Wall clock time and date at job start Tue Mar 31 2020 05:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47175 * 2 1 4 4 C 1.38144 * 125.60277 * 265.76816 * 3 2 1 5 5 C 1.47060 * 125.43102 * 0.28825 * 4 3 2 6 6 O 1.21650 * 119.99586 * 335.34823 * 5 4 3 7 7 N 1.34771 * 120.00247 * 155.35667 * 5 4 3 8 8 C 1.46506 * 120.00055 * 3.43680 * 7 5 4 9 9 C 1.50696 * 109.46984 * 85.30425 * 8 7 5 10 10 H 1.07996 * 120.00228 * 2.99921 * 9 8 7 11 11 C 1.37884 * 119.99439 * 182.99851 * 9 8 7 12 12 N 1.31515 * 119.99320 * 184.85578 * 11 9 8 13 13 Si 1.86788 * 120.00377 * 4.85554 * 11 9 8 14 14 H 1.48502 * 109.47186 * 94.86171 * 13 11 9 15 15 H 1.48500 * 109.47621 * 214.86334 * 13 11 9 16 16 H 1.48499 * 109.47296 * 334.86741 * 13 11 9 17 17 C 1.46506 * 120.00175 * 183.43954 * 7 5 4 18 18 C 1.50694 * 109.47195 * 89.99767 * 17 7 5 19 19 C 1.34513 * 125.79456 * 90.00034 * 18 17 7 20 20 C 1.41382 * 106.84667 * 180.02562 * 19 18 17 21 21 C 1.34513 * 106.83705 * 359.97438 * 20 19 18 22 22 O 1.34305 * 125.78901 * 269.69488 * 18 17 7 23 23 C 1.35866 * 109.14170 * 180.26631 * 4 3 2 24 24 C 1.41593 * 107.72426 * 359.97438 * 23 4 3 25 25 C 1.40105 * 133.37787 * 180.02562 * 24 23 4 26 26 C 1.36433 * 119.82903 * 179.97438 * 25 24 23 27 27 C 1.38935 * 120.61532 * 0.02562 * 26 25 24 28 28 C 1.37667 * 120.65171 * 359.97438 * 27 26 25 29 29 C 1.37485 * 125.60810 * 86.07395 * 3 2 1 30 30 H 1.08998 * 109.46990 * 304.97551 * 1 2 3 31 31 H 1.09007 * 109.46691 * 64.97428 * 1 2 3 32 32 H 1.08991 * 109.47055 * 184.97278 * 1 2 3 33 33 H 1.08995 * 109.47207 * 239.99384 * 2 1 3 34 34 H 1.09003 * 109.46736 * 119.99698 * 2 1 3 35 35 H 1.09005 * 109.46866 * 205.30718 * 8 7 5 36 36 H 1.09002 * 109.46689 * 325.30383 * 8 7 5 37 37 H 0.96999 * 119.99510 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46740 * 209.99573 * 17 7 5 39 39 H 1.08994 * 109.46887 * 329.99537 * 17 7 5 40 40 H 1.08005 * 126.57316 * 0.03817 * 19 18 17 41 41 H 1.07999 * 126.58252 * 179.97438 * 20 19 18 42 42 H 1.08001 * 125.79121 * 180.02562 * 21 20 19 43 43 H 1.08004 * 126.14095 * 179.97438 * 23 4 3 44 44 H 1.08001 * 120.08259 * 359.97172 * 25 24 23 45 45 H 1.08003 * 119.69183 * 180.02562 * 26 25 24 46 46 H 1.08010 * 119.67767 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.10120 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3646 2.1118 -1.1201 5 6 2.2963 1.6290 -2.5076 6 8 2.3547 0.4363 -2.7400 7 7 2.1694 2.5077 -3.5214 8 6 2.1751 3.9471 -3.2483 9 6 3.5972 4.4429 -3.1966 10 1 4.4131 3.7651 -3.3994 11 6 3.8566 5.7621 -2.8903 12 7 5.0892 6.2181 -2.9384 13 14 2.4574 6.9013 -2.4070 14 1 2.3442 6.9460 -0.9270 15 1 2.7294 8.2665 -2.9241 16 1 1.1861 6.3970 -2.9856 17 6 2.0256 2.0237 -4.8967 18 6 0.5644 1.8337 -5.2123 19 6 -0.2554 2.7642 -5.7334 20 6 -1.5282 2.1625 -5.8629 21 6 -1.4100 0.9002 -5.4136 22 8 -0.1390 0.7048 -5.0261 23 6 2.7777 3.3477 -0.7358 24 6 2.6928 3.4108 0.6762 25 6 2.9793 4.4119 1.6136 26 6 2.7912 4.1705 2.9432 27 6 2.3178 2.9390 3.3787 28 6 2.0291 1.9394 2.4772 29 6 2.2130 2.1614 1.1152 30 1 -0.3633 0.5891 0.8421 31 1 -0.3633 0.4348 -0.9313 32 1 -0.3633 -1.0237 0.0891 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6367 4.4691 -4.0395 36 1 1.6889 4.1372 -2.2914 37 1 5.2717 7.1460 -2.7225 38 1 2.4542 2.7523 -5.5849 39 1 2.5471 1.0726 -5.0035 40 1 0.0083 3.7766 -6.0017 41 1 -2.4236 2.6273 -6.2484 42 1 -2.2018 0.1666 -5.3753 43 1 3.1111 4.1399 -1.3898 44 1 3.3481 5.3722 1.2846 45 1 3.0123 4.9439 3.6639 46 1 2.1741 2.7644 4.4348 47 1 1.6612 0.9856 2.8255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065626643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:33 Heat of formation + Delta-G solvation = 66.025746 kcal Electronic energy + Delta-G solvation = -32042.913268 eV Core-core repulsion = 27966.063785 eV Total energy + Delta-G solvation = -4076.849483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33138 -41.25780 -38.96119 -36.63859 -35.65997 -33.70743 -32.95548 -32.66799 -30.99193 -30.62572 -28.83929 -28.39795 -27.89012 -25.75106 -23.56489 -23.17542 -22.39669 -21.47898 -21.07534 -20.51469 -20.09374 -18.71855 -17.38740 -16.97126 -16.63914 -16.36360 -16.27807 -15.77430 -15.23836 -14.82971 -14.60886 -14.45680 -14.21612 -14.15132 -13.72356 -13.57203 -13.23315 -13.01907 -12.79545 -12.65680 -12.62037 -12.53384 -12.50593 -12.28147 -12.02876 -11.58887 -11.51655 -11.16750 -11.02745 -10.98115 -10.89375 -10.66662 -10.40249 -10.23140 -9.81699 -9.72094 -9.42486 -9.27591 -8.83172 -8.34876 -8.08228 -7.74343 -7.17613 -6.36878 -4.37751 1.24738 1.86003 1.99322 2.63343 2.73630 3.00740 3.12347 3.20704 3.23263 3.23995 3.84183 3.89810 4.14661 4.31250 4.89703 4.92411 4.93330 4.97703 5.04588 5.20649 5.21713 5.24891 5.30803 5.37233 5.46737 5.57934 5.67612 5.76330 5.83615 5.89759 5.95378 5.96324 6.08141 6.11520 6.15656 6.17748 6.25442 6.29272 6.41188 6.60806 6.67943 6.76551 6.81395 6.97901 7.03933 7.20650 7.23373 7.36218 7.42751 7.63333 7.69183 7.88554 8.22012 8.64997 8.73389 9.17807 10.73870 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.005358 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.975568 B = 5224.182511 C = 7606.506891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.011 3.989 5 C 0.592 3.408 6 O -0.561 6.561 7 N -0.574 5.574 8 C 0.194 3.806 9 C -0.545 4.545 10 H 0.085 0.915 11 C 0.083 3.917 12 N -0.874 5.874 13 Si 0.855 3.145 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.260 1.260 17 C 0.197 3.803 18 C -0.017 4.017 19 C -0.202 4.202 20 C -0.216 4.216 21 C -0.050 4.050 22 O -0.167 6.167 23 C -0.139 4.139 24 C -0.123 4.123 25 C -0.052 4.052 26 C -0.164 4.164 27 C -0.097 4.097 28 C -0.136 4.136 29 C 0.107 3.893 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.270 0.730 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.197 0.803 43 H 0.214 0.786 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.485 -6.759 3.773 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.139 5.139 4 C -0.096 4.096 5 C 0.381 3.619 6 O -0.442 6.442 7 N -0.303 5.303 8 C 0.073 3.927 9 C -0.583 4.583 10 H 0.104 0.896 11 C -0.123 4.123 12 N -0.509 5.509 13 Si 0.680 3.320 14 H -0.189 1.189 15 H -0.205 1.205 16 H -0.184 1.184 17 C 0.074 3.926 18 C -0.069 4.069 19 C -0.222 4.222 20 C -0.236 4.236 21 C -0.118 4.118 22 O -0.062 6.062 23 C -0.163 4.163 24 C -0.128 4.128 25 C -0.071 4.071 26 C -0.183 4.183 27 C -0.117 4.117 28 C -0.157 4.157 29 C -0.003 4.003 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.130 0.870 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.214 0.786 43 H 0.230 0.770 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.314 -7.823 3.702 13.464 hybrid contribution -0.902 0.903 0.266 1.304 sum -11.216 -6.920 3.968 13.763 Atomic orbital electron populations 1.22114 0.95202 1.02225 1.02653 1.21908 0.94930 0.80539 1.04943 1.43958 1.54804 1.11607 1.03532 1.19709 1.09935 0.92817 0.87180 1.17096 0.75964 0.85132 0.83710 1.90678 1.52720 1.15815 1.85011 1.47639 1.69565 1.08458 1.04651 1.20421 0.98493 0.75575 0.98227 1.21290 0.91369 0.96211 1.49423 0.89647 1.24860 0.95532 0.97403 0.94510 1.69884 1.18950 1.16166 1.45917 0.87152 0.83225 0.81146 0.80437 1.18859 1.20464 1.18372 1.19765 0.86035 1.02588 0.84221 1.23193 0.96148 0.84583 1.02991 1.21675 0.93122 1.00889 1.06525 1.21792 0.99051 0.95250 1.07461 1.23979 0.85204 0.98869 1.03766 1.84104 1.20152 1.36326 1.65591 1.23566 1.00034 0.98371 0.94353 1.18474 1.06020 0.93886 0.94454 1.20491 0.96578 0.97917 0.92104 1.20505 1.04853 0.97551 0.95427 1.20714 0.99497 0.93134 0.98348 1.19910 1.06557 0.99937 0.89290 1.18380 1.02065 0.91576 0.88242 0.92403 0.92183 0.91192 0.87007 0.90356 0.94403 0.93573 0.91932 0.86398 0.88518 0.83338 0.83796 0.78645 0.77016 0.85967 0.86491 0.86322 0.86918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 10.24 37.16 0.38 -1.82 16 2 C 0.10 1.51 6.55 -4.04 -0.03 1.48 16 3 N -0.46 -8.53 2.82 -110.36 -0.31 -8.84 16 4 C 0.01 0.22 6.45 -82.29 -0.53 -0.31 16 5 C 0.59 12.70 7.50 -12.69 -0.10 12.60 16 6 O -0.56 -12.40 14.33 5.23 0.07 -12.33 16 7 N -0.57 -11.68 2.45 -177.84 -0.44 -12.11 16 8 C 0.19 4.16 3.72 -5.19 -0.02 4.14 16 9 C -0.55 -13.41 7.49 -34.44 -0.26 -13.67 16 10 H 0.09 2.36 8.06 -52.49 -0.42 1.94 16 11 C 0.08 2.09 5.00 -17.82 -0.09 2.00 16 12 N -0.87 -23.77 13.96 55.43 0.77 -23.00 16 13 Si 0.86 18.71 26.90 -169.99 -4.57 14.13 16 14 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 15 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.26 -5.43 6.60 56.52 0.37 -5.05 16 17 C 0.20 3.45 5.94 -5.19 -0.03 3.41 16 18 C -0.02 -0.29 6.90 -35.63 -0.25 -0.54 16 19 C -0.20 -3.08 10.81 -39.70 -0.43 -3.51 16 20 C -0.22 -2.88 10.91 -39.70 -0.43 -3.32 16 21 C -0.05 -0.66 12.09 29.42 0.36 -0.30 16 22 O -0.17 -2.79 10.65 5.70 0.06 -2.73 16 23 C -0.14 -3.05 8.24 -39.15 -0.32 -3.37 16 24 C -0.12 -2.47 6.16 -106.93 -0.66 -3.13 16 25 C -0.05 -0.93 10.06 -39.53 -0.40 -1.33 16 26 C -0.16 -2.43 9.96 -39.97 -0.40 -2.83 16 27 C -0.10 -1.34 10.01 -39.53 -0.40 -1.74 16 28 C -0.14 -2.06 10.00 -39.42 -0.39 -2.45 16 29 C 0.11 1.96 6.81 -83.98 -0.57 1.39 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.11 1.90 5.91 -51.93 -0.31 1.59 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.04 0.78 7.52 -51.93 -0.39 0.39 16 36 H 0.05 1.03 4.42 -51.93 -0.23 0.80 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.12 1.86 8.07 -51.93 -0.42 1.44 16 39 H 0.10 1.69 7.37 -51.93 -0.38 1.31 16 40 H 0.15 2.09 8.06 -52.48 -0.42 1.67 16 41 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 42 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.21 4.99 2.28 -52.48 -0.12 4.87 16 44 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 46 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 47 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -29.85 387.68 -9.22 -39.07 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.09 Total: 13.23 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -4.56 Total: -13.28 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: 0.03 Total: -43.95 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: 0.14 Total: -15.06 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.57 Total: 14.13 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.85 -9.22 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065626643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.095 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds