Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42104 * 110.54280 * 2 1 4 4 O 1.42097 * 110.54140 * 223.25407 * 2 1 3 5 5 N 1.65601 * 104.45094 * 111.62792 * 2 1 3 6 6 C 1.46930 * 120.62868 * 269.97578 * 5 2 1 7 7 C 1.53189 * 108.77548 * 233.62930 * 6 5 2 8 8 C 1.53103 * 109.33258 * 305.36758 * 7 6 5 9 9 C 1.53045 * 109.50265 * 61.33944 * 8 7 6 10 10 H 1.09001 * 109.49504 * 58.62642 * 9 8 7 11 11 C 1.50705 * 109.49545 * 178.68578 * 9 8 7 12 12 O 1.21282 * 120.00040 * 119.93826 * 11 9 8 13 13 N 1.34774 * 120.00258 * 299.93514 * 11 9 8 14 14 C 1.39234 * 119.99921 * 175.70655 * 13 11 9 15 15 C 1.39481 * 119.83286 * 215.02136 * 14 13 11 16 16 C 1.36379 * 120.17045 * 179.72364 * 15 14 13 17 17 C 1.40868 * 119.82439 * 0.53064 * 16 15 14 18 18 C 1.41156 * 120.16465 * 179.77115 * 17 16 15 19 19 H 1.08000 * 119.99795 * 214.75761 * 18 17 16 20 20 C 1.39904 * 119.99763 * 34.75336 * 18 17 16 21 21 N 1.30873 * 120.00338 * 355.57242 * 20 18 17 22 22 Si 1.86799 * 119.99722 * 175.58041 * 20 18 17 23 23 H 1.48499 * 109.47627 * 59.99640 * 22 20 18 24 24 H 1.48500 * 109.47070 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.46975 * 299.99528 * 22 20 18 26 26 C 1.40867 * 119.67157 * 359.74053 * 17 16 15 27 27 C 1.36369 * 119.83129 * 0.02562 * 26 17 16 28 28 C 1.46922 * 120.63202 * 89.99639 * 5 2 1 29 29 H 1.09000 * 109.46930 * 308.37422 * 1 2 3 30 30 H 1.09004 * 109.47290 * 68.36805 * 1 2 3 31 31 H 1.08997 * 109.47121 * 188.37215 * 1 2 3 32 32 H 1.09001 * 109.58583 * 353.41925 * 6 5 2 33 33 H 1.08998 * 109.58358 * 113.84143 * 6 5 2 34 34 H 1.09004 * 109.49553 * 65.31727 * 7 6 5 35 35 H 1.08994 * 109.49820 * 185.38614 * 7 6 5 36 36 H 1.09006 * 109.44835 * 301.34886 * 8 7 6 37 37 H 1.08998 * 109.51018 * 181.36583 * 8 7 6 38 38 H 0.97003 * 119.99795 * 355.71439 * 13 11 9 39 39 H 1.08005 * 119.91825 * 0.02562 * 15 14 13 40 40 H 1.07995 * 120.08705 * 180.25522 * 16 15 14 41 41 H 0.97000 * 120.00286 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.08376 * 179.97438 * 26 17 16 43 43 H 1.08006 * 119.91552 * 179.97438 * 27 26 17 44 44 H 1.08999 * 109.58421 * 6.58458 * 28 5 2 45 45 H 1.08995 * 109.58830 * 246.16035 * 28 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 2.4146 0.3171 2.6304 7 6 3.7928 0.0573 3.2466 8 6 3.9190 -1.4274 3.5985 9 6 3.7923 -2.2669 2.3252 10 1 4.5680 -1.9739 1.6176 11 6 3.9487 -3.7262 2.6672 12 8 3.0482 -4.5040 2.4325 13 7 5.0893 -4.1671 3.2340 14 6 5.2002 -5.4967 3.6318 15 6 5.9312 -5.8203 4.7748 16 6 6.0397 -7.1199 5.1740 17 6 5.4205 -8.1377 4.4222 18 6 5.5322 -9.4856 4.8260 19 1 5.5907 -10.2684 4.0843 20 6 5.5672 -9.8074 6.1871 21 7 5.5839 -8.8550 7.0846 22 14 5.5904 -11.5966 6.7234 23 1 6.7934 -12.2652 6.1657 24 1 5.6276 -11.6684 8.2062 25 1 4.3691 -12.2787 6.2248 26 6 4.6888 -7.8035 3.2658 27 6 4.5852 -6.4991 2.8819 28 6 2.4140 -2.0335 1.6987 29 1 -0.3633 0.6380 0.8057 30 1 -0.3634 0.3788 -0.9553 31 1 -0.3633 -1.0167 0.1496 32 1 2.3563 1.3502 2.2878 33 1 1.6406 0.1328 3.3755 34 1 4.5685 0.3284 2.5303 35 1 3.9063 0.6565 4.1499 36 1 3.1280 -1.7036 4.2958 37 1 4.8895 -1.6110 4.0594 38 1 5.8328 -3.5580 3.3648 39 1 6.4085 -5.0392 5.3481 40 1 6.6025 -7.3685 6.0615 41 1 5.6078 -9.0782 8.0282 42 1 4.2117 -8.5786 2.6842 43 1 4.0248 -6.2414 1.9953 44 1 2.3554 -2.5512 0.7413 45 1 1.6400 -2.4094 2.3677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065363772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = -84.681341 kcal Electronic energy + Delta-G solvation = -28779.748084 eV Core-core repulsion = 24695.974308 eV Total energy + Delta-G solvation = -4083.773776 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19710 -38.33374 -37.47256 -37.05532 -36.22788 -34.48056 -33.24797 -32.53381 -31.45768 -29.82614 -29.58243 -28.81371 -25.46646 -24.85781 -23.86085 -21.78116 -21.15291 -20.58013 -19.47077 -19.06186 -18.13864 -17.34703 -16.88398 -16.56306 -16.50429 -16.07116 -15.19448 -15.17708 -14.90293 -14.53134 -14.31681 -14.03290 -13.92077 -13.55535 -13.51085 -13.42639 -13.12005 -12.86362 -12.65274 -12.38363 -12.31516 -12.21947 -12.10209 -11.72812 -11.69990 -11.40262 -11.35596 -11.23984 -11.16050 -11.13548 -10.98896 -10.73483 -10.71304 -10.01291 -9.49669 -9.42948 -9.36444 -9.07066 -8.84994 -7.55011 -6.86788 -6.62213 -4.34683 -0.09266 2.25624 2.54056 3.02127 3.08069 3.09613 3.11744 3.31575 3.54171 3.65181 3.83345 3.97748 4.21613 4.43374 4.53426 4.61533 4.64692 4.70290 4.79912 4.92757 5.05490 5.19347 5.28456 5.29359 5.47354 5.57601 5.58172 5.65747 5.74762 5.81292 5.94528 6.07256 6.18474 6.24486 6.45095 6.75192 6.91419 7.06666 7.20663 7.29385 7.63597 7.74023 7.86187 8.05868 8.25627 8.31338 8.61618 8.73216 8.92451 8.99744 10.28790 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.002041 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.552669 B =13714.175177 C =14195.988618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.609 3.391 3 O -0.957 6.957 4 O -0.951 6.951 5 N -1.001 6.001 6 C 0.115 3.885 7 C -0.129 4.129 8 C -0.110 4.110 9 C -0.117 4.117 10 H 0.100 0.900 11 C 0.507 3.493 12 O -0.531 6.531 13 N -0.649 5.649 14 C 0.003 3.997 15 C -0.120 4.120 16 C -0.142 4.142 17 C 0.100 3.900 18 C -0.461 4.461 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.812 5.812 22 Si 0.916 3.084 23 H -0.266 1.266 24 H -0.280 1.280 25 H -0.266 1.266 26 C -0.206 4.206 27 C -0.085 4.085 28 C 0.138 3.862 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.395 0.605 39 H 0.090 0.910 40 H 0.132 0.868 41 H 0.278 0.722 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 19.824 -6.273 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.823 4.823 2 S 2.703 3.297 3 O -0.948 6.948 4 O -0.941 6.941 5 N -0.839 5.839 6 C -0.010 4.010 7 C -0.168 4.168 8 C -0.148 4.148 9 C -0.140 4.140 10 H 0.118 0.882 11 C 0.292 3.708 12 O -0.408 6.408 13 N -0.291 5.291 14 C -0.089 4.089 15 C -0.141 4.141 16 C -0.162 4.162 17 C 0.097 3.903 18 C -0.492 4.492 19 H 0.093 0.907 20 C -0.146 4.146 21 N -0.440 5.440 22 Si 0.741 3.259 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.226 4.226 27 C -0.105 4.105 28 C 0.013 3.987 29 H 0.146 0.854 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.229 0.771 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.120 0.880 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.777 19.588 -6.861 21.833 hybrid contribution -0.369 -0.598 0.835 1.092 sum -7.146 18.990 -6.025 21.166 Atomic orbital electron populations 1.30583 1.28700 1.11817 1.11226 1.04899 0.77735 0.73997 0.73105 1.93595 1.77603 1.37872 1.85683 1.93630 1.77387 1.61432 1.61653 1.57737 1.84240 1.14668 1.27211 1.21509 0.97928 0.93376 0.88185 1.21858 0.97240 0.96363 1.01306 1.21510 1.03232 0.94160 0.95881 1.21586 1.00003 0.92981 0.99467 0.88191 1.20319 0.82389 0.89422 0.78641 1.90689 1.40621 1.56887 1.52630 1.42986 1.15217 1.10699 1.60195 1.17269 1.11066 0.81643 0.98927 1.20309 1.01995 0.97017 0.94738 1.21189 1.02093 0.90912 1.01987 1.17723 0.88286 0.93764 0.90497 1.19468 1.44715 0.93077 0.91919 0.90655 1.25877 0.92542 0.99484 0.96649 1.69752 1.38140 1.33714 1.02369 0.86247 0.79770 0.82228 0.77672 1.19061 1.20457 1.19104 1.20813 1.05166 0.94562 1.02033 1.20404 0.99453 0.92196 0.98444 1.21234 0.96166 0.78247 1.03086 0.85445 0.85553 0.85146 0.88766 0.91187 0.91025 0.90236 0.90895 0.90865 0.77101 0.89141 0.85058 0.91113 0.88610 0.87420 0.88006 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.36 10.99 101.05 1.11 -2.25 16 2 S 2.61 22.53 6.09 -107.50 -0.66 21.87 16 3 O -0.96 -10.56 16.59 -57.54 -0.95 -11.52 16 4 O -0.95 -11.95 16.59 -57.54 -0.95 -12.90 16 5 N -1.00 -8.52 3.22 -113.53 -0.37 -8.88 16 6 C 0.12 0.79 6.43 -3.71 -0.02 0.77 16 7 C -0.13 -0.93 6.08 -26.58 -0.16 -1.09 16 8 C -0.11 -1.01 5.09 -26.65 -0.14 -1.14 16 9 C -0.12 -1.35 2.67 -91.65 -0.24 -1.60 16 10 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 11 C 0.51 8.27 6.99 -10.98 -0.08 8.19 16 12 O -0.53 -10.75 13.34 5.56 0.07 -10.67 16 13 N -0.65 -10.89 5.16 -9.74 -0.05 -10.94 16 14 C 0.00 0.07 6.30 -83.57 -0.53 -0.46 16 15 C -0.12 -2.69 9.90 -39.79 -0.39 -3.09 16 16 C -0.14 -3.61 8.61 -39.26 -0.34 -3.95 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 18 C -0.46 -12.26 9.03 -37.85 -0.34 -12.60 16 19 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 20 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 21 N -0.81 -21.00 10.59 55.55 0.59 -20.42 16 22 Si 0.92 18.95 29.56 -169.99 -5.03 13.93 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 C -0.21 -5.19 9.74 -39.26 -0.38 -5.57 16 27 C -0.09 -2.02 8.61 -39.79 -0.34 -2.36 16 28 C 0.14 1.50 5.06 -3.71 -0.02 1.48 16 29 H 0.13 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.13 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.13 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.58 6.86 -51.93 -0.36 0.22 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.63 7.63 -51.93 -0.40 0.23 16 38 H 0.40 5.20 8.36 -40.82 -0.34 4.86 16 39 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 40 H 0.13 3.45 6.13 -52.49 -0.32 3.13 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.11 2.52 6.22 -52.48 -0.33 2.19 16 44 H 0.10 1.21 6.86 -51.93 -0.36 0.86 16 45 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 LS Contribution 376.36 15.07 5.67 5.67 Total: -1.00 -34.42 376.36 -10.52 -44.94 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.29 Total: 8.86 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -2.56 Total: -19.93 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.17 Total: -40.23 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -1.83 Total: -35.10 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.93 kcal Atomic # 16 Polarization: 22.53 SS G_CDS: -0.66 Total: 21.87 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.42 -10.52 -44.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065363772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.745 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds