Wall clock time and date at job start Tue Mar 31 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86797 * 120.00440 * 2 1 4 4 H 1.48501 * 109.47084 * 270.00011 * 3 2 1 5 5 H 1.48502 * 109.47081 * 29.99658 * 3 2 1 6 6 H 1.48496 * 109.47486 * 149.99723 * 3 2 1 7 7 C 1.39939 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00536 * 197.88552 * 7 2 1 9 9 C 1.41443 * 119.99956 * 17.87900 * 7 2 1 10 10 C 1.40785 * 120.17664 * 204.44388 * 9 7 2 11 11 C 1.37713 * 120.03821 * 180.02562 * 10 9 7 12 12 C 1.38378 * 120.41085 * 359.69502 * 11 10 9 13 13 C 1.39876 * 120.35577 * 0.55998 * 12 11 10 14 14 C 1.47884 * 120.02388 * 179.73869 * 13 12 11 15 15 O 1.21550 * 120.00077 * 179.72399 * 14 13 12 16 16 N 1.34782 * 120.00010 * 359.72980 * 14 13 12 17 17 C 1.46500 * 119.99913 * 179.97438 * 16 14 13 18 18 C 1.50707 * 109.46947 * 180.02562 * 17 16 14 19 19 C 1.38830 * 120.75314 * 269.97958 * 18 17 16 20 20 C 1.38049 * 119.28428 * 180.02562 * 19 18 17 21 21 N 1.31966 * 120.83727 * 359.74587 * 20 19 18 22 22 C 1.32244 * 121.64194 * 0.52228 * 21 20 19 23 23 O 1.35684 * 119.68119 * 179.75395 * 22 21 20 24 24 C 1.42896 * 117.00019 * 359.72578 * 23 22 21 25 25 C 1.52994 * 109.47207 * 179.97438 * 24 23 22 26 26 C 1.52998 * 117.51985 * 116.28515 * 25 24 23 27 27 C 1.53000 * 60.00356 * 107.48288 * 26 25 24 28 28 C 1.38371 * 120.75642 * 90.00333 * 18 17 16 29 29 C 1.39033 * 119.95364 * 359.47154 * 13 12 11 30 30 H 0.96999 * 119.99811 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.98392 * 0.02562 * 10 9 7 32 32 H 1.07996 * 119.79565 * 179.97438 * 11 10 9 33 33 H 1.07998 * 119.81630 * 180.28352 * 12 11 10 34 34 H 0.97003 * 119.99865 * 359.97438 * 16 14 13 35 35 H 1.08995 * 109.47043 * 60.00392 * 17 16 14 36 36 H 1.08999 * 109.47271 * 300.00212 * 17 16 14 37 37 H 1.07996 * 120.36136 * 0.02562 * 19 18 17 38 38 H 1.08005 * 119.58214 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.46961 * 59.99829 * 24 23 22 40 40 H 1.09003 * 109.47100 * 300.00157 * 24 23 22 41 41 H 1.08997 * 115.55061 * 330.58454 * 25 24 23 42 42 H 1.08999 * 117.50125 * 214.96999 * 26 25 24 43 43 H 1.09002 * 117.49470 * 359.97438 * 26 25 24 44 44 H 1.09000 * 117.49962 * 252.51833 * 27 26 25 45 45 H 1.08993 * 117.50015 * 107.48776 * 27 26 25 46 46 H 1.07999 * 120.44648 * 359.97438 * 28 18 17 47 47 H 1.07993 * 120.20635 * 180.22772 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4899 2.0463 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5399 1.4401 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0488 -1.2345 0.2878 9 6 1.3519 -2.4074 -0.3750 10 6 1.8261 -3.6500 0.0868 11 6 1.1855 -4.8122 -0.2810 12 6 0.0706 -4.7686 -1.0995 13 6 -0.4118 -3.5438 -1.5723 14 6 -1.6005 -3.5062 -2.4513 15 8 -2.0223 -2.4412 -2.8579 16 7 -2.2162 -4.6528 -2.8015 17 6 -3.3941 -4.6155 -3.6718 18 6 -3.8883 -6.0194 -3.9087 19 6 -3.4160 -6.7672 -4.9789 20 6 -3.8899 -8.0500 -5.1677 21 7 -4.7784 -8.5711 -4.3428 22 6 -5.2555 -7.8885 -3.3156 23 8 -6.1719 -8.4617 -2.4953 24 6 -6.5758 -9.7967 -2.8063 25 6 -7.6050 -10.2707 -1.7783 26 6 -9.0148 -10.5853 -2.2828 27 6 -8.0784 -11.7228 -1.8703 28 6 -4.8233 -6.5923 -3.0648 29 6 0.2237 -2.3612 -1.2108 30 1 -0.4850 0.8401 -0.0004 31 1 2.6928 -3.6918 0.7299 32 1 1.5528 -5.7633 0.0751 33 1 -0.4271 -5.6857 -1.3783 34 1 -1.8794 -5.5028 -2.4773 35 1 -3.1275 -4.1582 -4.6246 36 1 -4.1799 -4.0298 -3.1949 37 1 -2.6858 -6.3499 -5.6564 38 1 -3.5254 -8.6361 -5.9984 39 1 -5.7071 -10.4545 -2.7801 40 1 -7.0189 -9.8196 -3.8019 41 1 -7.5121 -9.8336 -0.7842 42 1 -9.8493 -10.3552 -1.6204 43 1 -9.2093 -10.4541 -3.3472 44 1 -7.6567 -12.3402 -2.6634 45 1 -8.2968 -12.2409 -0.9366 46 1 -5.2120 -6.0391 -2.2226 47 1 -0.1474 -1.4130 -1.5705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067338302.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:48 Heat of formation + Delta-G solvation = 1.924190 kcal Electronic energy + Delta-G solvation = -28671.676322 eV Core-core repulsion = 24592.047187 eV Total energy + Delta-G solvation = -4079.629135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.94261 -39.31097 -38.66014 -37.18953 -36.96939 -35.02669 -33.76534 -32.39478 -30.94054 -30.17731 -29.45515 -27.93225 -26.72643 -25.25366 -23.70209 -22.86685 -22.69260 -21.78548 -21.02217 -20.91148 -19.64569 -18.42515 -17.69643 -17.27409 -16.45676 -16.34025 -16.02324 -15.81053 -15.58433 -15.08860 -14.87266 -14.72481 -14.56076 -14.24983 -13.83511 -13.64042 -13.57267 -13.23107 -12.74660 -12.62517 -12.59275 -12.48631 -12.07106 -12.02697 -11.78236 -11.65342 -11.58175 -11.18548 -11.10330 -10.94560 -10.75092 -10.51308 -10.39546 -10.18363 -9.99634 -9.90372 -9.71102 -9.23471 -9.04554 -8.79336 -8.72724 -7.65865 -7.54116 -6.81769 -4.43112 0.85657 0.96607 2.17356 2.61519 2.79850 3.07041 3.10246 3.14499 3.34121 3.40425 3.82302 3.85262 3.90922 4.01750 4.26901 4.39753 4.43226 4.51845 4.61725 4.79085 4.83565 4.87765 4.96552 5.13174 5.19515 5.23190 5.34530 5.43152 5.50006 5.55556 5.59790 5.65056 5.65279 5.73599 5.84055 6.06870 6.10973 6.19350 6.25493 6.69652 6.72190 6.96551 6.99332 7.01070 7.19355 7.35858 7.57893 7.67337 7.72677 7.89810 8.03579 8.16266 8.48541 8.78202 8.81217 8.87947 10.12983 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.001742 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.160627 B =16068.144323 C =16325.251507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.211 4.211 11 C -0.097 4.097 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.566 3.434 15 O -0.544 6.544 16 N -0.733 5.733 17 C 0.161 3.839 18 C -0.022 4.022 19 C -0.192 4.192 20 C 0.137 3.863 21 N -0.540 5.540 22 C 0.321 3.679 23 O -0.303 6.303 24 C 0.105 3.895 25 C -0.161 4.161 26 C -0.176 4.176 27 C -0.168 4.168 28 C -0.171 4.171 29 C -0.092 4.092 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.401 0.599 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.141 0.859 38 H 0.161 0.839 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.145 0.855 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.854 -17.829 -7.508 23.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.095 3.905 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.357 3.643 15 O -0.422 6.422 16 N -0.388 5.388 17 C 0.037 3.963 18 C -0.030 4.030 19 C -0.213 4.213 20 C -0.018 4.018 21 N -0.264 5.264 22 C 0.143 3.857 23 O -0.210 6.210 24 C 0.029 3.971 25 C -0.179 4.179 26 C -0.213 4.213 27 C -0.205 4.205 28 C -0.192 4.192 29 C -0.112 4.112 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.237 0.763 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.159 0.841 38 H 0.178 0.822 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.162 0.838 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.830 -17.628 -7.676 23.684 hybrid contribution 0.720 0.854 0.231 1.140 sum -13.110 -16.775 -7.444 22.554 Atomic orbital electron populations 1.69791 1.07580 1.29806 1.33518 1.25971 0.94778 1.01574 0.92298 0.86261 0.80367 0.80391 0.79452 1.19131 1.20219 1.18569 1.19605 0.98262 0.91035 1.39940 0.90031 1.17609 0.91200 0.92476 0.89169 1.21106 1.03512 0.92739 1.05711 1.20437 0.95984 0.96755 0.98402 1.20333 1.01263 0.94587 1.07600 1.19429 0.96489 0.95356 1.01831 1.18870 0.83248 0.82606 0.79566 1.90706 1.66224 1.29791 1.55434 1.45945 1.30435 1.10108 1.52316 1.20111 0.89076 0.90954 0.96144 1.20188 0.93577 0.95908 0.93285 1.21990 1.03315 0.95991 1.00006 1.22392 0.90843 0.92757 0.95806 1.67323 1.15083 1.38132 1.05908 1.19726 0.88449 0.89544 0.88007 1.86223 1.54522 1.30821 1.49433 1.22100 0.96934 0.80714 0.97321 1.22179 0.95554 0.99244 1.00918 1.23105 0.93326 1.02855 1.02055 1.22984 1.03330 0.90535 1.03701 1.21034 1.01215 0.93963 1.03000 1.21638 0.96457 0.96415 0.96675 0.90407 0.88587 0.88897 0.89322 0.76342 0.90134 0.90262 0.84103 0.82163 0.91111 0.91472 0.86560 0.88396 0.88543 0.88435 0.88139 0.83760 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.61 10.96 55.55 0.61 -20.00 16 2 C 0.07 1.83 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.46 -11.99 9.05 -37.73 -0.34 -12.33 16 8 H 0.08 2.02 7.91 -52.48 -0.42 1.61 16 9 C 0.10 2.57 5.57 -106.87 -0.60 1.98 16 10 C -0.21 -4.97 9.78 -38.81 -0.38 -5.35 16 11 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 12 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 14 C 0.57 12.10 7.77 -12.31 -0.10 12.00 16 15 O -0.54 -13.31 16.33 5.32 0.09 -13.22 16 16 N -0.73 -11.79 5.50 -62.41 -0.34 -12.13 16 17 C 0.16 2.14 5.85 -5.19 -0.03 2.11 16 18 C -0.02 -0.24 5.28 -104.35 -0.55 -0.79 16 19 C -0.19 -1.86 9.81 -39.43 -0.39 -2.25 16 20 C 0.14 1.29 11.18 -17.56 -0.20 1.09 16 21 N -0.54 -6.09 9.22 -13.33 -0.12 -6.22 16 22 C 0.32 3.85 7.49 -17.12 -0.13 3.72 16 23 O -0.30 -3.53 10.12 -18.76 -0.19 -3.72 16 24 C 0.10 0.96 5.59 37.15 0.21 1.17 16 25 C -0.16 -1.23 6.06 -90.62 -0.55 -1.78 16 26 C -0.18 -1.12 10.18 -26.73 -0.27 -1.39 16 27 C -0.17 -0.99 10.25 -26.73 -0.27 -1.26 16 28 C -0.17 -1.99 9.75 -39.28 -0.38 -2.37 16 29 C -0.09 -2.42 8.24 -38.44 -0.32 -2.74 16 30 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 31 H 0.10 2.11 8.06 -52.49 -0.42 1.68 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 34 H 0.40 5.82 6.48 -40.82 -0.26 5.55 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.16 1.01 8.06 -52.48 -0.42 0.58 16 39 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.07 0.60 7.84 -51.93 -0.41 0.20 16 41 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.14 1.61 8.06 -52.49 -0.42 1.18 16 47 H 0.13 3.83 5.74 -52.49 -0.30 3.53 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -30.49 403.28 -11.02 -41.51 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.34 Total: 11.52 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -5.77 Total: -17.45 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.14 Total: -38.35 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.10 Total: -16.94 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.49 -11.02 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067338302.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.435 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds