Wall clock time and date at job start Tue Mar 31 2020 05:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39695 * 120.17045 * 218.77780 * 3 2 1 5 5 C 1.37865 * 119.87052 * 179.97438 * 4 3 2 6 6 S 1.76207 * 119.88723 * 180.02562 * 5 4 3 7 7 O 1.42103 * 106.39808 * 336.45596 * 6 5 4 8 8 O 1.42095 * 106.40009 * 203.53865 * 6 5 4 9 9 N 1.65596 * 107.22020 * 89.99478 * 6 5 4 10 10 C 1.46494 * 120.00265 * 269.99666 * 9 6 5 11 11 C 1.50697 * 109.47607 * 265.00283 * 10 9 6 12 12 H 1.08003 * 119.99367 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00325 * 180.02562 * 11 10 9 14 14 N 1.31506 * 120.00248 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99823 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47243 * 89.99955 * 15 13 11 17 17 H 1.48494 * 109.47087 * 210.00326 * 15 13 11 18 18 H 1.48502 * 109.47238 * 329.99945 * 15 13 11 19 19 C 1.46505 * 119.99655 * 90.00087 * 9 6 5 20 20 C 1.52997 * 109.47212 * 94.99926 * 19 9 6 21 21 C 1.53785 * 113.61570 * 274.13670 * 20 19 9 22 22 C 1.53956 * 87.02052 * 220.04627 * 21 20 19 23 23 C 1.53777 * 87.11087 * 25.36196 * 22 21 20 24 24 C 1.38439 * 120.22343 * 0.27285 * 5 4 3 25 25 C 1.38234 * 120.34641 * 359.45155 * 24 5 4 26 26 C 1.38285 * 120.11775 * 0.54954 * 25 24 5 27 27 F 1.35103 * 120.10503 * 179.70685 * 26 25 24 28 28 H 1.07996 * 120.05829 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.46996 * 25.00920 * 10 9 6 30 30 H 1.09004 * 109.47165 * 144.99843 * 10 9 6 31 31 H 0.96996 * 120.00154 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47068 * 214.99986 * 19 9 6 33 33 H 1.09001 * 109.47372 * 335.00074 * 19 9 6 34 34 H 1.09001 * 112.85054 * 45.33091 * 20 19 9 35 35 H 1.09000 * 113.61195 * 334.56762 * 21 20 19 36 36 H 1.09001 * 113.61520 * 105.46896 * 21 20 19 37 37 H 1.09005 * 113.53676 * 270.80967 * 22 21 20 38 38 H 1.08993 * 113.66514 * 139.93360 * 22 21 20 39 39 H 1.09011 * 113.61618 * 220.09268 * 23 22 21 40 40 H 1.09000 * 113.69499 * 89.19666 * 23 22 21 41 41 H 1.07995 * 119.82780 * 179.72864 * 24 5 4 42 42 H 1.07991 * 119.94328 * 180.25204 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2696 0.9425 0.7564 5 6 4.6482 0.9371 0.7523 6 16 5.5337 2.1245 1.7067 7 8 4.6549 3.2255 1.8930 8 8 6.8158 2.2463 1.1064 9 7 5.7798 1.4640 3.2052 10 6 4.7918 1.6689 4.2673 11 6 5.2019 2.8456 5.1147 12 1 6.1078 3.3869 4.8848 13 6 4.4208 3.2311 6.1835 14 7 4.7784 4.2582 6.9227 15 14 2.8538 2.2951 6.5806 16 1 3.1625 1.1905 7.5239 17 1 1.8706 3.2175 7.2032 18 1 2.2824 1.7332 5.3304 19 6 6.9856 0.6747 3.4687 20 6 8.0570 1.5725 4.0906 21 6 8.9086 2.3242 3.0539 22 6 10.1205 2.0346 3.9583 23 6 9.3387 0.8198 4.4851 24 6 5.3392 0.0053 -0.0032 25 6 4.6542 -0.9344 -0.7506 26 6 3.2714 -0.9420 -0.7569 27 9 2.6021 -1.8568 -1.4921 28 1 2.7330 1.6728 1.3438 29 1 3.8158 1.8637 3.8229 30 1 4.7360 0.7753 4.8890 31 1 4.2291 4.5292 7.6748 32 1 6.7461 -0.1357 4.1573 33 1 7.3589 0.2582 2.5332 34 1 7.6659 2.2129 4.8813 35 1 8.9576 1.8263 2.0855 36 1 8.6652 3.3837 2.9744 37 1 10.2943 2.8025 4.7122 38 1 11.0230 1.7681 3.4083 39 1 9.4419 0.6665 5.5594 40 1 9.5046 -0.0910 3.9097 41 1 6.4192 0.0097 -0.0052 42 1 5.1998 -1.6608 -1.3343 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065612047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:09 Heat of formation + Delta-G solvation = -33.225858 kcal Electronic energy + Delta-G solvation = -29355.459079 eV Core-core repulsion = 25150.456275 eV Total energy + Delta-G solvation = -4205.002804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 352.104 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.61584 -39.61082 -38.61018 -36.89702 -36.71591 -35.44716 -35.37662 -32.45111 -32.02056 -31.35095 -28.87006 -26.62681 -25.11371 -24.68823 -23.66936 -22.55384 -21.88213 -20.31839 -18.99790 -18.35578 -17.83043 -17.26828 -17.03502 -16.93054 -16.48151 -16.31374 -15.55864 -15.00743 -14.69508 -14.54751 -14.28913 -14.10811 -14.09272 -13.75919 -13.63454 -13.53014 -13.06870 -12.94137 -12.67544 -12.56472 -12.29113 -12.00402 -11.93982 -11.81223 -11.61047 -11.59191 -11.39799 -11.22488 -10.96146 -10.86825 -10.52664 -10.37536 -10.11090 -9.85290 -9.70402 -9.66122 -9.56972 -9.41228 -8.64131 -8.21642 -6.13099 -4.12601 -0.00711 0.40797 0.71100 2.29697 2.31934 3.15056 3.21844 3.28783 3.30593 3.31762 3.45133 3.51032 4.09392 4.11995 4.33281 4.38661 4.61815 4.84172 4.96013 5.04888 5.11088 5.17555 5.19367 5.23544 5.27196 5.35404 5.46752 5.55308 5.57623 5.89889 5.91497 6.07743 6.10646 6.15034 6.17329 6.28030 6.47935 6.59632 6.60463 6.77172 6.94038 7.11703 7.14499 7.26317 7.50579 8.42467 8.92176 9.45745 10.99715 Molecular weight = 352.10amu Principal moments of inertia in cm(-1) A = 0.009085 B = 0.004751 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.202052 B = 5891.839612 C = 8085.069602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.251 3.749 3 C -0.081 4.081 4 C 0.058 3.942 5 C -0.691 4.691 6 S 2.682 3.318 7 O -0.933 6.933 8 O -0.954 6.954 9 N -0.972 5.972 10 C 0.224 3.776 11 C -0.529 4.529 12 H 0.085 0.915 13 C 0.077 3.923 14 N -0.892 5.892 15 Si 0.866 3.134 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.265 1.265 19 C 0.145 3.855 20 C -0.132 4.132 21 C -0.133 4.133 22 C -0.144 4.144 23 C -0.135 4.135 24 C 0.035 3.965 25 C -0.174 4.174 26 C 0.191 3.809 27 F -0.121 7.121 28 H 0.163 0.837 29 H 0.033 0.967 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.712 -12.190 -12.714 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.064 4.064 3 C -0.086 4.086 4 C 0.037 3.963 5 C -0.773 4.773 6 S 2.768 3.232 7 O -0.923 6.923 8 O -0.944 6.944 9 N -0.811 5.811 10 C 0.101 3.899 11 C -0.568 4.568 12 H 0.103 0.897 13 C -0.127 4.127 14 N -0.530 5.530 15 Si 0.693 3.307 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.190 1.190 19 C 0.019 3.981 20 C -0.152 4.152 21 C -0.170 4.170 22 C -0.182 4.182 23 C -0.173 4.173 24 C 0.015 3.985 25 C -0.193 4.193 26 C 0.169 3.831 27 F -0.099 7.099 28 H 0.180 0.820 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.177 0.823 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.059 -11.348 -12.897 17.652 hybrid contribution -1.045 -1.259 0.118 1.641 sum 3.015 -12.608 -12.778 18.202 Atomic orbital electron populations 1.81256 1.11524 1.06844 1.07308 1.25160 0.92105 0.94642 0.94540 1.16010 0.85396 1.01425 1.05792 1.21000 0.92329 0.92599 0.90417 1.31876 1.05897 1.21084 1.18425 1.02591 0.73894 0.73964 0.72773 1.93637 1.66994 1.46732 1.84894 1.93549 1.38345 1.85272 1.77210 1.57242 1.29572 1.68736 1.25533 1.19558 0.86394 0.97944 0.86052 1.21352 1.10857 1.12970 1.11639 0.89710 1.24832 0.97222 0.94733 0.95885 1.69870 1.38758 1.26017 1.18339 0.87020 0.84233 0.80257 0.79208 1.20054 1.20902 1.18960 1.21189 0.83801 0.93328 0.99804 1.23223 0.93096 0.98635 1.00216 1.23029 0.95213 1.01187 0.97616 1.22831 0.97108 0.98491 0.99765 1.22863 0.96729 0.97056 1.00657 1.21082 1.01209 0.88211 0.87951 1.21229 0.91304 1.02733 1.04077 1.17858 0.90346 0.85781 0.89112 1.91583 1.80665 1.63733 1.73913 0.81989 0.94907 0.94944 0.92482 0.90622 0.91453 0.86111 0.89317 0.91908 0.90562 0.92291 0.91781 0.90778 0.82291 0.82610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.96 18.54 41.84 0.78 -5.19 16 2 C 0.25 3.33 14.98 -22.48 -0.34 2.99 16 3 C -0.08 -0.93 5.74 -106.82 -0.61 -1.54 16 4 C 0.06 0.71 9.22 -39.17 -0.36 0.35 16 5 C -0.69 -8.39 5.97 -39.64 -0.24 -8.62 16 6 S 2.68 43.19 5.59 -107.50 -0.60 42.59 16 7 O -0.93 -18.90 16.24 -57.17 -0.93 -19.83 16 8 O -0.95 -15.18 13.91 -57.17 -0.80 -15.97 16 9 N -0.97 -16.42 2.80 -115.67 -0.32 -16.74 16 10 C 0.22 4.60 4.19 -5.20 -0.02 4.58 16 11 C -0.53 -13.53 9.04 -34.44 -0.31 -13.84 16 12 H 0.08 2.36 6.77 -52.48 -0.36 2.00 16 13 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 14 N -0.89 -25.92 13.96 55.43 0.77 -25.15 16 15 Si 0.87 19.98 27.47 -169.99 -4.67 15.31 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 19 C 0.14 2.03 5.24 -4.04 -0.02 2.01 16 20 C -0.13 -2.05 3.83 -89.81 -0.34 -2.39 16 21 C -0.13 -2.00 6.32 -25.82 -0.16 -2.16 16 22 C -0.14 -1.88 8.09 -25.83 -0.21 -2.09 16 23 C -0.13 -1.70 7.65 -25.92 -0.20 -1.90 16 24 C 0.04 0.32 9.51 -39.51 -0.38 -0.06 16 25 C -0.17 -1.35 10.01 -39.57 -0.40 -1.74 16 26 C 0.19 1.86 7.28 -38.96 -0.28 1.58 16 27 F -0.12 -1.22 16.81 2.25 0.04 -1.18 16 28 H 0.16 2.02 7.61 -52.49 -0.40 1.62 16 29 H 0.03 0.68 6.67 -51.93 -0.35 0.33 16 30 H 0.03 0.63 7.43 -51.93 -0.39 0.24 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 33 H 0.07 0.74 7.34 -51.93 -0.38 0.36 16 34 H 0.12 2.34 5.94 -51.93 -0.31 2.03 16 35 H 0.09 1.26 7.00 -51.93 -0.36 0.89 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 41 H 0.16 1.08 7.60 -52.49 -0.40 0.68 16 42 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -31.51 370.01 -9.18 -40.69 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.06 Total: 0.77 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -3.97 Total: -20.88 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 1.23 Total: -47.08 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -1.72 Total: -35.81 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.67 Total: 15.31 kcal Atomic # 16 Polarization: 43.19 SS G_CDS: -0.60 Total: 42.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.51 -9.18 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065612047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.468 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds