Wall clock time and date at job start Tue Mar 31 2020 05:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31604 * 1 3 3 Si 1.86808 * 120.00049 * 2 1 4 4 H 1.48498 * 109.47031 * 269.99770 * 3 2 1 5 5 H 1.48500 * 109.46999 * 29.99861 * 3 2 1 6 6 H 1.48500 * 109.47040 * 150.00044 * 3 2 1 7 7 C 1.38534 * 120.00209 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00514 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99697 * 0.02562 * 7 2 1 10 10 N 1.40171 * 126.21938 * 0.02562 * 9 7 2 11 11 C 1.31994 * 107.74345 * 179.97438 * 10 9 7 12 12 C 1.41190 * 131.95604 * 180.02562 * 11 10 9 13 13 C 1.35994 * 119.35947 * 179.97438 * 12 11 10 14 14 C 1.40654 * 119.75411 * 0.02562 * 13 12 11 15 15 S 1.76209 * 119.75127 * 179.97438 * 14 13 12 16 16 O 1.42105 * 106.39915 * 203.54420 * 15 14 13 17 17 O 1.42099 * 106.40022 * 336.46176 * 15 14 13 18 18 N 1.65594 * 107.21569 * 90.00239 * 15 14 13 19 19 C 1.46925 * 120.63385 * 269.71753 * 18 15 14 20 20 C 1.53624 * 108.54534 * 126.37058 * 19 18 15 21 21 C 1.53040 * 109.24098 * 54.85855 * 20 19 18 22 22 C 1.53044 * 109.53683 * 298.51400 * 21 20 19 23 23 C 1.46927 * 120.62957 * 90.00060 * 18 15 14 24 24 C 1.34777 * 120.49650 * 359.97438 * 14 13 12 25 25 N 1.37200 * 120.67989 * 0.04444 * 24 14 13 26 26 C 1.34804 * 126.21400 * 179.97438 * 9 7 2 27 27 O 1.21716 * 125.98498 * 359.73625 * 26 9 7 28 28 H 0.97004 * 120.00052 * 0.02562 * 1 2 3 29 29 H 1.08004 * 120.32026 * 0.02562 * 12 11 10 30 30 H 1.07997 * 120.12542 * 180.02562 * 13 12 11 31 31 H 1.08996 * 109.59047 * 246.20680 * 19 18 15 32 32 H 1.09006 * 109.58110 * 6.62599 * 19 18 15 33 33 H 1.09007 * 109.62970 * 294.86638 * 20 19 18 34 34 H 1.09001 * 109.43141 * 174.73233 * 20 19 18 35 35 H 1.08996 * 109.45569 * 178.49439 * 21 20 19 36 36 H 1.08994 * 109.45745 * 58.53177 * 21 20 19 37 37 H 1.09006 * 109.49514 * 301.40908 * 22 21 20 38 38 H 1.08998 * 109.49271 * 181.32079 * 22 21 20 39 39 H 1.08997 * 109.58673 * 353.37314 * 23 18 15 40 40 H 1.09006 * 109.58555 * 113.79996 * 23 18 15 41 41 H 1.07991 * 119.66073 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0088 -1.1997 0.0005 8 1 3.0887 -1.1998 0.0010 9 7 1.3240 -2.3856 0.0005 10 7 -0.0694 -2.5374 -0.0005 11 6 -0.3331 -3.8308 -0.0007 12 6 -1.5505 -4.5459 -0.0020 13 6 -1.5251 -5.9056 -0.0024 14 6 -0.2912 -6.5807 -0.0009 15 16 -0.2583 -8.3425 -0.0007 16 8 0.9981 -8.7202 0.5454 17 8 -1.5010 -8.7669 0.5423 18 7 -0.2472 -8.8326 -1.5824 19 6 -1.5061 -9.0838 -2.2972 20 6 -1.5060 -8.2571 -3.5920 21 6 -0.2486 -8.5857 -4.4001 22 6 0.9937 -8.2100 -3.5891 23 6 1.0218 -9.0306 -2.2959 24 6 0.8663 -5.8901 0.0004 25 7 0.8629 -4.5181 0.0012 26 6 1.8677 -3.6192 0.0005 27 8 3.0574 -3.8764 -0.0040 28 1 -0.4850 0.8401 -0.0004 29 1 -2.4929 -4.0182 -0.0036 30 1 -2.4489 -6.4650 -0.0038 31 1 -1.5848 -10.1440 -2.5373 32 1 -2.3473 -8.7854 -1.6714 33 1 -1.5146 -7.1947 -3.3482 34 1 -2.3907 -8.5032 -4.1794 35 1 -0.2582 -8.0210 -5.3323 36 1 -0.2283 -9.6526 -4.6222 37 1 0.9616 -7.1480 -3.3454 38 1 1.8882 -8.4225 -4.1745 39 1 1.8491 -8.6972 -1.6694 40 1 1.1451 -10.0868 -2.5360 41 1 1.8060 -6.4222 0.0011 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065198699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:55 Heat of formation + Delta-G solvation = 10.159306 kcal Electronic energy + Delta-G solvation = -29775.705901 eV Core-core repulsion = 25592.504381 eV Total energy + Delta-G solvation = -4183.201520 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.104 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -42.09136 -38.57964 -37.71301 -37.29881 -36.01766 -35.83939 -33.92759 -32.62548 -32.55427 -31.26371 -31.08967 -28.46054 -26.39025 -24.70028 -23.73206 -23.46926 -22.58801 -21.35662 -20.63187 -19.05775 -18.49581 -18.25836 -17.47582 -16.67175 -16.53985 -16.07352 -15.84552 -15.23929 -14.87089 -14.75059 -14.57592 -14.49771 -14.38001 -14.04698 -13.83154 -13.76790 -13.19508 -12.82849 -12.68432 -12.10844 -12.07025 -12.01623 -11.94391 -11.76654 -11.71689 -11.44352 -11.34665 -11.22891 -11.17836 -10.99216 -10.80662 -10.70172 -10.65419 -10.46755 -10.27151 -9.81634 -9.23170 -9.18407 -8.73407 -7.15858 -6.77147 -4.38406 0.36263 0.93897 1.71869 2.58759 2.92442 2.93494 3.02581 3.09184 3.55454 3.69113 3.79042 3.89338 4.16206 4.29928 4.44031 4.66228 4.68920 4.70313 4.82287 4.91954 5.01174 5.04044 5.15155 5.31479 5.41037 5.51145 5.53022 5.56976 5.59982 5.65271 5.75890 5.87012 5.91367 6.04259 6.11513 6.16794 6.32932 6.42990 6.65238 6.77116 6.93259 7.15396 7.66624 8.05418 8.52055 8.86905 9.28187 10.21497 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.017383 B = 0.003180 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.362251 B = 8802.031575 C = 8992.860815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.040 3.960 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.291 4.291 8 H 0.130 0.870 9 N -0.215 5.215 10 N -0.193 5.193 11 C 0.166 3.834 12 C -0.075 4.075 13 C -0.066 4.066 14 C -0.740 4.740 15 S 2.709 3.291 16 O -0.960 6.960 17 O -0.953 6.953 18 N -0.998 5.998 19 C 0.122 3.878 20 C -0.138 4.138 21 C -0.116 4.116 22 C -0.139 4.139 23 C 0.120 3.880 24 C 0.261 3.739 25 N -0.459 5.459 26 C 0.541 3.459 27 O -0.585 6.585 28 H 0.278 0.722 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -14.846 -7.506 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.175 4.175 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.421 4.421 8 H 0.147 0.853 9 N -0.016 5.016 10 N -0.022 5.022 11 C -0.090 4.090 12 C -0.098 4.098 13 C -0.092 4.092 14 C -0.833 4.833 15 S 2.799 3.201 16 O -0.950 6.950 17 O -0.944 6.944 18 N -0.836 5.836 19 C -0.003 4.003 20 C -0.177 4.177 21 C -0.153 4.153 22 C -0.178 4.178 23 C -0.005 4.005 24 C 0.132 3.868 25 N -0.171 5.171 26 C 0.247 3.753 27 O -0.466 6.466 28 H 0.089 0.911 29 H 0.166 0.834 30 H 0.161 0.839 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -5.006 -14.153 -6.766 16.466 hybrid contribution 0.545 0.922 -0.340 1.124 sum -4.461 -13.230 -7.106 15.666 Atomic orbital electron populations 1.70247 1.05909 1.28563 1.37001 1.25632 0.96027 1.00341 0.95472 0.85632 0.79398 0.78915 0.79186 1.19385 1.19906 1.18530 1.19873 0.92202 0.78620 1.51397 0.85286 1.44812 1.02133 1.04635 1.50051 1.78928 0.93341 1.08352 1.21579 1.21674 0.87337 0.89304 1.10732 1.19980 0.94295 0.92864 1.02645 1.20069 0.95123 0.93650 1.00312 1.30287 0.98619 1.26420 1.27995 1.01486 0.73393 0.73093 0.72078 1.93577 1.43586 1.81977 1.75907 1.93553 1.44465 1.80501 1.75835 1.57806 1.12275 1.82133 1.31369 1.21537 0.84743 1.00143 0.93877 1.22019 0.98300 1.01141 0.96244 1.21443 0.94389 1.01306 0.98188 1.21948 0.98613 1.00954 0.96308 1.21466 0.84438 1.00645 0.93975 1.21287 0.98854 0.81635 0.85073 1.43540 1.10226 1.05985 1.57330 1.16376 0.84563 0.81795 0.92590 1.90896 1.10966 1.80661 1.64121 0.91130 0.83446 0.83918 0.90919 0.88922 0.90958 0.90831 0.91845 0.91876 0.91199 0.90700 0.89076 0.90739 0.81175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.50 11.82 55.47 0.66 -19.85 16 2 C 0.04 0.99 5.49 -17.54 -0.10 0.89 16 3 Si 0.95 18.72 29.55 -169.99 -5.02 13.70 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.29 -7.84 10.08 -15.16 -0.15 -7.99 16 8 H 0.13 3.37 7.80 -52.49 -0.41 2.96 16 9 N -0.21 -5.89 3.68 -15.44 -0.06 -5.95 16 10 N -0.19 -5.00 10.48 31.28 0.33 -4.67 16 11 C 0.17 3.70 7.86 -155.60 -1.22 2.48 16 12 C -0.07 -1.29 10.11 -39.27 -0.40 -1.69 16 13 C -0.07 -0.98 9.53 -39.48 -0.38 -1.35 16 14 C -0.74 -11.32 5.94 -39.90 -0.24 -11.56 16 15 S 2.71 36.04 5.68 -107.50 -0.61 35.43 16 16 O -0.96 -14.93 15.91 -57.17 -0.91 -15.84 16 17 O -0.95 -14.02 16.01 -57.17 -0.92 -14.94 16 18 N -1.00 -10.24 3.28 -113.27 -0.37 -10.61 16 19 C 0.12 1.02 6.41 -3.49 -0.02 0.99 16 20 C -0.14 -1.07 6.10 -26.39 -0.16 -1.23 16 21 C -0.12 -0.87 5.88 -26.69 -0.16 -1.03 16 22 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 23 C 0.12 1.10 6.37 -3.71 -0.02 1.07 16 24 C 0.26 4.71 10.36 -16.38 -0.17 4.54 16 25 N -0.46 -10.28 2.91 -66.61 -0.19 -10.47 16 26 C 0.54 14.24 8.61 -86.85 -0.75 13.49 16 27 O -0.59 -16.35 17.81 5.17 0.09 -16.26 16 28 H 0.28 6.61 8.31 -40.82 -0.34 6.27 16 29 H 0.15 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.14 1.67 7.65 -52.49 -0.40 1.27 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.75 7.12 -51.93 -0.37 0.38 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.88 7.13 -51.93 -0.37 0.51 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.17 2.78 7.50 -52.49 -0.39 2.39 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -34.30 355.99 -10.45 -44.75 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -4.88 Total: 2.08 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.93 Total: -2.74 kcal Atomic # 7 Polarization: -51.91 SS G_CDS: 0.36 Total: -51.55 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.73 Total: -47.03 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 36.04 SS G_CDS: -0.61 Total: 35.43 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.30 -10.45 -44.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065198699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.913 kcal (2) G-P(sol) polarization free energy of solvation -34.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds