Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46727 * 2 1 4 4 C 1.50699 * 109.46555 * 119.99877 * 2 1 3 5 5 H 1.08001 * 119.99333 * 120.00766 * 4 2 1 6 6 C 1.37877 * 120.00257 * 299.99681 * 4 2 1 7 7 N 1.31510 * 119.99956 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99904 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47269 * 90.00568 * 8 6 4 10 10 H 1.48504 * 109.47180 * 210.00530 * 8 6 4 11 11 H 1.48505 * 109.47536 * 330.00485 * 8 6 4 12 12 S 1.81401 * 109.47177 * 240.00122 * 2 1 3 13 13 C 1.76203 * 102.99819 * 70.63390 * 12 2 1 14 14 C 1.38729 * 120.10490 * 5.96625 * 13 12 2 15 15 C 1.38242 * 119.98987 * 180.27473 * 14 13 12 16 16 C 1.38268 * 120.20107 * 359.72488 * 15 14 13 17 17 C 1.38282 * 120.20498 * 359.97438 * 16 15 14 18 18 C 1.38646 * 120.00345 * 0.02562 * 17 16 15 19 19 N 1.40004 * 120.09929 * 179.97438 * 18 17 16 20 20 S 1.65600 * 120.00164 * 32.62858 * 19 18 17 21 21 O 1.42097 * 106.40321 * 306.64873 * 20 19 18 22 22 O 1.42099 * 106.40111 * 173.72864 * 20 19 18 23 23 C 1.76198 * 107.21572 * 60.18722 * 20 19 18 24 24 C 1.39874 * 126.04269 * 269.99895 * 23 20 19 25 25 N 1.30836 * 108.20043 * 179.74087 * 24 23 20 26 26 N 1.40078 * 108.21145 * 0.40729 * 25 24 23 27 27 H 0.96998 * 126.04382 * 179.85721 * 26 25 24 28 28 C 1.34955 * 107.92238 * 359.58848 * 26 25 24 29 29 H 1.09003 * 109.46862 * 66.10044 * 1 2 3 30 30 H 1.09000 * 109.47478 * 186.09159 * 1 2 3 31 31 H 1.09002 * 109.47470 * 306.09962 * 1 2 3 32 32 H 0.96997 * 120.00121 * 179.97438 * 7 6 4 33 33 H 1.08003 * 119.99945 * 0.02562 * 14 13 12 34 34 H 1.08007 * 119.89862 * 179.74037 * 15 14 13 35 35 H 1.08000 * 119.89592 * 180.02562 * 16 15 14 36 36 H 1.07996 * 120.00169 * 180.02562 * 17 16 15 37 37 H 0.97006 * 120.00049 * 212.62882 * 19 18 17 38 38 H 1.07998 * 125.89139 * 0.02562 * 24 23 20 39 39 H 1.08001 * 126.12632 * 180.26294 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3222 -1.1195 4.0079 9 1 3.6303 -0.5440 4.4120 10 1 1.3441 -0.9490 5.1122 11 1 2.4878 -2.5654 3.7122 12 16 2.1347 -0.8551 -1.4811 13 6 1.7301 0.2659 -2.7789 14 6 1.2096 1.5169 -2.4808 15 6 0.8876 2.3924 -3.5011 16 6 1.0880 2.0277 -4.8197 17 6 1.6121 0.7852 -5.1259 18 6 1.9380 -0.0995 -4.1094 19 7 2.4683 -1.3581 -4.4172 20 16 3.4334 -1.5467 -5.7496 21 8 2.7034 -1.0243 -6.8511 22 8 3.9240 -2.8796 -5.7042 23 6 4.8305 -0.4947 -5.5346 24 6 4.9307 0.8361 -5.9532 25 7 6.1118 1.2839 -5.6124 26 7 6.8052 0.2478 -4.9736 27 1 7.7060 0.2985 -4.6176 28 6 5.9961 -0.8316 -4.9355 29 1 -0.3633 0.4164 -0.9396 30 1 -0.3634 -1.0218 0.1091 31 1 -0.3634 0.6055 0.8303 32 1 0.7081 1.1609 3.4843 33 1 1.0522 1.8051 -1.4519 34 1 0.4786 3.3643 -3.2675 35 1 0.8351 2.7157 -5.6129 36 1 1.7676 0.5039 -6.1570 37 1 2.2703 -2.1198 -3.8500 38 1 4.1636 1.3984 -6.4649 39 1 6.2358 -1.7921 -4.5038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066813938.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = 26.637191 kcal Electronic energy + Delta-G solvation = -26538.806105 eV Core-core repulsion = 22701.353328 eV Total energy + Delta-G solvation = -3837.452776 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 353.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48592 -39.15581 -37.26229 -35.95344 -35.00544 -34.12800 -32.00186 -31.17462 -30.66640 -30.02112 -28.80717 -25.42170 -23.02317 -22.60137 -22.43943 -21.99087 -21.28148 -19.56225 -18.87599 -18.09050 -17.43438 -16.73182 -16.21404 -16.03656 -15.42461 -15.26438 -15.01729 -14.82580 -14.51912 -14.41137 -13.78739 -13.51842 -13.35270 -13.15473 -12.71813 -12.46783 -12.27618 -12.09460 -12.01165 -11.90301 -11.79153 -11.26642 -11.10335 -11.05305 -10.91543 -10.73707 -10.61446 -10.45501 -10.14469 -10.05705 -9.68246 -9.48916 -9.24445 -8.99657 -8.58377 -8.22025 -6.64540 -6.28687 -4.37492 0.29930 1.30273 1.56642 1.61847 2.04894 2.39733 2.47512 3.01859 3.17035 3.24133 3.28046 3.54599 3.67049 3.94816 4.11324 4.23944 4.44241 4.65592 5.03133 5.04211 5.07480 5.23493 5.24905 5.31002 5.65742 5.81361 5.99867 6.05344 6.25022 6.45635 6.51641 6.65414 6.67640 6.71155 6.74834 6.79729 6.91846 7.10264 7.23264 7.27495 7.53730 7.69568 7.92749 8.61294 9.27061 10.77813 Molecular weight = 353.07amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.003481 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.983863 B = 8041.345729 C = 8682.849960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.096 3.904 3 H 0.051 0.949 4 C -0.512 4.512 5 H 0.067 0.933 6 C 0.072 3.928 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 S -0.165 6.165 13 C -0.084 4.084 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.111 4.111 17 C -0.165 4.165 18 C 0.161 3.839 19 N -1.046 6.046 20 S 2.728 3.272 21 O -0.953 6.953 22 O -0.960 6.960 23 C -0.814 4.814 24 C 0.143 3.857 25 N -0.290 5.290 26 N -0.461 5.461 27 H 0.445 0.555 28 C 0.193 3.807 29 H 0.020 0.980 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.266 0.734 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.159 0.841 37 H 0.429 0.571 38 H 0.198 0.802 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.141 0.369 -14.925 16.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.069 0.931 4 C -0.552 4.552 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.523 5.523 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.196 1.196 12 S 0.083 5.917 13 C -0.201 4.201 14 C -0.136 4.136 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.187 4.187 18 C 0.058 3.942 19 N -0.796 5.796 20 S 2.817 3.183 21 O -0.942 6.942 22 O -0.951 6.951 23 C -0.914 4.914 24 C -0.047 4.047 25 N -0.109 5.109 26 N -0.164 5.164 27 H 0.290 0.710 28 C 0.037 3.963 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.176 0.824 37 H 0.267 0.733 38 H 0.215 0.785 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.381 -0.106 -15.564 17.225 hybrid contribution -0.100 0.361 1.970 2.005 sum 7.280 0.255 -13.594 15.423 Atomic orbital electron populations 1.22098 0.96154 1.01560 1.00120 1.21123 0.95723 0.97342 0.88907 0.93084 1.20608 1.32730 1.13271 0.88586 0.91511 1.24880 0.94589 0.94931 0.98862 1.69866 1.35694 1.22498 1.24199 0.86357 0.78617 0.80054 0.81665 1.20410 1.20909 1.19585 1.85136 1.75152 1.30052 1.01315 1.21900 1.03963 0.98488 0.95760 1.21377 0.99167 0.92381 1.00686 1.21079 1.00664 0.99467 0.92668 1.20878 1.00164 0.95945 0.96350 1.21729 1.02240 0.95168 0.99589 1.16836 1.00444 0.84903 0.91980 1.53293 1.62699 1.15185 1.48441 1.00897 0.72550 0.72498 0.72326 1.93500 1.70376 1.80445 1.49922 1.93581 1.80896 1.34400 1.86185 1.31484 1.19775 1.13303 1.26828 1.23571 0.94924 0.91327 0.94903 1.77413 1.07382 1.10361 1.15787 1.46853 1.16010 1.08464 1.45098 0.71044 1.22571 0.88745 0.93364 0.91585 0.96134 0.93916 0.89095 0.92390 0.84473 0.86065 0.85745 0.82362 0.73282 0.78531 0.78610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.40 37.16 0.31 -2.83 16 2 C 0.10 2.25 1.97 -27.88 -0.06 2.20 16 3 H 0.05 1.27 6.80 -51.92 -0.35 0.92 16 4 C -0.51 -13.20 8.58 -34.44 -0.30 -13.50 16 5 H 0.07 1.73 7.71 -52.49 -0.40 1.33 16 6 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -23.39 11.39 55.43 0.63 -22.76 16 8 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 12 S -0.16 -3.29 20.06 -107.50 -2.16 -5.44 16 13 C -0.08 -1.48 5.99 -38.92 -0.23 -1.72 16 14 C -0.11 -1.91 8.07 -39.40 -0.32 -2.23 16 15 C -0.12 -1.67 10.04 -39.57 -0.40 -2.07 16 16 C -0.11 -1.43 10.04 -39.55 -0.40 -1.82 16 17 C -0.16 -2.27 9.26 -39.41 -0.36 -2.63 16 18 C 0.16 2.47 6.29 -83.49 -0.52 1.95 16 19 N -1.05 -14.32 5.52 32.55 0.18 -14.14 16 20 S 2.73 34.41 5.62 -107.50 -0.60 33.81 16 21 O -0.95 -13.25 14.83 -57.17 -0.85 -14.09 16 22 O -0.96 -13.68 17.85 -57.17 -1.02 -14.70 16 23 C -0.81 -9.43 6.00 -40.01 -0.24 -9.67 16 24 C 0.14 1.68 11.82 -17.36 -0.21 1.47 16 25 N -0.29 -3.49 12.70 30.62 0.39 -3.10 16 26 N -0.46 -4.26 7.36 30.45 0.22 -4.04 16 27 H 0.44 2.48 8.96 -182.62 -1.64 0.84 16 28 C 0.19 1.85 11.73 -17.22 -0.20 1.65 16 29 H 0.02 0.41 6.21 -51.93 -0.32 0.09 16 30 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.09 2.22 6.26 -51.93 -0.32 1.89 16 32 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.14 2.56 5.01 -52.48 -0.26 2.30 16 34 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.16 2.03 5.09 -52.49 -0.27 1.76 16 37 H 0.43 5.69 8.01 -34.47 -0.28 5.42 16 38 H 0.20 1.90 8.06 -52.49 -0.42 1.48 16 39 H 0.20 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 352.39 15.07 5.31 5.31 Total: -1.00 -32.09 352.39 -11.03 -43.12 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.10 Total: 8.39 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.01 Total: -27.44 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 1.42 Total: -44.04 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.87 Total: -28.79 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Atomic # 16 Polarization: 31.13 SS G_CDS: -2.76 Total: 28.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.09 -11.03 -43.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066813938.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.754 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds