Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.38559 * 110.99897 * 2 1 4 4 C 1.38892 * 120.74805 * 88.70103 * 3 2 1 5 5 C 1.38011 * 119.90193 * 181.12085 * 4 3 2 6 6 C 1.38616 * 120.64576 * 0.26038 * 5 4 3 7 7 C 1.37934 * 120.30245 * 359.93492 * 6 5 4 8 8 C 1.39304 * 119.58245 * 359.36020 * 7 6 5 9 9 C 1.47622 * 121.23361 * 181.50107 * 8 7 6 10 10 O 1.21607 * 121.24240 * 347.08251 * 9 8 7 11 11 N 1.35272 * 117.51041 * 167.08526 * 9 8 7 12 12 C 1.46311 * 111.00030 * 233.70110 * 2 1 3 13 13 H 1.09000 * 109.12268 * 193.51412 * 12 2 1 14 14 C 1.50702 * 109.11839 * 312.58712 * 12 2 1 15 15 C 1.38283 * 119.97002 * 321.98594 * 14 12 2 16 16 C 1.38251 * 120.11242 * 179.97438 * 15 14 12 17 17 C 1.38166 * 120.05186 * 359.95733 * 16 15 14 18 18 C 1.38715 * 119.94567 * 0.02562 * 17 16 15 19 19 O 1.35900 * 120.05455 * 179.97438 * 18 17 16 20 20 C 1.42907 * 116.99909 * 359.97438 * 19 18 17 21 21 C 1.52998 * 109.46829 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.47159 * 179.97438 * 21 20 19 23 23 H 1.07998 * 119.99641 * 0.02562 * 22 21 20 24 24 C 1.37871 * 120.00125 * 179.97438 * 22 21 20 25 25 N 1.31515 * 120.00111 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00071 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47505 * 59.99766 * 26 24 22 28 28 H 1.48498 * 109.47410 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47060 * 300.00086 * 26 24 22 30 30 C 1.38125 * 119.97097 * 141.70486 * 14 12 2 31 31 H 1.08997 * 109.46789 * 66.95355 * 1 2 3 32 32 H 1.08995 * 109.47042 * 186.95444 * 1 2 3 33 33 H 1.09003 * 109.46570 * 306.95387 * 1 2 3 34 34 H 1.07998 * 120.04846 * 1.14116 * 4 3 2 35 35 H 1.07997 * 119.68075 * 180.28199 * 5 4 3 36 36 H 1.07996 * 119.84842 * 179.65945 * 6 5 4 37 37 H 1.08004 * 120.20612 * 179.58586 * 7 6 5 38 38 H 0.96997 * 120.18245 * 172.64218 * 11 9 8 39 39 H 1.08003 * 119.94817 * 359.97438 * 15 14 12 40 40 H 1.08000 * 119.97497 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.02719 * 179.97438 * 17 16 15 42 42 H 1.08994 * 109.46846 * 299.99990 * 20 19 18 43 43 H 1.09005 * 109.47068 * 60.00080 * 20 19 18 44 44 H 1.09006 * 109.47195 * 299.99833 * 21 20 19 45 45 H 1.08996 * 109.47174 * 60.00095 * 21 20 19 46 46 H 0.97001 * 120.00163 * 179.97438 * 25 24 22 47 47 H 1.07992 * 120.02874 * 0.02562 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9656 1.2936 0.0000 4 6 2.1948 1.9662 1.1934 5 6 2.6678 3.2626 1.1726 6 6 2.9129 3.9060 -0.0304 7 6 2.6876 3.2560 -1.2260 8 6 2.2242 1.9423 -1.2178 9 6 2.0020 1.2012 -2.4750 10 8 1.9897 1.7709 -3.5493 11 7 1.8126 -0.1353 -2.3873 12 6 1.9934 -0.8086 -1.1009 13 1 3.0562 -0.9875 -0.9378 14 6 1.2707 -2.1307 -1.1299 15 6 0.9317 -2.7589 0.0545 16 6 0.2682 -3.9715 0.0312 17 6 -0.0585 -4.5585 -1.1761 18 6 0.2802 -3.9302 -2.3656 19 8 -0.0396 -4.5058 -3.5544 20 6 -0.7244 -5.7592 -3.5050 21 6 -0.9981 -6.2471 -4.9290 22 6 -1.7197 -7.5692 -4.8770 23 1 -1.9594 -8.0163 -3.9236 24 6 -2.0747 -8.2073 -6.0464 25 7 -1.7832 -7.6625 -7.2074 26 14 -2.9697 -9.8456 -5.9820 27 1 -4.2563 -9.6788 -5.2595 28 1 -3.2353 -10.3194 -7.3640 29 1 -2.1284 -10.8416 -5.2709 30 6 0.9425 -2.7112 -2.3395 31 1 -0.3633 0.4023 -0.9456 32 1 -0.3633 -1.0201 0.1244 33 1 -0.3632 0.6178 0.8213 34 1 2.0035 1.4754 2.1362 35 1 2.8491 3.7806 2.1027 36 1 3.2778 4.9225 -0.0317 37 1 2.8728 3.7612 -2.1625 38 1 1.5580 -0.6444 -3.1727 39 1 1.1856 -2.3013 0.9993 40 1 0.0049 -4.4604 0.9576 41 1 -0.5764 -5.5060 -1.1938 42 1 -0.1073 -6.4899 -2.9824 43 1 -1.6692 -5.6364 -2.9754 44 1 -1.6155 -5.5162 -5.4512 45 1 -0.0536 -6.3698 -5.4589 46 1 -2.0326 -8.1116 -8.0302 47 1 1.2038 -2.2183 -3.2641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065607498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = 2.481618 kcal Electronic energy + Delta-G solvation = -29946.503165 eV Core-core repulsion = 25866.898202 eV Total energy + Delta-G solvation = -4079.604963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77305 -39.95256 -38.52298 -38.27953 -36.69137 -34.12800 -33.44345 -31.90342 -31.32326 -30.96758 -29.87371 -29.14431 -27.34908 -25.34698 -24.78747 -24.46663 -22.58618 -22.13873 -21.58980 -20.51837 -19.77914 -18.35352 -18.28026 -17.10425 -16.83261 -16.31842 -16.03777 -15.79901 -15.62559 -15.45611 -15.21088 -14.97026 -14.82188 -14.59175 -14.50705 -14.15842 -13.87921 -13.62623 -13.22987 -12.99661 -12.85290 -12.52151 -12.47467 -12.35595 -12.14744 -11.87463 -11.60870 -11.44898 -11.36296 -10.90172 -10.84441 -10.58273 -10.32856 -9.96367 -9.89358 -9.72411 -9.59922 -9.40122 -9.36976 -8.97688 -8.80777 -8.49142 -8.00247 -6.14281 -4.19666 0.38361 0.87710 1.14819 1.46527 2.44999 2.80476 3.09295 3.25585 3.30235 3.31625 3.41242 3.64387 3.73173 4.05971 4.18582 4.37536 4.44325 4.55963 4.79101 4.79866 4.85016 4.94222 5.02706 5.13512 5.16618 5.20658 5.22003 5.24934 5.38862 5.51382 5.51971 5.58679 5.71164 5.79231 5.87136 5.92867 5.93741 5.99039 6.08530 6.23176 6.30472 6.39131 6.43278 6.50486 6.59731 6.69795 6.79086 6.90945 7.42626 7.57492 7.72781 7.83672 7.94974 8.17919 8.85558 9.44947 10.97103 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.022982 B = 0.001931 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.035716 B =14500.463508 C =15472.698231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.495 5.495 3 C 0.134 3.866 4 C -0.114 4.114 5 C -0.082 4.082 6 C -0.138 4.138 7 C -0.046 4.046 8 C -0.176 4.176 9 C 0.565 3.435 10 O -0.526 6.526 11 N -0.746 5.746 12 C 0.355 3.645 13 H 0.110 0.890 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.078 4.078 17 C -0.203 4.203 18 C 0.152 3.848 19 O -0.314 6.314 20 C 0.065 3.935 21 C 0.025 3.975 22 C -0.529 4.529 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.888 5.888 26 Si 0.900 3.100 27 H -0.275 1.275 28 H -0.285 1.285 29 H -0.275 1.275 30 C -0.154 4.154 31 H 0.038 0.962 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.410 0.590 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.956 20.282 21.519 30.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.214 5.214 3 C 0.037 3.963 4 C -0.134 4.134 5 C -0.101 4.101 6 C -0.156 4.156 7 C -0.065 4.065 8 C -0.182 4.182 9 C 0.353 3.647 10 O -0.403 6.403 11 N -0.407 5.407 12 C 0.163 3.837 13 H 0.127 0.873 14 C -0.070 4.070 15 C -0.162 4.162 16 C -0.096 4.096 17 C -0.222 4.222 18 C 0.104 3.896 19 O -0.227 6.227 20 C -0.009 4.009 21 C -0.012 4.012 22 C -0.567 4.567 23 H 0.076 0.924 24 C -0.142 4.142 25 N -0.526 5.526 26 Si 0.727 3.273 27 H -0.201 1.201 28 H -0.211 1.211 29 H -0.201 1.201 30 C -0.174 4.174 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.136 20.443 21.101 30.767 hybrid contribution -0.901 -1.068 -0.900 1.662 sum 8.235 19.375 20.201 29.177 Atomic orbital electron populations 1.22704 0.83693 1.04772 1.01601 1.59002 1.09961 1.10558 1.41904 1.18792 0.96679 0.88307 0.92508 1.20911 1.00756 0.94675 0.97027 1.21298 0.96158 0.94198 0.98428 1.21198 1.01805 1.00627 0.91969 1.21132 0.94042 0.92172 0.99166 1.20481 1.08655 0.96137 0.92906 1.18297 0.75742 0.82038 0.88654 1.90836 1.50273 1.69150 1.30016 1.47160 1.71742 1.08459 1.13368 1.20391 0.99015 0.87465 0.76804 0.87304 1.19261 0.99621 0.94562 0.93589 1.20732 1.01996 0.95987 0.97438 1.20943 0.96678 0.94645 0.97357 1.21493 1.05972 1.02529 0.92230 1.19052 0.92694 0.91926 0.85902 1.86196 1.72108 1.38088 1.26272 1.23381 0.93871 0.80105 1.03541 1.19128 0.98047 0.96019 0.87992 1.20910 1.38317 1.04671 0.92803 0.92400 1.24992 0.95810 0.98056 0.95314 1.69963 1.46289 1.38979 0.97394 0.86536 0.80119 0.83436 0.77212 1.20086 1.21085 1.20080 1.20036 1.04238 0.95460 0.97627 0.94324 0.88607 0.90530 0.84534 0.85108 0.85136 0.84598 0.74786 0.84896 0.85616 0.84899 0.92956 0.93001 0.95378 0.95358 0.92585 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 8.75 60.07 0.53 0.67 16 2 N -0.49 -4.37 4.07 -176.72 -0.72 -5.09 16 3 C 0.13 1.21 4.86 -83.77 -0.41 0.81 16 4 C -0.11 -0.79 9.98 -39.42 -0.39 -1.18 16 5 C -0.08 -0.48 10.02 -39.53 -0.40 -0.87 16 6 C -0.14 -0.91 10.03 -39.55 -0.40 -1.30 16 7 C -0.05 -0.42 9.66 -39.30 -0.38 -0.80 16 8 C -0.18 -1.90 5.80 -104.86 -0.61 -2.51 16 9 C 0.56 7.43 7.95 -12.21 -0.10 7.33 16 10 O -0.53 -8.64 17.48 5.27 0.09 -8.55 16 11 N -0.75 -8.62 5.12 -59.10 -0.30 -8.92 16 12 C 0.36 3.53 3.29 -129.19 -0.43 3.10 16 13 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 14 C -0.07 -0.75 4.54 -104.65 -0.47 -1.23 16 15 C -0.14 -1.41 7.22 -39.56 -0.29 -1.69 16 16 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 16 17 C -0.20 -2.78 9.04 -39.43 -0.36 -3.13 16 18 C 0.15 2.39 6.69 -39.22 -0.26 2.12 16 19 O -0.31 -6.09 10.14 -19.42 -0.20 -6.28 16 20 C 0.06 1.33 4.68 37.16 0.17 1.50 16 21 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 22 C -0.53 -14.47 9.11 -34.44 -0.31 -14.78 16 23 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 24 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 25 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 26 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 C -0.15 -2.06 9.19 -39.43 -0.36 -2.42 16 31 H 0.04 0.40 7.94 -51.93 -0.41 -0.01 16 32 H 0.10 0.84 5.23 -51.93 -0.27 0.57 16 33 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 36 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 37 H 0.14 1.24 7.83 -52.48 -0.41 0.83 16 38 H 0.41 4.84 6.08 -40.82 -0.25 4.59 16 39 H 0.13 1.07 7.55 -52.48 -0.40 0.67 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.81 6.30 -52.49 -0.33 1.48 16 42 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 43 H 0.05 1.00 7.66 -51.93 -0.40 0.60 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.13 1.63 5.86 -52.49 -0.31 1.32 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -32.00 385.50 -10.80 -42.80 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.09 Total: 3.22 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -5.10 Total: -13.52 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: -0.29 Total: -39.48 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.10 Total: -14.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.00 -10.80 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065607498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.284 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds