Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42102 * 110.54436 * 2 1 4 4 O 1.42101 * 110.54280 * 223.25587 * 2 1 3 5 5 N 1.65598 * 104.45267 * 111.62865 * 2 1 3 6 6 C 1.46922 * 120.63151 * 269.97921 * 5 2 1 7 7 C 1.53197 * 108.77876 * 126.41021 * 6 5 2 8 8 C 1.53042 * 109.31001 * 54.63167 * 7 6 5 9 9 C 1.53029 * 109.53895 * 298.63667 * 8 7 6 10 10 H 1.08999 * 109.52932 * 301.39495 * 9 8 7 11 11 C 1.50708 * 109.49700 * 181.31863 * 9 8 7 12 12 O 1.21285 * 119.99624 * 240.16438 * 11 9 8 13 13 N 1.34772 * 120.00212 * 60.15988 * 11 9 8 14 14 C 1.39229 * 120.00165 * 175.50444 * 13 11 9 15 15 C 1.39483 * 119.83254 * 215.98636 * 14 13 11 16 16 C 1.36376 * 120.16778 * 179.97438 * 15 14 13 17 17 C 1.40862 * 119.83152 * 0.02562 * 16 15 14 18 18 C 1.41150 * 120.16879 * 179.97438 * 17 16 15 19 19 H 1.07995 * 120.00336 * 204.43994 * 18 17 16 20 20 C 1.39906 * 119.99512 * 24.71997 * 18 17 16 21 21 N 1.30866 * 120.00240 * 15.52242 * 20 18 17 22 22 Si 1.86807 * 119.99827 * 195.52219 * 20 18 17 23 23 H 1.48498 * 109.46916 * 59.99811 * 22 20 18 24 24 H 1.48496 * 109.46954 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47194 * 300.00055 * 22 20 18 26 26 C 1.40875 * 119.67105 * 0.27188 * 17 16 15 27 27 C 1.36377 * 119.82503 * 359.42288 * 26 17 16 28 28 C 1.46922 * 120.63242 * 89.99533 * 5 2 1 29 29 H 1.09004 * 109.46689 * 308.37187 * 1 2 3 30 30 H 1.09003 * 109.47020 * 68.36926 * 1 2 3 31 31 H 1.08994 * 109.47024 * 188.37484 * 1 2 3 32 32 H 1.09001 * 109.58749 * 246.20098 * 6 5 2 33 33 H 1.09003 * 109.58856 * 6.61969 * 6 5 2 34 34 H 1.08999 * 109.50011 * 174.58677 * 7 6 5 35 35 H 1.09003 * 109.49620 * 294.65162 * 7 6 5 36 36 H 1.09005 * 109.45580 * 178.61458 * 8 7 6 37 37 H 1.09004 * 109.45598 * 58.65933 * 8 7 6 38 38 H 0.97006 * 119.99671 * 355.50571 * 13 11 9 39 39 H 1.08004 * 119.91887 * 0.02663 * 15 14 13 40 40 H 1.07998 * 120.08370 * 180.02562 * 16 15 14 41 41 H 0.97005 * 120.00098 * 180.02562 * 21 20 18 42 42 H 1.08001 * 120.08585 * 179.72684 * 26 17 16 43 43 H 1.07997 * 119.91447 * 180.29669 * 27 26 17 44 44 H 1.08996 * 109.59013 * 113.79953 * 28 5 2 45 45 H 1.09002 * 109.58707 * 353.37853 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9691 -0.9118 5 7 2.2273 -0.5911 1.4907 6 6 2.4146 0.3170 2.6304 7 6 1.5318 -0.1574 3.7891 8 6 1.8442 -1.6238 4.0958 9 6 1.5313 -2.4815 2.8677 10 1 0.4820 -2.3623 2.5978 11 6 1.8085 -3.9293 3.1813 12 8 2.6307 -4.5431 2.5346 13 7 1.1431 -4.5418 4.1805 14 6 1.3300 -5.9022 4.4101 15 6 0.2557 -6.6902 4.8232 16 6 0.4310 -8.0236 5.0495 17 6 1.7010 -8.6046 4.8655 18 6 1.8905 -9.9838 5.0982 19 1 2.8720 -10.3597 5.3465 20 6 0.8079 -10.8647 5.0014 21 7 -0.2955 -10.4830 4.4103 22 14 0.9374 -12.5858 5.7160 23 1 1.1988 -12.4975 7.1751 24 1 -0.3355 -13.3148 5.4849 25 1 2.0517 -13.3130 5.0567 26 6 2.7825 -7.8010 4.4541 27 6 2.5904 -6.4703 4.2257 28 6 2.4140 -2.0335 1.6986 29 1 -0.3633 0.6380 0.8057 30 1 -0.3633 0.3788 -0.9553 31 1 -0.3633 -1.0166 0.1497 32 1 3.4600 0.3054 2.9389 33 1 2.1276 1.3285 2.3428 34 1 1.7328 0.4498 4.6718 35 1 0.4825 -0.0589 3.5110 36 1 1.2349 -1.9568 4.9362 37 1 2.8994 -1.7248 4.3501 38 1 0.5338 -4.0347 4.7397 39 1 -0.7175 -6.2434 4.9635 40 1 -0.4018 -8.6325 5.3690 41 1 -1.0463 -11.0937 4.3435 42 1 3.7600 -8.2387 4.3153 43 1 3.4174 -5.8539 3.9057 44 1 3.4593 -2.2369 1.9311 45 1 2.1267 -2.5730 0.7961 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065363771.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = -85.936008 kcal Electronic energy + Delta-G solvation = -28806.445200 eV Core-core repulsion = 24722.617018 eV Total energy + Delta-G solvation = -4083.828182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.22568 -38.36103 -37.45218 -37.07339 -36.21925 -34.52785 -33.30342 -32.56783 -31.52498 -29.82705 -29.58973 -28.87541 -25.49766 -24.90035 -23.87969 -21.78144 -21.23278 -20.59232 -19.44092 -19.11472 -18.11000 -17.39004 -16.89183 -16.61000 -16.56463 -16.08109 -15.32467 -15.13042 -14.91358 -14.58267 -14.27040 -13.97700 -13.87560 -13.70526 -13.60869 -13.48134 -13.11680 -12.86327 -12.67322 -12.36615 -12.28568 -12.20267 -12.13043 -11.82376 -11.75156 -11.51599 -11.34846 -11.31774 -11.16410 -11.11060 -11.03380 -10.79311 -10.74860 -10.05729 -9.62059 -9.43921 -9.30030 -9.06304 -8.90401 -7.56453 -7.02578 -6.76872 -4.33764 -0.06980 2.25836 2.52712 2.97874 3.04082 3.07483 3.08629 3.31272 3.55031 3.63063 3.83710 3.90285 4.20827 4.42959 4.50089 4.52604 4.57441 4.61863 4.74571 4.85088 4.99304 5.13997 5.22969 5.30221 5.44578 5.52226 5.54218 5.68038 5.71045 5.76649 5.92615 5.99332 6.16538 6.22402 6.43721 6.75174 6.91144 7.01558 7.17080 7.26574 7.57662 7.70565 7.85993 8.00897 8.25252 8.26091 8.56592 8.71646 8.85713 8.97159 10.14497 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.025729 B = 0.002039 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.014853 B =13729.441292 C =14018.955390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.609 3.391 3 O -0.957 6.957 4 O -0.949 6.949 5 N -0.999 5.999 6 C 0.118 3.882 7 C -0.134 4.134 8 C -0.110 4.110 9 C -0.123 4.123 10 H 0.097 0.903 11 C 0.503 3.497 12 O -0.528 6.528 13 N -0.647 5.647 14 C -0.014 4.014 15 C -0.112 4.112 16 C -0.156 4.156 17 C 0.106 3.894 18 C -0.455 4.455 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.793 5.793 22 Si 0.911 3.089 23 H -0.264 1.264 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.219 4.219 27 C -0.074 4.074 28 C 0.141 3.859 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.394 0.606 39 H 0.089 0.911 40 H 0.124 0.876 41 H 0.281 0.719 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.094 21.103 -1.281 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.702 3.298 3 O -0.948 6.948 4 O -0.940 6.940 5 N -0.836 5.836 6 C -0.007 4.007 7 C -0.173 4.173 8 C -0.148 4.148 9 C -0.146 4.146 10 H 0.115 0.885 11 C 0.288 3.712 12 O -0.405 6.405 13 N -0.289 5.289 14 C -0.106 4.106 15 C -0.132 4.132 16 C -0.176 4.176 17 C 0.103 3.897 18 C -0.485 4.485 19 H 0.096 0.904 20 C -0.144 4.144 21 N -0.419 5.419 22 Si 0.735 3.265 23 H -0.188 1.188 24 H -0.203 1.203 25 H -0.190 1.190 26 C -0.239 4.239 27 C -0.093 4.093 28 C 0.016 3.984 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.094 0.906 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.107 0.893 40 H 0.142 0.858 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.149 20.856 -2.536 21.119 hybrid contribution -1.251 -0.757 0.834 1.683 sum -3.400 20.099 -1.702 20.455 Atomic orbital electron populations 1.30611 1.28895 1.11735 1.11263 1.04980 0.77707 0.73996 0.73127 1.93599 1.77619 1.37837 1.85723 1.93643 1.77333 1.61408 1.61576 1.57780 1.84205 1.14544 1.27101 1.21474 1.00937 0.92443 0.85825 1.21953 1.00222 0.96455 0.98658 1.21491 1.03043 0.94152 0.96130 1.21705 1.02126 0.92887 0.97872 0.88466 1.20306 0.82391 0.88182 0.80299 1.90719 1.33262 1.66326 1.50185 1.42951 1.44992 1.09193 1.31804 1.17162 0.94653 0.81846 1.16907 1.20235 0.94968 0.94511 1.03512 1.20958 0.98960 0.92445 1.05196 1.17678 0.91257 0.93044 0.87713 1.19559 0.95695 0.91945 1.41275 0.90391 1.25941 0.94614 1.01099 0.92794 1.69823 1.04155 1.37393 1.30511 0.86322 0.78478 0.81127 0.80534 1.18818 1.20343 1.18960 1.20674 0.98957 0.93803 1.10447 1.20348 0.94636 0.95289 0.99077 1.21216 1.01028 0.77733 0.98429 0.85461 0.85513 0.85230 0.90578 0.89085 0.90149 0.91342 0.90949 0.90761 0.77279 0.89302 0.85846 0.90796 0.88732 0.87624 0.89506 0.88257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.48 10.99 101.05 1.11 -2.37 16 2 S 2.61 23.35 6.05 -107.50 -0.65 22.70 16 3 O -0.96 -10.88 16.72 -57.54 -0.96 -11.85 16 4 O -0.95 -12.49 16.73 -57.54 -0.96 -13.45 16 5 N -1.00 -8.59 3.22 -113.52 -0.37 -8.95 16 6 C 0.12 0.79 6.31 -3.71 -0.02 0.77 16 7 C -0.13 -0.73 6.08 -26.61 -0.16 -0.89 16 8 C -0.11 -0.86 5.07 -26.69 -0.14 -1.00 16 9 C -0.12 -1.26 2.68 -91.65 -0.25 -1.50 16 10 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 11 C 0.50 7.92 6.98 -10.98 -0.08 7.84 16 12 O -0.53 -10.71 13.38 5.55 0.07 -10.64 16 13 N -0.65 -10.47 5.22 -9.74 -0.05 -10.52 16 14 C -0.01 -0.29 6.29 -83.57 -0.53 -0.81 16 15 C -0.11 -2.49 9.90 -39.79 -0.39 -2.88 16 16 C -0.16 -3.92 8.64 -39.26 -0.34 -4.26 16 17 C 0.11 2.80 5.58 -106.80 -0.60 2.20 16 18 C -0.46 -11.95 9.05 -37.85 -0.34 -12.29 16 19 H 0.08 1.97 7.89 -52.49 -0.41 1.55 16 20 C 0.07 1.81 5.19 -17.34 -0.09 1.72 16 21 N -0.79 -20.17 10.82 55.55 0.60 -19.56 16 22 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.22 -5.49 9.74 -39.25 -0.38 -5.87 16 27 C -0.07 -1.73 8.61 -39.79 -0.34 -2.07 16 28 C 0.14 1.55 4.95 -3.71 -0.02 1.53 16 29 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.13 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.51 7.10 -51.93 -0.37 0.14 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.51 7.44 -51.93 -0.39 0.12 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.39 4.86 8.10 -40.82 -0.33 4.53 16 39 H 0.09 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.12 3.19 6.07 -52.49 -0.32 2.87 16 41 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 42 H 0.09 2.27 8.06 -52.49 -0.42 1.84 16 43 H 0.11 2.44 6.27 -52.49 -0.33 2.12 16 44 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 45 H 0.10 1.19 7.10 -51.93 -0.37 0.82 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -34.61 376.61 -10.53 -45.14 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -6.29 Total: 8.01 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -2.56 Total: -19.90 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.18 Total: -39.04 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.85 Total: -35.93 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Atomic # 16 Polarization: 23.35 SS G_CDS: -0.65 Total: 22.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.61 -10.53 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065363771.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.800 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds