Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35909 * 116.99551 * 2 1 4 4 C 1.38753 * 120.05744 * 0.25108 * 3 2 1 5 5 C 1.38119 * 119.94257 * 180.32106 * 4 3 2 6 6 C 1.38288 * 120.05469 * 359.67762 * 5 4 3 7 7 C 1.38238 * 120.11498 * 0.02697 * 6 5 4 8 8 C 1.38171 * 120.05552 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.02833 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47491 * 265.00023 * 9 8 7 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 8 12 12 C 1.38109 * 119.99599 * 179.72256 * 11 10 9 13 13 N 1.32860 * 120.81584 * 0.02562 * 12 11 10 14 14 C 1.32129 * 121.19076 * 179.69432 * 13 12 11 15 15 N 1.31501 * 122.64905 * 0.63590 * 14 13 12 16 16 C 1.33201 * 120.68151 * 359.66501 * 15 14 13 17 17 C 1.40815 * 120.81034 * 180.27649 * 12 11 10 18 18 C 1.41173 * 134.70172 * 0.02562 * 17 12 11 19 19 N 1.30251 * 108.46812 * 179.97438 * 18 17 12 20 20 N 1.36309 * 134.61304 * 180.02562 * 16 15 14 21 21 C 1.46499 * 125.87332 * 0.02562 * 20 16 15 22 22 C 1.50702 * 109.47335 * 90.00123 * 21 20 16 23 23 H 1.07997 * 119.99759 * 359.97438 * 22 21 20 24 24 C 1.37883 * 119.99981 * 180.02562 * 22 21 20 25 25 N 1.31507 * 119.99995 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99820 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46970 * 89.99474 * 26 24 22 28 28 H 1.48498 * 109.47306 * 209.99728 * 26 24 22 29 29 H 1.48504 * 109.47192 * 329.99999 * 26 24 22 30 30 H 1.09000 * 109.47508 * 299.99913 * 1 2 3 31 31 H 1.08998 * 109.47387 * 60.00180 * 1 2 3 32 32 H 1.09003 * 109.46536 * 179.97438 * 1 2 3 33 33 H 1.08001 * 120.02555 * 0.02567 * 4 3 2 34 34 H 1.08000 * 119.96934 * 179.70493 * 5 4 3 35 35 H 1.08004 * 119.94219 * 180.02562 * 6 5 4 36 36 H 1.07996 * 119.97328 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.46801 * 145.00062 * 9 8 7 38 38 H 1.09000 * 109.46987 * 25.00831 * 9 8 7 39 39 H 1.09004 * 109.47066 * 60.00201 * 10 9 8 40 40 H 1.08994 * 109.46974 * 300.00349 * 10 9 8 41 41 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 42 42 H 1.08003 * 118.67198 * 180.27908 * 14 13 12 43 43 H 1.07995 * 125.76588 * 359.95965 * 18 17 12 44 44 H 1.09005 * 109.47124 * 210.00013 * 21 20 16 45 45 H 1.08998 * 109.47256 * 329.99412 * 21 20 16 46 46 H 0.97003 * 119.99965 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 0.0053 5 6 1.9207 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0067 7 6 4.0558 2.5173 -0.0058 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0224 0.0003 10 6 4.4216 -0.4775 -1.4360 11 7 5.2219 -1.7046 -1.4355 12 6 5.5025 -2.3464 -2.6258 13 7 5.0553 -1.8649 -3.7805 14 6 5.3243 -2.4696 -4.9241 15 7 6.0306 -3.5767 -4.9923 16 6 6.5186 -4.1407 -3.8886 17 6 6.2652 -3.5300 -2.6447 18 6 6.8894 -4.3249 -1.6591 19 7 7.4722 -5.3300 -2.2479 20 7 7.2648 -5.2519 -3.6309 21 6 7.7654 -6.2002 -4.6291 22 6 9.1255 -5.7582 -5.1042 23 1 9.5722 -4.8604 -4.7030 24 6 9.7993 -6.4994 -6.0517 25 7 9.2552 -7.5923 -6.5405 26 14 11.4849 -5.9511 -6.6411 27 1 12.5319 -6.5590 -5.7811 28 1 11.6840 -6.3873 -8.0465 29 1 11.5790 -4.4710 -6.5640 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2127 2.3203 0.0098 34 1 1.3337 4.5114 -0.0022 35 1 3.7920 4.6382 -0.0115 36 1 5.1342 2.5755 -0.0103 37 1 3.7489 -0.7400 0.5936 38 1 5.2340 0.2276 0.4306 39 1 4.9265 0.2848 -2.0293 40 1 3.4414 -0.6827 -1.8661 41 1 5.5511 -2.0687 -0.5988 42 1 4.9440 -2.0403 -5.8393 43 1 6.8848 -4.1321 -0.5965 44 1 7.8411 -7.1917 -4.1824 45 1 7.0784 -6.2342 -5.4746 46 1 9.7293 -8.1140 -7.2068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = 101.691820 kcal Electronic energy + Delta-G solvation = -29400.178441 eV Core-core repulsion = 25291.742395 eV Total energy + Delta-G solvation = -4108.436046 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31337 -40.62542 -38.44544 -37.81218 -36.59082 -34.03351 -33.44254 -31.91860 -31.22480 -30.51457 -29.93237 -28.22154 -27.50517 -27.08021 -24.15525 -23.85602 -23.07551 -22.49234 -22.05461 -21.38719 -20.02222 -18.38073 -17.78560 -17.32598 -16.70023 -16.63241 -16.31688 -16.13079 -15.84590 -15.26976 -15.21045 -14.81219 -14.63883 -14.49230 -14.09167 -13.94303 -13.70853 -13.37562 -13.23136 -13.05560 -13.04435 -12.35706 -12.21502 -12.06007 -12.05225 -11.62547 -11.61034 -11.48378 -11.15879 -11.07311 -10.93286 -10.79635 -10.71337 -10.25544 -10.02530 -9.78728 -9.23091 -9.18087 -8.61624 -8.56190 -8.49508 -8.15503 -7.56269 -6.18800 -4.24981 0.93266 1.08380 1.37666 2.01489 2.91796 2.99532 3.09738 3.18738 3.26677 3.32074 3.38506 3.41582 4.34258 4.36526 4.42194 4.47071 4.58808 4.69884 4.71802 4.77522 4.80255 4.87255 4.90760 4.98434 5.08283 5.12493 5.13513 5.16693 5.22353 5.26824 5.41129 5.57930 5.65553 5.75021 5.77597 5.92308 5.99576 6.10826 6.19279 6.39071 6.41528 6.74230 6.99130 7.02717 7.07189 7.15418 7.32361 7.56507 7.76478 7.94469 7.98903 8.28805 8.75902 8.89422 9.39758 10.89414 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.020885 B = 0.001880 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.329599 B =14889.548387 C =15227.726078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.134 3.866 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.075 4.075 8 C -0.110 4.110 9 C -0.085 4.085 10 C 0.140 3.860 11 N -0.707 5.707 12 C 0.510 3.490 13 N -0.618 5.618 14 C 0.367 3.633 15 N -0.556 5.556 16 C 0.363 3.637 17 C -0.338 4.338 18 C 0.069 3.931 19 N -0.244 5.244 20 N -0.333 5.333 21 C 0.264 3.736 22 C -0.532 4.532 23 H 0.061 0.939 24 C 0.066 3.934 25 N -0.891 5.891 26 Si 0.907 3.093 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.408 0.592 42 H 0.194 0.806 43 H 0.182 0.818 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 21.231 16.096 31.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.088 3.912 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.175 4.175 7 C -0.093 4.093 8 C -0.111 4.111 9 C -0.123 4.123 10 C 0.017 3.983 11 N -0.340 5.340 12 C 0.257 3.743 13 N -0.349 5.349 14 C 0.073 3.927 15 N -0.281 5.281 16 C 0.115 3.885 17 C -0.356 4.356 18 C -0.126 4.126 19 N -0.060 5.060 20 N -0.119 5.119 21 C 0.147 3.853 22 C -0.571 4.571 23 H 0.079 0.921 24 C -0.138 4.138 25 N -0.529 5.529 26 Si 0.734 3.266 27 H -0.204 1.204 28 H -0.208 1.208 29 H -0.198 1.198 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.148 0.852 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.245 0.755 42 H 0.210 0.790 43 H 0.199 0.801 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.190 20.059 15.129 30.443 hybrid contribution 0.585 0.660 0.486 1.007 sum -16.606 20.719 15.615 30.804 Atomic orbital electron populations 1.23074 0.78335 1.04153 1.01235 1.86112 1.21332 1.26588 1.88368 1.18874 0.91781 0.84370 0.96162 1.21233 1.00047 0.92397 1.09056 1.20945 0.94750 0.96950 0.97464 1.21059 0.93914 0.98473 1.04016 1.20955 1.00086 0.90983 0.97295 1.19002 0.90334 0.95412 1.06394 1.20617 0.99574 0.94887 0.97193 1.21224 0.95906 0.85662 0.95546 1.44303 1.57091 1.27268 1.05326 1.17893 0.84743 0.84794 0.86853 1.67958 1.32040 1.37269 0.97609 1.24400 0.87924 0.85904 0.94508 1.67513 1.17165 1.13567 1.29825 1.18940 0.91479 0.88904 0.89186 1.19615 1.16232 1.03111 0.96637 1.23359 0.97362 0.92780 0.99147 1.76929 1.19238 1.21299 0.88577 1.49433 1.38956 1.19278 1.04247 1.19783 0.95534 0.86457 0.83551 1.21250 1.01413 1.10729 1.23670 0.92065 1.24902 0.98602 0.94655 0.95595 1.69918 1.38493 1.15268 1.29259 0.86339 0.83175 0.79075 0.77970 1.20374 1.20822 1.19767 0.92756 0.92562 0.88108 0.85503 0.85893 0.85835 0.85186 0.89954 0.90389 0.91522 0.91200 0.75541 0.78951 0.80105 0.92844 0.92270 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.77 9.64 -19.45 -0.19 -2.96 16 3 C 0.13 1.18 6.66 -39.22 -0.26 0.92 16 4 C -0.21 -1.56 9.04 -39.43 -0.36 -1.91 16 5 C -0.08 -0.57 10.04 -39.61 -0.40 -0.96 16 6 C -0.16 -1.09 10.04 -39.56 -0.40 -1.48 16 7 C -0.08 -0.57 9.68 -39.61 -0.38 -0.95 16 8 C -0.11 -0.95 5.15 -104.47 -0.54 -1.48 16 9 C -0.09 -0.68 5.18 -27.89 -0.14 -0.82 16 10 C 0.14 1.45 5.71 -4.04 -0.02 1.43 16 11 N -0.71 -8.25 5.68 -60.09 -0.34 -8.59 16 12 C 0.51 8.22 7.55 -154.85 -1.17 7.05 16 13 N -0.62 -10.35 9.69 -13.62 -0.13 -10.48 16 14 C 0.37 6.42 12.24 -92.12 -1.13 5.29 16 15 N -0.56 -12.06 10.47 -13.97 -0.15 -12.21 16 16 C 0.36 8.22 8.04 -156.23 -1.26 6.96 16 17 C -0.34 -6.32 6.14 -106.81 -0.66 -6.97 16 18 C 0.07 1.19 11.87 -17.11 -0.20 0.98 16 19 N -0.24 -5.33 12.45 30.80 0.38 -4.95 16 20 N -0.33 -8.13 3.63 -61.64 -0.22 -8.35 16 21 C 0.26 7.16 6.19 -5.19 -0.03 7.12 16 22 C -0.53 -15.41 9.39 -34.44 -0.32 -15.73 16 23 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 24 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 25 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 26 Si 0.91 21.97 29.54 -169.99 -5.02 16.95 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 29 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.05 0.23 7.65 -51.93 -0.40 -0.17 16 31 H 0.06 0.27 7.67 -51.93 -0.40 -0.13 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 34 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 35 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.08 0.67 7.70 -51.93 -0.40 0.27 16 38 H 0.08 0.51 8.05 -51.93 -0.42 0.10 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.41 3.75 8.34 -40.82 -0.34 3.41 16 42 H 0.19 2.58 8.06 -52.48 -0.42 2.16 16 43 H 0.18 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.05 1.49 8.14 -51.93 -0.42 1.07 16 45 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -34.99 396.73 -11.39 -46.38 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.06 Total: 1.21 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -6.38 Total: 2.35 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: 0.28 Total: -69.90 kcal Atomic # 8 Polarization: -2.77 SS G_CDS: -0.19 Total: -2.96 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.99 -11.39 -46.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.068 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds