Wall clock time and date at job start Tue Mar 31 2020 05:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47175 * 2 1 4 4 C 1.38144 * 125.60277 * 265.76816 * 3 2 1 5 5 C 1.47060 * 125.43102 * 0.28825 * 4 3 2 6 6 O 1.21650 * 119.99586 * 335.34823 * 5 4 3 7 7 N 1.34771 * 120.00247 * 155.35667 * 5 4 3 8 8 C 1.46506 * 120.00055 * 3.43680 * 7 5 4 9 9 C 1.50696 * 109.46984 * 85.30425 * 8 7 5 10 10 H 1.07996 * 120.00228 * 2.99921 * 9 8 7 11 11 C 1.37884 * 119.99439 * 182.99851 * 9 8 7 12 12 N 1.31515 * 119.99320 * 184.85578 * 11 9 8 13 13 Si 1.86788 * 120.00377 * 4.85554 * 11 9 8 14 14 H 1.48502 * 109.47186 * 94.86171 * 13 11 9 15 15 H 1.48500 * 109.47621 * 214.86334 * 13 11 9 16 16 H 1.48499 * 109.47296 * 334.86741 * 13 11 9 17 17 C 1.46506 * 120.00175 * 183.43954 * 7 5 4 18 18 C 1.50694 * 109.47195 * 89.99767 * 17 7 5 19 19 C 1.34513 * 125.79456 * 90.00034 * 18 17 7 20 20 C 1.41382 * 106.84667 * 180.02562 * 19 18 17 21 21 C 1.34513 * 106.83705 * 359.97438 * 20 19 18 22 22 O 1.34305 * 125.78901 * 269.69488 * 18 17 7 23 23 C 1.35866 * 109.14170 * 180.26631 * 4 3 2 24 24 C 1.41593 * 107.72426 * 359.97438 * 23 4 3 25 25 C 1.40105 * 133.37787 * 180.02562 * 24 23 4 26 26 C 1.36433 * 119.82903 * 179.97438 * 25 24 23 27 27 C 1.38935 * 120.61532 * 0.02562 * 26 25 24 28 28 C 1.37667 * 120.65171 * 359.97438 * 27 26 25 29 29 C 1.37485 * 125.60810 * 86.07395 * 3 2 1 30 30 H 1.08998 * 109.46990 * 304.97551 * 1 2 3 31 31 H 1.09007 * 109.46691 * 64.97428 * 1 2 3 32 32 H 1.08991 * 109.47055 * 184.97278 * 1 2 3 33 33 H 1.08995 * 109.47207 * 239.99384 * 2 1 3 34 34 H 1.09003 * 109.46736 * 119.99698 * 2 1 3 35 35 H 1.09005 * 109.46866 * 205.30718 * 8 7 5 36 36 H 1.09002 * 109.46689 * 325.30383 * 8 7 5 37 37 H 0.96999 * 119.99510 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46740 * 209.99573 * 17 7 5 39 39 H 1.08994 * 109.46887 * 329.99537 * 17 7 5 40 40 H 1.08005 * 126.57316 * 0.03817 * 19 18 17 41 41 H 1.07999 * 126.58252 * 179.97438 * 20 19 18 42 42 H 1.08001 * 125.79121 * 180.02562 * 21 20 19 43 43 H 1.08004 * 126.14095 * 179.97438 * 23 4 3 44 44 H 1.08001 * 120.08259 * 359.97172 * 25 24 23 45 45 H 1.08003 * 119.69183 * 180.02562 * 26 25 24 46 46 H 1.08010 * 119.67767 * 180.02562 * 27 26 25 47 47 H 1.08001 * 120.10120 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3646 2.1118 -1.1201 5 6 2.2963 1.6290 -2.5076 6 8 2.3547 0.4363 -2.7400 7 7 2.1694 2.5077 -3.5214 8 6 2.1751 3.9471 -3.2483 9 6 3.5972 4.4429 -3.1966 10 1 4.4131 3.7651 -3.3994 11 6 3.8566 5.7621 -2.8903 12 7 5.0892 6.2181 -2.9384 13 14 2.4574 6.9013 -2.4070 14 1 2.3442 6.9460 -0.9270 15 1 2.7294 8.2665 -2.9241 16 1 1.1861 6.3970 -2.9856 17 6 2.0256 2.0237 -4.8967 18 6 0.5644 1.8337 -5.2123 19 6 -0.2554 2.7642 -5.7334 20 6 -1.5282 2.1625 -5.8629 21 6 -1.4100 0.9002 -5.4136 22 8 -0.1390 0.7048 -5.0261 23 6 2.7777 3.3477 -0.7358 24 6 2.6928 3.4108 0.6762 25 6 2.9793 4.4119 1.6136 26 6 2.7912 4.1705 2.9432 27 6 2.3178 2.9390 3.3787 28 6 2.0291 1.9394 2.4772 29 6 2.2130 2.1614 1.1152 30 1 -0.3633 0.5891 0.8421 31 1 -0.3633 0.4348 -0.9313 32 1 -0.3633 -1.0237 0.0891 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6367 4.4691 -4.0395 36 1 1.6889 4.1372 -2.2914 37 1 5.2717 7.1460 -2.7225 38 1 2.4542 2.7523 -5.5849 39 1 2.5471 1.0726 -5.0035 40 1 0.0083 3.7766 -6.0017 41 1 -2.4236 2.6273 -6.2484 42 1 -2.2018 0.1666 -5.3753 43 1 3.1111 4.1399 -1.3898 44 1 3.3481 5.3722 1.2846 45 1 3.0123 4.9439 3.6639 46 1 2.1741 2.7644 4.4348 47 1 1.6612 0.9856 2.8255 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065626643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:32 Heat of formation + Delta-G solvation = 50.970054 kcal Electronic energy + Delta-G solvation = -32043.566132 eV Core-core repulsion = 27966.063785 eV Total energy + Delta-G solvation = -4077.502347 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.50023 -42.67215 -40.52232 -37.92472 -37.32183 -35.08149 -34.69713 -33.89505 -32.37297 -31.88044 -30.25203 -29.89614 -29.35361 -27.08714 -25.02892 -24.61045 -23.92799 -22.64641 -22.38124 -21.79682 -21.37658 -20.22228 -19.20456 -18.30559 -18.01153 -17.84044 -17.74485 -17.02891 -16.65626 -16.28814 -16.10195 -15.87182 -15.60037 -15.49714 -15.06597 -14.94509 -14.73574 -14.46321 -14.39396 -14.06050 -13.91868 -13.72283 -13.62824 -13.59110 -13.23293 -13.13053 -12.78177 -12.63379 -12.59544 -12.33975 -12.24452 -12.13647 -12.03417 -11.77093 -11.63375 -11.04233 -10.84724 -10.83918 -10.60324 -9.80522 -9.45942 -9.09654 -8.56765 -8.35593 -6.39627 -0.13291 0.66190 0.72958 1.16916 1.35738 1.40512 1.46769 1.52602 1.74335 2.07188 2.28192 2.28925 2.43567 2.96758 3.01892 3.45682 3.72725 3.77579 3.78594 4.07201 4.07964 4.13972 4.17288 4.28276 4.31768 4.33688 4.46449 4.49876 4.54724 4.57788 4.64020 4.73144 4.80439 4.86039 4.89741 4.92033 5.00557 5.07706 5.14721 5.16119 5.26219 5.40761 5.44110 5.57599 5.61017 5.71921 5.79377 5.94887 6.06868 6.17685 6.21897 6.36763 6.42087 6.63740 7.01947 7.19858 8.79330 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.008121 B = 0.005358 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.975568 B = 5224.182511 C = 7606.506891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.457 5.457 4 C -0.010 4.010 5 C 0.584 3.416 6 O -0.576 6.576 7 N -0.576 5.576 8 C 0.207 3.793 9 C -0.535 4.535 10 H 0.040 0.960 11 C 0.040 3.960 12 N -0.922 5.922 13 Si 0.912 3.088 14 H -0.259 1.259 15 H -0.276 1.276 16 H -0.241 1.241 17 C 0.195 3.805 18 C -0.048 4.048 19 C -0.200 4.200 20 C -0.222 4.222 21 C -0.043 4.043 22 O -0.192 6.192 23 C -0.166 4.166 24 C -0.157 4.157 25 C -0.082 4.082 26 C -0.151 4.151 27 C -0.083 4.083 28 C -0.136 4.136 29 C 0.098 3.902 30 H 0.065 0.935 31 H 0.032 0.968 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.045 0.955 37 H 0.273 0.727 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.157 0.843 41 H 0.175 0.825 42 H 0.238 0.762 43 H 0.192 0.808 44 H 0.113 0.887 45 H 0.149 0.851 46 H 0.165 0.835 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 -7.335 6.329 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 N -0.139 5.139 4 C -0.118 4.118 5 C 0.374 3.626 6 O -0.459 6.459 7 N -0.305 5.305 8 C 0.086 3.914 9 C -0.573 4.573 10 H 0.058 0.942 11 C -0.162 4.162 12 N -0.560 5.560 13 Si 0.734 3.266 14 H -0.184 1.184 15 H -0.201 1.201 16 H -0.164 1.164 17 C 0.073 3.927 18 C -0.099 4.099 19 C -0.220 4.220 20 C -0.241 4.241 21 C -0.110 4.110 22 O -0.088 6.088 23 C -0.191 4.191 24 C -0.162 4.162 25 C -0.100 4.100 26 C -0.170 4.170 27 C -0.102 4.102 28 C -0.156 4.156 29 C -0.011 4.011 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.106 0.894 40 H 0.175 0.825 41 H 0.192 0.808 42 H 0.254 0.746 43 H 0.208 0.792 44 H 0.131 0.869 45 H 0.167 0.833 46 H 0.183 0.817 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.554 -8.418 6.241 17.132 hybrid contribution 0.122 0.989 -0.444 1.091 sum -13.432 -7.429 5.797 16.408 Atomic orbital electron populations 1.22038 0.93467 1.04069 1.01459 1.22120 0.96321 0.78998 1.05306 1.44143 1.54414 1.12454 1.02889 1.19696 1.11031 0.93326 0.87709 1.17327 0.75830 0.85135 0.84302 1.90645 1.53683 1.16228 1.85385 1.47700 1.69243 1.07848 1.05705 1.20168 0.96358 0.76420 0.98463 1.21238 0.91805 0.95591 1.48652 0.94174 1.25529 0.97634 0.98796 0.94217 1.70008 1.21261 1.16760 1.47978 0.86246 0.80971 0.79033 0.80381 1.18395 1.20119 1.16406 1.19818 0.87565 1.02327 0.82965 1.22909 0.95826 0.85561 1.05566 1.21956 0.93898 1.00939 1.05231 1.22158 0.99203 0.95266 1.07470 1.24881 0.84473 0.99944 1.01720 1.84078 1.21744 1.36609 1.66368 1.23318 1.01655 0.98374 0.95726 1.18676 1.07816 0.95823 0.93850 1.20622 0.98491 0.97475 0.93453 1.20935 1.02613 0.98961 0.94458 1.21272 0.96782 0.91757 1.00394 1.20370 1.05803 1.01811 0.87635 1.18769 1.02139 0.90802 0.89433 0.91639 0.94874 0.88070 0.89231 0.87308 0.93066 0.93712 0.91800 0.85435 0.89393 0.82536 0.80782 0.74618 0.79198 0.86922 0.83290 0.81721 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 10.24 71.98 0.74 -3.09 16 2 C 0.09 2.77 6.55 86.38 0.57 3.33 16 3 N -0.46 -17.14 2.82 -503.07 -1.42 -18.56 16 4 C -0.01 -0.42 6.45 39.91 0.26 -0.17 16 5 C 0.58 26.53 7.50 86.56 0.65 27.18 16 6 O -0.58 -26.92 14.33 -4.19 -0.06 -26.98 16 7 N -0.58 -24.78 2.45 -834.79 -2.05 -26.82 16 8 C 0.21 9.28 3.72 85.63 0.32 9.60 16 9 C -0.53 -28.00 7.49 25.60 0.19 -27.81 16 10 H 0.04 2.42 8.06 -2.91 -0.02 2.39 16 11 C 0.04 2.11 5.00 84.66 0.42 2.53 16 12 N -0.92 -52.84 13.96 21.45 0.30 -52.54 16 13 Si 0.91 39.39 26.90 68.60 1.85 41.24 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.24 -9.59 6.60 99.48 0.66 -8.93 16 17 C 0.20 7.22 5.94 85.63 0.51 7.73 16 18 C -0.05 -1.62 6.90 24.83 0.17 -1.45 16 19 C -0.20 -5.94 10.81 22.19 0.24 -5.70 16 20 C -0.22 -5.41 10.91 22.19 0.24 -5.17 16 21 C -0.04 -1.04 12.09 66.97 0.81 -0.23 16 22 O -0.19 -6.41 10.65 -2.52 -0.03 -6.43 16 23 C -0.17 -7.64 8.24 22.55 0.19 -7.46 16 24 C -0.16 -6.41 6.16 -21.36 -0.13 -6.54 16 25 C -0.08 -2.88 10.06 22.30 0.22 -2.66 16 26 C -0.15 -4.00 9.96 22.02 0.22 -3.78 16 27 C -0.08 -1.89 10.01 22.30 0.22 -1.66 16 28 C -0.14 -3.59 10.00 22.37 0.22 -3.37 16 29 C 0.10 3.50 6.81 39.13 0.27 3.77 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 3.10 5.91 -2.39 -0.01 3.08 16 34 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.05 2.14 7.52 -2.38 -0.02 2.13 16 36 H 0.05 2.07 4.42 -2.39 -0.01 2.05 16 37 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 38 H 0.13 4.29 8.07 -2.39 -0.02 4.27 16 39 H 0.09 3.33 7.37 -2.39 -0.02 3.31 16 40 H 0.16 4.26 8.06 -2.91 -0.02 4.24 16 41 H 0.17 3.09 8.06 -2.91 -0.02 3.06 16 42 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16 43 H 0.19 9.55 2.28 -2.91 -0.01 9.54 16 44 H 0.11 4.03 8.06 -2.91 -0.02 4.01 16 45 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 46 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 47 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -70.84 387.68 5.87 -64.98 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: 0.95 Total: 40.06 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 6.33 Total: -14.94 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.17 Total: -97.92 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.09 Total: -33.42 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 1.85 Total: 41.24 kcal Total: -70.84 5.87 -64.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065626643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.948 kcal (2) G-P(sol) polarization free energy of solvation -70.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds