Wall clock time and date at job start Tue Mar 31 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46905 * 110.99588 * 2 1 4 4 C 1.53005 * 109.46929 * 199.93729 * 3 2 1 5 5 O 1.42898 * 109.47173 * 64.64566 * 4 3 2 6 6 C 1.35892 * 117.00197 * 179.97438 * 5 4 3 7 7 C 1.38732 * 120.05943 * 179.97438 * 6 5 4 8 8 C 1.38149 * 119.94584 * 179.97438 * 7 6 5 9 9 C 1.38262 * 120.05318 * 359.97438 * 8 7 6 10 10 C 1.38267 * 120.11551 * 0.05163 * 9 8 7 11 11 C 1.38143 * 120.05423 * 359.95042 * 10 9 8 12 12 C 1.38097 * 111.00222 * 123.95347 * 2 1 3 13 13 N 1.32866 * 120.81426 * 235.76448 * 12 2 1 14 14 C 1.32129 * 121.19146 * 179.69801 * 13 12 2 15 15 N 1.31506 * 122.64623 * 0.63291 * 14 13 12 16 16 C 1.33196 * 120.68424 * 359.67692 * 15 14 13 17 17 C 1.40816 * 120.81363 * 56.05066 * 12 2 1 18 18 C 1.41163 * 134.70088 * 0.02562 * 17 12 2 19 19 N 1.30251 * 108.47614 * 179.97438 * 18 17 12 20 20 N 1.36312 * 134.61452 * 179.97438 * 16 15 14 21 21 C 1.46496 * 125.87318 * 359.97438 * 20 16 15 22 22 C 1.50701 * 109.47080 * 90.00173 * 21 20 16 23 23 H 1.07999 * 119.99885 * 359.97438 * 22 21 20 24 24 C 1.37878 * 120.00249 * 180.02562 * 22 21 20 25 25 N 1.31512 * 119.99789 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00115 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46834 * 60.00042 * 26 24 22 28 28 H 1.48494 * 109.47027 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.46979 * 299.99896 * 26 24 22 30 30 H 1.08999 * 109.47462 * 64.69620 * 1 2 3 31 31 H 1.09000 * 109.46962 * 184.69021 * 1 2 3 32 32 H 1.08999 * 109.47287 * 304.68986 * 1 2 3 33 33 H 1.09006 * 109.47118 * 79.94043 * 3 2 1 34 34 H 1.08996 * 109.47525 * 319.94014 * 3 2 1 35 35 H 1.08995 * 109.47182 * 304.64593 * 4 3 2 36 36 H 1.09003 * 109.46827 * 184.64408 * 4 3 2 37 37 H 1.07998 * 120.02386 * 359.70722 * 7 6 5 38 38 H 1.07993 * 119.97154 * 180.02562 * 8 7 6 39 39 H 1.08008 * 119.94085 * 179.97438 * 9 8 7 40 40 H 1.08000 * 119.97320 * 179.97438 * 10 9 8 41 41 H 1.08000 * 120.02960 * 180.02562 * 11 10 9 42 42 H 1.08005 * 118.67849 * 180.29070 * 14 13 12 43 43 H 1.08004 * 125.76593 * 359.96404 * 18 17 12 44 44 H 1.09001 * 109.47494 * 209.99990 * 21 20 16 45 45 H 1.08998 * 109.47570 * 330.00357 * 21 20 16 46 46 H 0.97000 * 119.99883 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 3.4441 1.3617 -0.4919 5 8 3.4815 0.9349 -1.8551 6 6 4.7024 0.8707 -2.4484 7 6 4.8122 0.4637 -3.7701 8 6 6.0545 0.3999 -4.3710 9 6 7.1878 0.7417 -3.6564 10 6 7.0810 1.1472 -2.3388 11 6 5.8411 1.2127 -1.7334 12 6 1.9639 -0.7201 1.0694 13 7 2.8072 -0.1639 1.9325 14 6 3.2807 -0.8441 2.9616 15 7 2.9631 -2.0999 3.1885 16 6 2.1292 -2.7475 2.3766 17 6 1.5919 -2.0635 1.2685 18 6 0.7532 -2.9728 0.5885 19 7 0.7756 -4.1096 1.2239 20 7 1.6182 -4.0106 2.3384 21 6 1.9017 -5.0807 3.2979 22 6 0.8989 -5.0266 4.4216 23 1 0.1278 -4.2705 4.4212 24 6 0.9664 -5.9418 5.4506 25 7 1.9057 -6.8622 5.4513 26 14 -0.2762 -5.8742 6.8437 27 1 -1.6448 -6.0515 6.2953 28 1 0.0111 -6.9590 7.8163 29 1 -0.1830 -4.5589 7.5267 30 1 -0.3634 0.4392 -0.9290 31 1 -0.3633 -1.0242 0.0840 32 1 -0.3634 0.5849 0.8450 33 1 1.9579 1.7751 1.0119 34 1 1.3913 1.9926 -0.6613 35 1 4.0308 0.6763 0.1196 36 1 3.8610 2.3659 -0.4141 37 1 3.9277 0.1929 -4.3274 38 1 6.1405 0.0835 -5.4000 39 1 8.1582 0.6908 -4.1279 40 1 7.9678 1.4133 -1.7827 41 1 5.7582 1.5298 -0.7043 42 1 3.9602 -0.3505 3.6407 43 1 0.1880 -2.7616 -0.3074 44 1 1.8335 -6.0461 2.7963 45 1 2.9061 -4.9508 3.7009 46 1 1.9535 -7.5059 6.1755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065533149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:27 Heat of formation + Delta-G solvation = 126.128823 kcal Electronic energy + Delta-G solvation = -30365.683531 eV Core-core repulsion = 26258.307154 eV Total energy + Delta-G solvation = -4107.376378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.68737 -40.22440 -39.05950 -37.74491 -37.01792 -33.85234 -32.53414 -31.71267 -31.31031 -30.84543 -29.83948 -29.19037 -27.25217 -26.22651 -24.31863 -23.67094 -23.05194 -22.60066 -22.19069 -21.43125 -19.93750 -18.46404 -17.76871 -17.36016 -16.73769 -16.57245 -16.17008 -16.01558 -15.76731 -15.34980 -14.89739 -14.77346 -14.50644 -14.33709 -14.21375 -13.89295 -13.60620 -13.46929 -13.21104 -12.99832 -12.83397 -12.52813 -12.22780 -12.16351 -11.73978 -11.69352 -11.57622 -11.27342 -11.11754 -11.01548 -10.92734 -10.82729 -10.76770 -10.33427 -10.23162 -9.86581 -9.32998 -9.17582 -8.86643 -8.63634 -8.37769 -8.31231 -7.90732 -6.25794 -4.32886 0.99616 1.16974 1.30624 1.70046 2.87473 2.93224 3.09387 3.23143 3.26583 3.30758 3.32560 3.63985 4.16294 4.28765 4.32377 4.57032 4.61493 4.66972 4.73971 4.85302 4.95139 4.97864 5.03091 5.09684 5.10782 5.20107 5.22019 5.26663 5.29625 5.40098 5.45972 5.50162 5.58634 5.62463 5.71436 5.83368 6.15975 6.21858 6.24480 6.31144 6.35891 6.57443 6.63120 6.97615 7.00474 7.05189 7.24162 7.34435 7.59258 7.75743 7.85906 8.10543 8.57474 8.70367 9.32255 10.82447 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.002346 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.060983 B =11931.566335 C =12403.749524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.468 5.468 3 C 0.065 3.935 4 C 0.066 3.934 5 O -0.304 6.304 6 C 0.137 3.863 7 C -0.156 4.156 8 C -0.082 4.082 9 C -0.166 4.166 10 C -0.081 4.081 11 C -0.211 4.211 12 C 0.430 3.570 13 N -0.604 5.604 14 C 0.349 3.651 15 N -0.533 5.533 16 C 0.352 3.648 17 C -0.296 4.296 18 C 0.070 3.930 19 N -0.235 5.235 20 N -0.331 5.331 21 C 0.263 3.737 22 C -0.535 4.535 23 H 0.061 0.939 24 C 0.067 3.933 25 N -0.890 5.890 26 Si 0.908 3.092 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.196 0.804 43 H 0.189 0.811 44 H 0.055 0.945 45 H 0.060 0.940 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.549 19.618 -15.989 25.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.184 5.184 3 C -0.062 4.062 4 C -0.009 4.009 5 O -0.217 6.217 6 C 0.091 3.909 7 C -0.174 4.174 8 C -0.101 4.101 9 C -0.184 4.184 10 C -0.099 4.099 11 C -0.230 4.230 12 C 0.181 3.819 13 N -0.330 5.330 14 C 0.055 3.945 15 N -0.255 5.255 16 C 0.103 3.897 17 C -0.313 4.313 18 C -0.125 4.125 19 N -0.051 5.051 20 N -0.117 5.117 21 C 0.147 3.853 22 C -0.574 4.574 23 H 0.079 0.921 24 C -0.136 4.136 25 N -0.528 5.528 26 Si 0.734 3.266 27 H -0.200 1.200 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.213 0.787 43 H 0.206 0.794 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.722 18.108 -15.607 24.368 hybrid contribution -0.788 0.655 1.111 1.512 sum 3.935 18.763 -14.496 24.035 Atomic orbital electron populations 1.22653 0.82717 1.04335 1.02327 1.58593 1.09591 1.14646 1.35602 1.22178 0.94300 0.87743 1.01944 1.22852 0.97985 0.99687 0.80387 1.86120 1.26124 1.82250 1.27233 1.19078 0.84469 0.94824 0.92504 1.20458 0.98602 1.05405 0.92967 1.20955 0.91705 0.97739 0.99655 1.21034 0.98606 1.03757 0.95027 1.20952 0.96801 0.97258 0.94862 1.21317 0.92777 1.07951 1.00958 1.19477 0.88681 0.88501 0.85245 1.68247 1.18766 1.38979 1.06964 1.24486 0.93303 0.85644 0.91042 1.67514 1.16962 1.10127 1.30884 1.19027 0.92080 0.87909 0.90653 1.19653 1.11543 0.96455 1.03640 1.23580 0.99107 0.89749 1.00020 1.76994 1.09493 1.21824 0.96740 1.49533 1.32970 1.08440 1.20773 1.19824 0.98235 0.82832 0.84457 1.21184 1.14245 1.15996 1.05984 0.92118 1.24899 0.96017 0.94652 0.98066 1.69906 1.32552 1.17057 1.33274 0.86394 0.81167 0.77904 0.81089 1.19974 1.20835 1.19978 0.89559 0.89517 0.93834 0.89385 0.89395 0.90466 0.91604 0.85297 0.85588 0.86154 0.85986 0.85482 0.78721 0.79394 0.92659 0.92255 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.31 60.06 0.56 0.80 16 2 N -0.47 -5.61 4.67 -180.65 -0.84 -6.46 16 3 C 0.06 0.63 5.02 -3.82 -0.02 0.61 16 4 C 0.07 0.69 4.80 37.16 0.18 0.87 16 5 O -0.30 -3.71 10.08 -19.40 -0.20 -3.90 16 6 C 0.14 1.62 6.69 -39.21 -0.26 1.36 16 7 C -0.16 -1.67 9.99 -39.43 -0.39 -2.07 16 8 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 9 C -0.17 -1.50 10.04 -39.56 -0.40 -1.90 16 10 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 11 C -0.21 -2.27 9.04 -39.43 -0.36 -2.63 16 12 C 0.43 6.58 6.04 -154.86 -0.94 5.64 16 13 N -0.60 -8.95 7.36 -13.62 -0.10 -9.05 16 14 C 0.35 5.58 12.24 -92.11 -1.13 4.45 16 15 N -0.53 -10.96 10.47 -13.97 -0.15 -11.10 16 16 C 0.35 7.66 8.04 -156.23 -1.26 6.40 16 17 C -0.30 -5.38 5.72 -106.82 -0.61 -5.99 16 18 C 0.07 1.21 10.66 -17.11 -0.18 1.03 16 19 N -0.23 -5.01 12.45 30.80 0.38 -4.63 16 20 N -0.33 -7.85 3.63 -61.65 -0.22 -8.08 16 21 C 0.26 6.97 6.19 -5.20 -0.03 6.94 16 22 C -0.54 -15.12 9.39 -34.44 -0.32 -15.44 16 23 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 24 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 25 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 26 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.87 4.96 -51.93 -0.26 0.61 16 32 H 0.04 0.40 8.13 -51.93 -0.42 -0.03 16 33 H 0.09 0.85 7.27 -51.93 -0.38 0.47 16 34 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 35 H 0.08 0.95 6.18 -51.93 -0.32 0.63 16 36 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 37 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 42 H 0.20 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.19 2.37 6.97 -52.48 -0.37 2.00 16 44 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -33.20 387.76 -11.43 -44.64 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -5.81 Total: 1.60 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -6.05 Total: -0.46 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.19 Total: -64.17 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.90 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.20 -11.43 -44.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065533149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.765 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds