1.19745 0.92720 0.88112 0.92729 0.84578 0.85253 0.84531 0.84936 0.83703 0.84082 0.82250 0.81784 0.83754 0.93028 0.93024 0.95324 0.95315 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.30 -4.44 10.26 -33.77 -0.35 -4.78 16 3 C 0.12 1.70 6.71 -38.88 -0.26 1.44 16 4 C -0.18 -2.03 9.01 -39.53 -0.36 -2.39 16 5 C -0.10 -0.98 9.40 -39.10 -0.37 -1.35 16 6 C -0.10 -1.16 5.87 -105.06 -0.62 -1.78 16 7 C 0.03 0.37 9.42 -37.14 -0.35 0.02 16 8 C -0.27 -2.53 8.74 -39.30 -0.34 -2.87 16 9 C 0.43 4.58 6.91 -34.27 -0.24 4.34 16 10 O -0.46 -6.29 16.19 5.14 0.08 -6.21 16 11 C -0.21 -1.87 5.89 -104.76 -0.62 -2.49 16 12 C -0.02 -0.18 9.72 -38.87 -0.38 -0.56 16 13 C -0.18 -1.11 10.10 -39.50 -0.40 -1.51 16 14 C 0.12 0.79 11.17 -17.46 -0.20 0.59 16 15 N -0.49 -4.23 10.35 -12.90 -0.13 -4.37 16 16 C 0.14 1.15 10.61 -17.12 -0.18 0.97 16 17 C -0.15 -2.14 8.78 -38.97 -0.34 -2.48 16 18 C 0.11 1.94 6.69 -39.19 -0.26 1.67 16 19 O -0.30 -6.23 9.91 -34.40 -0.34 -6.57 16 20 C 0.06 1.31 4.68 37.16 0.17 1.48 16 21 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 22 C -0.53 -14.65 9.11 -34.44 -0.31 -14.96 16 23 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 26 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 30 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.40 7.65 -51.93 -0.40 0.01 16 33 H 0.14 1.08 6.27 -52.49 -0.33 0.75 16 34 H 0.13 0.91 6.15 -52.49 -0.32 0.59 16 35 H 0.14 1.54 7.45 -52.49 -0.39 1.15 16 36 H 0.13 0.87 4.27 -52.48 -0.22 0.65 16 37 H 0.15 1.10 7.74 -52.49 -0.41 0.69 16 38 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 39 H 0.16 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.17 0.92 6.22 -52.48 -0.33 0.59 16 41 H 0.14 2.05 6.28 -52.49 -0.33 1.72 16 42 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 43 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 395.88 15.07 5.97 5.97 Total: -1.00 -34.43 395.88 -8.93 -43.36 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.57 Total: -1.51 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -4.30 Total: -16.49 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.60 Total: -30.06 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.60 Total: -17.56 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.43 -8.93 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064367216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.372 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds