Wall clock time and date at job start Tue Mar 31 2020 05:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38084 * 120.06722 * 2 1 4 4 C 1.38566 * 120.66723 * 179.80952 * 3 2 1 5 5 C 1.38003 * 120.32009 * 0.38521 * 4 3 2 6 6 C 1.39173 * 119.54031 * 359.72820 * 5 4 3 7 7 C 1.38771 * 120.06500 * 180.27929 * 2 1 3 8 8 N 1.38541 * 121.06597 * 0.28303 * 7 2 1 9 9 C 1.46412 * 112.42679 * 215.88048 * 8 7 2 10 10 H 1.09002 * 109.12373 * 186.18501 * 9 8 7 11 11 C 1.50699 * 109.12558 * 67.02858 * 9 8 7 12 12 C 1.38289 * 119.96828 * 29.72433 * 11 9 8 13 13 C 1.38247 * 120.10708 * 179.72400 * 12 11 9 14 14 C 1.38170 * 120.05842 * 0.55063 * 13 12 11 15 15 C 1.38711 * 119.93707 * 359.72508 * 14 13 12 16 16 O 1.35906 * 120.05082 * 179.97438 * 15 14 13 17 17 C 1.42894 * 117.00184 * 0.02562 * 16 15 14 18 18 C 1.53002 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47274 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99962 * 0.02562 * 19 18 17 21 21 C 1.37873 * 120.00051 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99966 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 119.99956 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47203 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.46985 * 120.00325 * 23 21 19 26 26 H 1.48504 * 109.46722 * 240.00095 * 23 21 19 27 27 C 1.38117 * 119.97299 * 209.99786 * 11 9 8 28 28 N 1.46277 * 111.23925 * 306.63234 * 9 8 7 29 29 C 1.35430 * 119.67681 * 37.28856 * 28 9 8 30 30 O 1.21601 * 121.35023 * 177.37353 * 29 28 9 31 31 H 1.09001 * 109.46953 * 269.71989 * 1 2 3 32 32 H 1.09000 * 109.47318 * 29.71587 * 1 2 3 33 33 H 1.09000 * 109.47161 * 149.72217 * 1 2 3 34 34 H 1.08003 * 119.66439 * 0.06345 * 3 2 1 35 35 H 1.07997 * 119.83772 * 180.11309 * 4 3 2 36 36 H 1.07995 * 120.23310 * 179.75444 * 5 4 3 37 37 H 1.00897 * 110.99777 * 90.87539 * 8 7 2 38 38 H 1.08000 * 119.94843 * 359.97438 * 12 11 9 39 39 H 1.07997 * 119.97598 * 180.25478 * 13 12 11 40 40 H 1.07998 * 120.03327 * 179.70383 * 14 13 12 41 41 H 1.09001 * 109.47350 * 300.00175 * 17 16 15 42 42 H 1.09008 * 109.46873 * 60.00226 * 17 16 15 43 43 H 1.09001 * 109.47208 * 300.00452 * 18 17 16 44 44 H 1.08996 * 109.46777 * 59.99982 * 18 17 16 45 45 H 0.97000 * 119.99443 * 179.97438 * 22 21 19 46 46 H 1.08008 * 120.02795 * 0.02562 * 27 11 9 47 47 H 0.96999 * 120.15992 * 217.30322 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1989 1.1950 0.0000 4 6 3.5845 1.2095 0.0040 5 6 4.2936 0.0257 0.0000 6 6 3.6075 -1.1852 -0.0023 7 6 2.2023 -1.2010 -0.0059 8 7 1.5334 -2.4142 -0.0176 9 6 2.2206 -3.4386 0.7710 10 1 1.7125 -4.3935 0.6365 11 6 2.1729 -3.0549 2.2276 12 6 1.1113 -2.3128 2.7120 13 6 1.0618 -1.9641 4.0489 14 6 2.0789 -2.3469 4.9021 15 6 3.1476 -3.0865 4.4173 16 8 4.1496 -3.4638 5.2544 17 6 4.0375 -3.0645 6.6218 18 6 5.2484 -3.5774 7.4038 19 6 5.1299 -3.1569 8.8461 20 1 4.2760 -2.5817 9.1725 21 6 6.1115 -3.5064 9.7490 22 7 7.1515 -4.2063 9.3515 23 14 5.9648 -2.9845 11.5367 24 1 4.7119 -2.2100 11.7251 25 1 5.9375 -4.1898 12.4035 26 1 7.1290 -2.1381 11.9023 27 6 3.1922 -3.4401 3.0763 28 7 3.6172 -3.5767 0.3585 29 6 4.3231 -2.4770 0.0027 30 8 5.4986 -2.5504 -0.2998 31 1 -0.3633 -0.0050 1.0277 32 1 -0.3634 0.8925 -0.5094 33 1 -0.3633 -0.8875 -0.5181 34 1 1.6545 2.1278 0.0010 35 1 4.1120 2.1519 0.0058 36 1 5.3735 0.0386 -0.0009 37 1 1.3755 -2.7308 -0.9625 38 1 0.3177 -2.0084 2.0457 39 1 0.2297 -1.3879 4.4258 40 1 2.0422 -2.0702 5.9454 41 1 4.0005 -1.9768 6.6809 42 1 3.1259 -3.4829 7.0489 43 1 5.2850 -4.6652 7.3447 44 1 6.1601 -3.1595 6.9769 45 1 7.8423 -4.4518 9.9867 46 1 4.0234 -4.0156 2.6965 47 1 4.0355 -4.4516 0.3396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065607870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:21 Heat of formation + Delta-G solvation = -16.383501 kcal Electronic energy + Delta-G solvation = -30552.627016 eV Core-core repulsion = 26472.204001 eV Total energy + Delta-G solvation = -4080.423016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.54888 -39.68297 -38.58150 -37.87443 -36.38917 -33.74713 -33.38620 -32.68177 -31.24588 -30.80968 -29.80645 -29.05510 -27.09349 -25.55576 -24.77923 -24.32299 -22.53872 -21.96031 -21.28875 -20.50408 -19.51795 -18.02379 -17.88747 -17.79384 -16.91120 -16.23954 -15.79088 -15.70466 -15.45664 -15.34813 -15.14791 -14.99425 -14.67512 -14.43527 -14.18002 -13.79834 -13.67189 -13.60892 -13.17413 -12.83966 -12.66168 -12.54068 -12.33744 -12.25369 -11.98817 -11.72537 -11.52557 -11.40104 -11.31005 -10.90664 -10.75051 -10.51298 -10.29909 -10.11209 -9.87766 -9.67663 -9.57539 -9.29714 -9.11570 -8.80944 -8.64100 -8.46251 -7.86465 -6.11210 -4.16037 0.54488 1.01573 1.33592 1.66149 2.50679 2.89183 3.25820 3.28776 3.33022 3.36519 3.50630 3.82042 3.88856 4.14055 4.38088 4.46732 4.52453 4.65491 4.77285 4.93932 4.98388 5.00311 5.15392 5.25250 5.26221 5.30731 5.40035 5.44983 5.53531 5.60059 5.71056 5.86588 5.89638 5.94458 6.01206 6.02678 6.07648 6.16998 6.24024 6.38338 6.49274 6.52324 6.53648 6.59505 6.70202 6.81822 6.91198 6.96080 7.49505 7.62830 7.79956 7.89906 8.04329 8.22636 8.89757 9.48428 11.00432 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.014254 B = 0.002360 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.918240 B =11861.505426 C =12155.818442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.081 4.081 3 C -0.086 4.086 4 C -0.132 4.132 5 C -0.051 4.051 6 C -0.170 4.170 7 C 0.135 3.865 8 N -0.624 5.624 9 C 0.357 3.643 10 H 0.125 0.875 11 C -0.079 4.079 12 C -0.135 4.135 13 C -0.086 4.086 14 C -0.204 4.204 15 C 0.143 3.857 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.025 3.975 19 C -0.526 4.526 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.143 4.143 28 N -0.748 5.748 29 C 0.569 3.431 30 O -0.525 6.525 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.365 0.635 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.130 0.870 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.125 0.875 47 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.976 7.352 -23.571 29.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.083 4.083 3 C -0.104 4.104 4 C -0.150 4.150 5 C -0.071 4.071 6 C -0.176 4.176 7 C 0.038 3.962 8 N -0.257 5.257 9 C 0.163 3.837 10 H 0.142 0.858 11 C -0.081 4.081 12 C -0.154 4.154 13 C -0.104 4.104 14 C -0.222 4.222 15 C 0.096 3.904 16 O -0.229 6.229 17 C -0.008 4.008 18 C -0.012 4.012 19 C -0.564 4.564 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.162 4.162 28 N -0.405 5.405 29 C 0.357 3.643 30 O -0.401 6.401 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.152 0.848 37 H 0.193 0.807 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.143 0.857 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -16.532 7.401 -23.236 29.461 hybrid contribution 0.798 -0.200 0.865 1.194 sum -15.734 7.202 -22.371 28.282 Atomic orbital electron populations 1.20661 0.90068 1.02582 1.02758 1.19613 0.96590 0.90908 1.01177 1.21180 0.94204 0.97517 0.97527 1.21155 0.94171 0.98093 1.01626 1.21069 1.00628 0.90726 0.94659 1.20414 0.93728 0.94291 1.09173 1.18385 0.89235 0.90432 0.98174 1.57318 1.47601 1.01860 1.18930 1.20198 0.78965 0.95191 0.89345 0.85781 1.19591 0.95405 0.99719 0.93412 1.20768 0.99046 1.00340 0.95211 1.20907 0.97650 0.98538 0.93287 1.21444 0.95930 1.03589 1.01282 1.19095 0.87961 0.92844 0.90530 1.86181 1.42162 1.72724 1.21825 1.23332 1.02396 0.98695 0.76388 1.19128 0.91181 0.97614 0.93278 1.21000 1.07238 1.35398 0.92797 0.92317 1.24998 0.95093 0.94916 0.99209 1.69990 1.10084 1.37638 1.35000 0.86431 0.78153 0.78422 0.84384 1.19625 1.20812 1.20816 1.20123 1.00123 1.05108 0.90887 1.46954 1.13728 1.10365 1.69453 1.18352 0.85691 0.84389 0.75899 1.90835 1.14970 1.86161 1.48140 0.90840 0.91955 0.90802 0.85311 0.85199 0.84799 0.80709 0.85159 0.86100 0.85243 0.93192 0.93118 0.95408 0.95417 0.92736 0.85719 0.75407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.60 9.72 36.01 0.35 -0.25 16 2 C -0.08 -0.67 5.89 -104.48 -0.62 -1.29 16 3 C -0.09 -0.68 9.67 -39.52 -0.38 -1.07 16 4 C -0.13 -1.19 10.03 -39.55 -0.40 -1.59 16 5 C -0.05 -0.59 9.67 -39.32 -0.38 -0.97 16 6 C -0.17 -2.04 5.66 -104.83 -0.59 -2.64 16 7 C 0.14 1.28 4.97 -83.77 -0.42 0.86 16 8 N -0.62 -4.48 4.44 -56.41 -0.25 -4.74 16 9 C 0.36 3.03 4.04 -129.13 -0.52 2.50 16 10 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 11 C -0.08 -0.94 4.93 -104.65 -0.52 -1.46 16 12 C -0.13 -1.53 8.85 -39.56 -0.35 -1.88 16 13 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 14 C -0.20 -3.15 9.04 -39.43 -0.36 -3.51 16 15 C 0.14 2.51 6.69 -39.22 -0.26 2.25 16 16 O -0.32 -6.67 10.14 -19.45 -0.20 -6.86 16 17 C 0.07 1.44 4.68 37.16 0.17 1.61 16 18 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 19 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 23 Si 0.90 21.39 29.54 -169.99 -5.02 16.36 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.14 -2.16 9.25 -39.44 -0.36 -2.53 16 28 N -0.75 -7.58 4.14 -59.02 -0.24 -7.82 16 29 C 0.57 7.63 7.87 -12.11 -0.10 7.53 16 30 O -0.53 -8.91 17.57 5.28 0.09 -8.82 16 31 H 0.07 0.44 7.95 -51.93 -0.41 0.03 16 32 H 0.06 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.07 0.38 7.51 -51.93 -0.39 -0.01 16 34 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.56 7.89 -52.49 -0.41 1.15 16 37 H 0.36 1.84 8.83 -39.29 -0.35 1.49 16 38 H 0.13 1.21 7.11 -52.49 -0.37 0.84 16 39 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.13 1.99 6.30 -52.49 -0.33 1.66 16 41 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 42 H 0.05 1.04 7.66 -51.92 -0.40 0.64 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.12 1.89 7.33 -52.48 -0.38 1.51 16 47 H 0.41 3.61 8.95 -40.82 -0.37 3.24 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -34.37 391.29 -10.98 -45.35 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.31 Total: 3.46 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -5.69 Total: -16.85 kcal Atomic # 7 Polarization: -38.78 SS G_CDS: 0.24 Total: -38.54 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.10 Total: -15.68 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.37 -10.98 -45.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065607870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.966 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds