Wall clock time and date at job start Tue Mar 31 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00293 * 2 1 4 4 H 1.48504 * 109.47004 * 269.99720 * 3 2 1 5 5 H 1.48502 * 109.46965 * 29.99463 * 3 2 1 6 6 H 1.48494 * 109.47603 * 149.99846 * 3 2 1 7 7 C 1.37881 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00156 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99809 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46954 * 179.97438 * 9 7 2 11 11 N 1.40063 * 125.87377 * 269.97420 * 10 9 7 12 12 C 1.30255 * 109.69995 * 180.02562 * 11 10 9 13 13 C 1.41162 * 108.46926 * 0.02562 * 12 11 10 14 14 C 1.36322 * 125.87716 * 89.99705 * 10 9 7 15 15 N 1.33187 * 134.61646 * 359.97438 * 14 10 9 16 16 C 1.31511 * 120.68292 * 180.02562 * 15 14 10 17 17 N 1.32112 * 122.64935 * 0.02562 * 16 15 14 18 18 C 1.32871 * 121.19498 * 359.74510 * 17 16 15 19 19 N 1.38209 * 120.81326 * 180.02562 * 18 17 16 20 20 C 1.39791 * 120.00152 * 6.26831 * 19 18 17 21 21 C 1.38898 * 120.07489 * 214.34370 * 20 19 18 22 22 C 1.38109 * 119.92649 * 179.74292 * 21 20 19 23 23 C 1.38288 * 120.06676 * 0.53466 * 22 21 20 24 24 C 1.50706 * 119.92124 * 179.74518 * 23 22 21 25 25 C 1.50697 * 109.46801 * 269.97791 * 24 23 22 26 26 N 1.34787 * 120.00099 * 180.02562 * 25 24 23 27 27 O 1.21277 * 120.00476 * 359.97438 * 25 24 23 28 28 C 1.38279 * 120.15245 * 359.71923 * 23 22 21 29 29 C 1.38102 * 120.07451 * 0.02562 * 28 23 22 30 30 H 0.96998 * 119.99678 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47458 * 59.99815 * 9 7 2 32 32 H 1.08999 * 109.47099 * 299.99369 * 9 7 2 33 33 H 1.07993 * 125.76459 * 180.02562 * 12 11 10 34 34 H 1.08003 * 118.67369 * 179.97438 * 16 15 14 35 35 H 0.97004 * 120.00001 * 186.26654 * 19 18 17 36 36 H 1.08004 * 120.03797 * 0.02562 * 21 20 19 37 37 H 1.07993 * 119.96278 * 180.27761 * 22 21 20 38 38 H 1.08996 * 109.46973 * 29.97282 * 24 23 22 39 39 H 1.08993 * 109.47358 * 149.97876 * 24 23 22 40 40 H 0.97001 * 119.99567 * 359.97438 * 26 25 24 41 41 H 0.96988 * 120.00355 * 179.97438 * 26 25 24 42 42 H 1.08004 * 119.96358 * 180.02562 * 28 23 22 43 43 H 1.08004 * 120.03474 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 7 2.7359 -4.2369 -1.1344 12 6 3.5485 -5.1881 -0.7716 13 6 3.5849 -5.2313 0.6389 14 6 2.7221 -4.2200 1.1051 15 7 2.5795 -4.0524 2.4187 16 6 3.2327 -4.8158 3.2674 17 7 4.0532 -5.7750 2.8775 18 6 4.2588 -6.0231 1.5885 19 7 5.1186 -7.0290 1.1895 20 6 5.6829 -7.8843 2.1404 21 6 6.9714 -8.3710 1.9613 22 6 7.5278 -9.2116 2.9053 23 6 6.7994 -9.5776 4.0224 24 6 7.4077 -10.4997 5.0475 25 6 7.0949 -11.9288 4.6860 26 7 7.5400 -12.9341 5.4658 27 8 6.4420 -12.1745 3.6940 28 6 5.5144 -9.0991 4.2011 29 6 4.9540 -8.2540 3.2636 30 1 -0.4849 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 4.1010 -5.8344 -1.4374 34 1 3.0932 -4.6514 4.3256 35 1 5.3306 -7.1414 0.2496 36 1 7.5393 -8.0887 1.0871 37 1 8.5313 -9.5867 2.7689 38 1 8.4882 -10.3582 5.0677 39 1 6.9933 -10.2745 6.0301 40 1 8.0619 -12.7376 6.2595 41 1 7.3384 -13.8539 5.2334 42 1 4.9484 -9.3866 5.0748 43 1 3.9501 -7.8809 3.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065540466.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:50 Heat of formation + Delta-G solvation = 108.791509 kcal Electronic energy + Delta-G solvation = -28936.420991 eV Core-core repulsion = 24790.178379 eV Total energy + Delta-G solvation = -4146.242612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.139 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54583 -40.24420 -39.30897 -38.27038 -36.27040 -34.04539 -33.82569 -32.77472 -31.62624 -31.43713 -30.90920 -29.62196 -27.44407 -26.76065 -24.20446 -23.67866 -22.77717 -22.63631 -21.82540 -20.65015 -20.05013 -18.27884 -17.90744 -17.77194 -17.08070 -16.77118 -16.57786 -16.29947 -15.73212 -15.48864 -15.13791 -14.75663 -14.61474 -14.22611 -14.19364 -14.01821 -13.70010 -13.56087 -13.36022 -13.22552 -12.79305 -12.35570 -12.20444 -11.78846 -11.69177 -11.63020 -11.13620 -11.05622 -11.00363 -10.78436 -10.36987 -10.30415 -10.16472 -10.08218 -10.02927 -9.63289 -8.98080 -8.77506 -8.69108 -8.61261 -8.12782 -7.52886 -6.23567 -4.30240 0.93498 1.41403 1.45323 1.87825 2.30972 2.83040 2.94658 3.03170 3.17196 3.23603 3.29256 3.35144 3.80100 4.28143 4.33507 4.40019 4.46698 4.62991 4.67550 4.75958 4.83135 4.92509 4.99857 5.04202 5.11735 5.12036 5.33101 5.40918 5.58788 5.64761 5.74061 5.95045 6.19144 6.29781 6.32492 6.37413 6.50847 6.61633 6.77577 6.91736 6.98579 7.03216 7.05817 7.21563 7.44356 7.68777 7.83914 7.88689 7.91013 8.15396 8.66925 8.75368 9.34907 10.84670 Molecular weight = 352.14amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.001888 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.381172 B =14827.276395 C =15046.607092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.238 5.238 12 C 0.067 3.933 13 C -0.329 4.329 14 C 0.364 3.636 15 N -0.546 5.546 16 C 0.363 3.637 17 N -0.603 5.603 18 C 0.500 3.500 19 N -0.648 5.648 20 C 0.169 3.831 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.096 4.096 24 C -0.098 4.098 25 C 0.515 3.485 26 N -0.862 5.862 27 O -0.530 6.530 28 C -0.084 4.084 29 C -0.108 4.108 30 H 0.268 0.732 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.185 0.815 34 H 0.198 0.802 35 H 0.419 0.581 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.120 0.880 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.758 -23.658 11.409 31.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.053 5.053 12 C -0.128 4.128 13 C -0.347 4.347 14 C 0.115 3.885 15 N -0.270 5.270 16 C 0.069 3.931 17 N -0.332 5.332 18 C 0.249 3.751 19 N -0.273 5.273 20 C 0.074 3.926 21 C -0.172 4.172 22 C -0.104 4.104 23 C -0.098 4.098 24 C -0.138 4.138 25 C 0.299 3.701 26 N -0.426 5.426 27 O -0.405 6.405 28 C -0.103 4.103 29 C -0.129 4.129 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.202 0.798 34 H 0.214 0.786 35 H 0.257 0.743 36 H 0.141 0.859 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.229 0.771 41 H 0.230 0.770 42 H 0.138 0.862 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.245 -22.455 10.647 29.155 hybrid contribution 1.206 0.150 -0.248 1.241 sum 16.452 -22.305 10.399 29.602 Atomic orbital electron populations 1.69918 1.06002 1.27672 1.49228 1.24899 0.94990 0.99372 0.94399 0.86333 0.79710 0.82181 0.78306 1.20335 1.20774 1.19762 1.21239 0.93553 0.89643 1.52892 0.92031 1.19830 0.85656 0.79790 1.00099 1.49507 1.35762 1.27712 0.98710 1.76961 1.11195 1.07819 1.09351 1.23413 0.99222 0.97946 0.92206 1.19605 1.11828 1.07824 0.95404 1.18940 0.91111 0.89877 0.88552 1.67521 1.29252 1.30211 0.99992 1.24506 0.85296 0.83931 0.99329 1.68096 1.25699 1.25115 1.14270 1.17873 0.84679 0.83977 0.88523 1.41817 1.46467 1.29791 1.09208 1.17674 0.91796 0.91909 0.91243 1.20779 0.93319 1.01962 1.01139 1.20615 0.99371 0.97238 0.93192 1.19107 0.95208 0.99276 0.96166 1.20597 1.02882 0.90434 0.99845 1.20730 0.78678 0.87799 0.82868 1.43932 1.58786 1.09698 1.30170 1.90794 1.38245 1.85048 1.26424 1.20772 0.94155 0.96493 0.98902 1.21075 1.00671 0.97117 0.94021 0.92231 0.92705 0.92157 0.79848 0.78564 0.74280 0.85903 0.86260 0.88055 0.87932 0.77148 0.76950 0.86188 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.22 9.39 -34.44 -0.32 -15.55 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.26 6.98 6.19 -5.19 -0.03 6.95 16 10 N -0.33 -7.85 3.63 -61.64 -0.22 -8.08 16 11 N -0.24 -5.04 12.45 30.80 0.38 -4.65 16 12 C 0.07 1.13 11.88 -17.11 -0.20 0.92 16 13 C -0.33 -5.93 6.14 -106.82 -0.66 -6.59 16 14 C 0.36 7.94 8.04 -156.23 -1.26 6.68 16 15 N -0.55 -11.33 10.47 -13.97 -0.15 -11.48 16 16 C 0.36 5.98 12.24 -92.12 -1.13 4.85 16 17 N -0.60 -9.54 7.40 -13.60 -0.10 -9.64 16 18 C 0.50 7.82 7.25 -154.75 -1.12 6.70 16 19 N -0.65 -7.91 5.46 -9.67 -0.05 -7.96 16 20 C 0.17 2.04 6.27 -83.74 -0.53 1.52 16 21 C -0.15 -1.56 9.97 -39.38 -0.39 -1.95 16 22 C -0.09 -0.81 9.69 -39.61 -0.38 -1.19 16 23 C -0.10 -0.90 4.38 -104.59 -0.46 -1.36 16 24 C -0.10 -0.56 5.83 -29.03 -0.17 -0.73 16 25 C 0.51 3.93 8.09 -10.98 -0.09 3.84 16 26 N -0.86 -3.06 8.87 31.22 0.28 -2.79 16 27 O -0.53 -6.82 16.87 5.56 0.09 -6.72 16 28 C -0.08 -0.89 9.69 -39.62 -0.38 -1.27 16 29 C -0.11 -1.34 8.60 -39.38 -0.34 -1.68 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.20 2.42 8.06 -52.48 -0.42 1.99 16 35 H 0.42 3.96 8.70 -40.82 -0.36 3.61 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 38 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.10 0.37 8.08 -51.93 -0.42 -0.05 16 40 H 0.40 0.11 8.83 -40.82 -0.36 -0.26 16 41 H 0.40 1.28 8.93 -40.82 -0.36 0.91 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.14 1.84 6.43 -52.48 -0.34 1.50 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -37.13 380.15 -10.64 -47.77 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.76 Total: 3.17 kcal Atomic # 6 Polarization: 10.49 SS G_CDS: -7.56 Total: 2.93 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: 0.87 Total: -69.54 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.09 Total: -6.72 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.13 -10.64 -47.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065540466.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.563 kcal (2) G-P(sol) polarization free energy of solvation -37.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds