Wall clock time and date at job start Tue Mar 31 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38082 * 120.06908 * 2 1 4 4 C 1.38573 * 120.67436 * 180.02562 * 3 2 1 5 5 C 1.37998 * 120.31213 * 359.82209 * 4 3 2 6 6 C 1.39173 * 119.54862 * 0.02798 * 5 4 3 7 7 C 1.38774 * 120.06670 * 179.97438 * 2 1 3 8 8 N 1.38538 * 121.06752 * 0.30634 * 7 2 1 9 9 C 1.46415 * 112.43517 * 215.91957 * 8 7 2 10 10 H 1.09000 * 109.12206 * 67.03966 * 9 8 7 11 11 C 1.50697 * 109.12515 * 186.19730 * 9 8 7 12 12 C 1.38291 * 119.96932 * 330.01744 * 11 9 8 13 13 C 1.38244 * 120.11051 * 180.02562 * 12 11 9 14 14 C 1.38168 * 120.05137 * 359.68203 * 13 12 11 15 15 C 1.38712 * 119.94909 * 0.57036 * 14 13 12 16 16 O 1.35895 * 120.06010 * 179.72598 * 15 14 13 17 17 C 1.42904 * 116.99841 * 359.72502 * 16 15 14 18 18 C 1.53004 * 109.47050 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46843 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00516 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99783 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99707 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99956 * 180.27458 * 21 19 18 24 24 H 1.48497 * 109.47172 * 179.72730 * 23 21 19 25 25 H 1.48506 * 109.47132 * 299.72429 * 23 21 19 26 26 H 1.48501 * 109.47173 * 59.72550 * 23 21 19 27 27 C 1.38120 * 119.97208 * 150.00174 * 11 9 8 28 28 N 1.46280 * 111.24350 * 306.65051 * 9 8 7 29 29 C 1.35430 * 119.67679 * 37.28694 * 28 9 8 30 30 O 1.21597 * 121.34975 * 177.39026 * 29 28 9 31 31 H 1.09005 * 109.46619 * 270.04278 * 1 2 3 32 32 H 1.09007 * 109.47280 * 30.03875 * 1 2 3 33 33 H 1.08990 * 109.47452 * 150.04458 * 1 2 3 34 34 H 1.08002 * 119.66444 * 359.97438 * 3 2 1 35 35 H 1.07998 * 119.84101 * 179.84903 * 4 3 2 36 36 H 1.08009 * 120.22882 * 180.02562 * 5 4 3 37 37 H 1.00901 * 110.99670 * 90.90774 * 8 7 2 38 38 H 1.07999 * 119.94131 * 0.02562 * 12 11 9 39 39 H 1.07997 * 119.97467 * 179.97438 * 13 12 11 40 40 H 1.08006 * 120.02615 * 180.29966 * 14 13 12 41 41 H 1.09006 * 109.46765 * 60.00306 * 17 16 15 42 42 H 1.08997 * 109.47122 * 300.00278 * 17 16 15 43 43 H 1.09001 * 109.46361 * 60.00569 * 18 17 16 44 44 H 1.08997 * 109.46991 * 300.00459 * 18 17 16 45 45 H 0.97005 * 119.99656 * 179.97438 * 22 21 19 46 46 H 1.07997 * 120.02984 * 0.02562 * 27 11 9 47 47 H 0.96992 * 120.16125 * 217.29790 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.1950 0.0000 4 6 3.5845 1.2096 -0.0005 5 6 4.2935 0.0257 0.0026 6 6 3.6075 -1.1852 0.0058 7 6 2.2022 -1.2010 0.0005 8 7 1.5335 -2.4143 -0.0053 9 6 2.2198 -3.4345 0.7896 10 1 2.1841 -3.1514 1.8416 11 6 1.5176 -4.7556 0.6097 12 6 0.1588 -4.7866 0.3543 13 6 -0.4884 -5.9970 0.1893 14 6 0.2224 -7.1788 0.2728 15 6 1.5844 -7.1506 0.5342 16 8 2.2848 -8.3119 0.6223 17 6 1.5532 -9.5260 0.4410 18 6 2.5028 -10.7183 0.5740 19 6 1.7315 -11.9986 0.3822 20 1 0.6700 -11.9654 0.1856 21 6 2.3806 -13.2127 0.4587 22 7 3.6729 -13.2532 0.6996 23 14 1.4260 -14.7994 0.2134 24 1 2.3485 -15.9564 0.3377 25 1 0.3621 -14.9015 1.2445 26 1 0.8083 -14.8017 -1.1371 27 6 2.2316 -5.9345 0.6998 28 7 3.6170 -3.5746 0.3795 29 6 4.3233 -2.4768 0.0189 30 8 5.4991 -2.5518 -0.2821 31 1 -0.3633 0.0008 1.0277 32 1 -0.3634 0.8897 -0.5145 33 1 -0.3634 -0.8903 -0.5131 34 1 1.6545 2.1278 -0.0004 35 1 4.1119 2.1520 -0.0030 36 1 5.3735 0.0387 0.0026 37 1 1.3763 -2.7360 -0.9486 38 1 -0.3975 -3.8636 0.2835 39 1 -1.5497 -6.0186 -0.0097 40 1 -0.2828 -8.1240 0.1391 41 1 1.0994 -9.5322 -0.5500 42 1 0.7727 -9.5965 1.1986 43 1 2.9569 -10.7123 1.5649 44 1 3.2831 -10.6476 -0.1838 45 1 4.1296 -14.1074 0.7538 46 1 3.2927 -5.9098 0.8995 47 1 4.0354 -4.4496 0.3658 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065607872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:25 Heat of formation + Delta-G solvation = -17.808507 kcal Electronic energy + Delta-G solvation = -29491.213739 eV Core-core repulsion = 25410.728930 eV Total energy + Delta-G solvation = -4080.484809 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52132 -39.93928 -38.67568 -38.03312 -36.50270 -33.82401 -33.43886 -32.85031 -31.61830 -30.94738 -29.73116 -29.08281 -27.15049 -25.65828 -24.87833 -24.44842 -22.54333 -21.86604 -21.50786 -20.48017 -19.92269 -18.37348 -17.95107 -17.41401 -17.02332 -16.26321 -15.90411 -15.80020 -15.60865 -15.44767 -15.14781 -15.05427 -14.93577 -14.52603 -14.36115 -13.98521 -13.74169 -13.70318 -13.20510 -12.97215 -12.74082 -12.66807 -12.37936 -12.34767 -12.10110 -11.88178 -11.61038 -11.52089 -11.44817 -10.91665 -10.84773 -10.58262 -10.36598 -10.17444 -9.95257 -9.72307 -9.59834 -9.36871 -9.25507 -8.98155 -8.76480 -8.49082 -8.02887 -6.14235 -4.19521 0.39790 0.86614 1.15614 1.48382 2.42769 2.82890 3.23901 3.25687 3.30507 3.31884 3.36840 3.67098 3.74391 4.03410 4.21840 4.36643 4.39197 4.51607 4.79309 4.81209 4.85985 4.92287 5.10090 5.15375 5.16830 5.22076 5.26040 5.33967 5.39731 5.41404 5.54811 5.75863 5.79988 5.83784 5.88197 5.93390 5.94022 6.02731 6.14310 6.27799 6.32986 6.40147 6.44362 6.49671 6.60286 6.72296 6.78249 6.89189 7.42876 7.57690 7.73069 7.83172 7.95276 8.18095 8.85679 9.45022 10.97153 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.022149 B = 0.001851 C = 0.001719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.866802 B =15124.741873 C =16281.956977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.081 4.081 3 C -0.085 4.085 4 C -0.133 4.133 5 C -0.052 4.052 6 C -0.175 4.175 7 C 0.129 3.871 8 N -0.625 5.625 9 C 0.360 3.640 10 H 0.108 0.892 11 C -0.074 4.074 12 C -0.143 4.143 13 C -0.078 4.078 14 C -0.203 4.203 15 C 0.151 3.849 16 O -0.314 6.314 17 C 0.065 3.935 18 C 0.025 3.975 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.888 5.888 23 Si 0.900 3.100 24 H -0.285 1.285 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.153 4.153 28 N -0.748 5.748 29 C 0.564 3.436 30 O -0.526 6.526 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.366 0.634 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.133 0.867 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.264 0.736 46 H 0.127 0.873 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 30.646 -0.867 31.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.083 4.083 3 C -0.104 4.104 4 C -0.151 4.151 5 C -0.071 4.071 6 C -0.180 4.180 7 C 0.032 3.968 8 N -0.259 5.259 9 C 0.168 3.832 10 H 0.126 0.874 11 C -0.075 4.075 12 C -0.162 4.162 13 C -0.096 4.096 14 C -0.222 4.222 15 C 0.103 3.897 16 O -0.227 6.227 17 C -0.009 4.009 18 C -0.012 4.012 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.526 5.526 23 Si 0.727 3.273 24 H -0.211 1.211 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.173 4.173 28 N -0.409 5.409 29 C 0.352 3.648 30 O -0.402 6.402 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.196 0.804 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.151 0.849 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.145 0.855 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.643 30.710 -0.488 31.651 hybrid contribution 0.184 -1.688 -0.633 1.812 sum -7.460 29.023 -1.121 29.987 Atomic orbital electron populations 1.20655 0.89879 1.02836 1.02777 1.19673 0.96776 0.90837 1.00970 1.21204 0.94214 0.97520 0.97471 1.21168 0.94141 0.98090 1.01728 1.21070 1.00611 0.90610 0.94815 1.20521 0.93713 0.94421 1.09382 1.18527 0.89299 0.90621 0.98384 1.57549 1.47045 1.01596 1.19715 1.20204 0.77155 0.88747 0.97141 0.87430 1.19313 0.94421 0.91846 1.01969 1.20754 0.93234 0.98373 1.03794 1.20950 0.99643 0.91667 0.97325 1.21504 0.93789 1.00019 1.06850 1.19060 0.90435 0.87174 0.93006 1.86193 1.38527 1.12952 1.85005 1.23382 0.96671 0.81417 0.99441 1.19128 0.94598 0.88607 0.98848 1.20914 0.94973 0.90289 1.50536 0.92399 1.24996 0.94953 0.99361 0.94864 1.69964 1.08331 1.26176 1.48148 0.86535 0.79627 0.82324 0.78813 1.21083 1.20083 1.20081 1.20051 1.00153 0.89572 1.07521 1.47308 1.13248 1.10801 1.69523 1.18357 0.85853 0.84316 0.76306 1.90838 1.15093 1.86163 1.48108 0.90857 0.91855 0.90629 0.85197 0.85140 0.84705 0.80421 0.84825 0.85666 0.84925 0.93009 0.92967 0.95357 0.95374 0.92589 0.85520 0.74912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.53 9.79 36.00 0.35 -0.18 16 2 C -0.08 -0.57 5.89 -104.48 -0.62 -1.19 16 3 C -0.09 -0.53 9.67 -39.52 -0.38 -0.91 16 4 C -0.13 -0.90 10.03 -39.55 -0.40 -1.29 16 5 C -0.05 -0.47 9.67 -39.32 -0.38 -0.85 16 6 C -0.17 -1.84 5.78 -104.83 -0.61 -2.44 16 7 C 0.13 1.13 6.03 -83.77 -0.51 0.62 16 8 N -0.63 -4.92 4.34 -56.41 -0.25 -5.17 16 9 C 0.36 3.36 3.69 -129.12 -0.48 2.88 16 10 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.07 -0.79 5.53 -104.65 -0.58 -1.37 16 12 C -0.14 -1.38 9.16 -39.56 -0.36 -1.75 16 13 C -0.08 -0.84 10.04 -39.60 -0.40 -1.24 16 14 C -0.20 -2.79 9.04 -39.43 -0.36 -3.15 16 15 C 0.15 2.38 6.69 -39.21 -0.26 2.11 16 16 O -0.31 -6.10 10.14 -19.41 -0.20 -6.30 16 17 C 0.06 1.33 4.68 37.16 0.17 1.50 16 18 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 19 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 23 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.15 -2.03 9.10 -39.43 -0.36 -2.39 16 28 N -0.75 -8.27 5.43 -59.02 -0.32 -8.59 16 29 C 0.56 7.23 7.94 -12.11 -0.10 7.14 16 30 O -0.53 -8.55 17.57 5.28 0.09 -8.45 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.24 8.09 -51.92 -0.42 -0.18 16 33 H 0.07 0.39 7.51 -51.93 -0.39 0.00 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.14 1.22 7.89 -52.48 -0.41 0.81 16 37 H 0.37 2.76 8.44 -39.29 -0.33 2.43 16 38 H 0.13 1.01 7.38 -52.49 -0.39 0.62 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.13 1.82 6.30 -52.48 -0.33 1.49 16 41 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 42 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.13 1.60 6.24 -52.49 -0.33 1.28 16 47 H 0.41 4.66 6.36 -40.82 -0.26 4.40 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -32.05 390.60 -11.03 -43.09 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.16 Total: 4.20 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -5.81 Total: -15.20 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.17 Total: -39.23 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.10 Total: -14.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.05 -11.03 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065607872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.277 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds