Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47318 * 270.00132 * 3 2 1 5 5 H 1.48504 * 109.46857 * 29.99777 * 3 2 1 6 6 H 1.48503 * 109.47224 * 149.99749 * 3 2 1 7 7 C 1.37875 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00573 * 179.97438 * 7 2 1 10 10 N 1.46502 * 109.47578 * 179.97438 * 9 7 2 11 11 C 1.34768 * 120.00370 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99836 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00491 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.47510 * 172.20215 * 13 11 10 15 15 C 1.46897 * 110.99818 * 157.90477 * 14 13 11 16 16 C 1.50700 * 109.47120 * 190.00196 * 15 14 13 17 17 C 1.38421 * 120.02671 * 269.72556 * 16 15 14 18 18 F 1.35097 * 120.01170 * 0.02562 * 17 16 15 19 19 C 1.38480 * 119.97470 * 179.79295 * 17 16 15 20 20 C 1.38207 * 120.02501 * 0.47953 * 19 17 16 21 21 C 1.38212 * 120.05091 * 359.75203 * 20 19 17 22 22 C 1.38425 * 120.02720 * 90.00172 * 16 15 14 23 23 F 1.35102 * 120.00817 * 0.02562 * 22 16 15 24 24 C 1.46895 * 111.00174 * 281.86250 * 14 13 11 25 25 C 1.54892 * 110.48694 * 346.80319 * 24 14 13 26 26 C 1.55237 * 102.58549 * 156.67779 * 25 24 14 27 27 C 1.54268 * 104.23436 * 322.08406 * 26 25 24 28 28 C 1.53878 * 106.59550 * 23.61249 * 27 26 25 29 29 H 0.96998 * 119.99992 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.46791 * 60.00072 * 9 7 2 31 31 H 1.09000 * 109.47299 * 300.00672 * 9 7 2 32 32 H 0.97004 * 119.99607 * 0.02562 * 10 9 7 33 33 H 1.09005 * 109.46990 * 52.20436 * 13 11 10 34 34 H 1.09000 * 109.47229 * 292.21114 * 13 11 10 35 35 H 1.09006 * 109.47503 * 310.00313 * 15 14 13 36 36 H 1.09003 * 109.47457 * 70.00277 * 15 14 13 37 37 H 1.07994 * 119.98462 * 180.23292 * 19 17 16 38 38 H 1.07999 * 119.97886 * 179.76868 * 20 19 17 39 39 H 1.07996 * 119.98700 * 179.97438 * 21 20 19 40 40 H 1.09006 * 110.43489 * 224.26291 * 24 14 13 41 41 H 1.08994 * 110.75718 * 275.06900 * 25 24 14 42 42 H 1.09002 * 110.75387 * 38.44061 * 25 24 14 43 43 H 1.09002 * 110.46649 * 203.39433 * 26 25 24 44 44 H 1.09003 * 110.58109 * 80.83113 * 26 25 24 45 45 H 1.09005 * 110.03247 * 264.33224 * 27 26 25 46 46 H 1.08995 * 110.07304 * 142.91527 * 27 26 25 47 47 H 1.09003 * 110.03392 * 240.71428 * 28 27 26 48 48 H 1.09003 * 110.03000 * 119.28573 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5753 -0.0010 11 6 5.3249 -2.8215 -0.0009 12 8 6.1131 -1.8997 -0.0005 13 6 5.8273 -4.2423 -0.0002 14 7 7.2842 -4.2467 -0.1882 15 6 7.8760 -5.4940 0.3136 16 6 9.3774 -5.3658 0.3323 17 6 10.1182 -5.7385 -0.7760 18 9 9.4955 -6.2170 -1.8753 19 6 11.4975 -5.6162 -0.7593 20 6 12.1352 -5.1316 0.3670 21 6 11.3969 -4.7636 1.4760 22 6 10.0173 -4.8806 1.4598 23 9 9.2959 -4.5221 2.5444 24 6 7.6338 -4.0280 -1.5981 25 6 6.3834 -4.1891 -2.4979 26 6 6.7642 -3.3645 -3.7569 27 6 7.5277 -2.1469 -3.1962 28 6 8.0806 -2.5688 -1.8236 29 1 -0.4850 0.8400 0.0004 30 1 3.8752 -0.6804 0.8889 31 1 3.8746 -0.6799 -0.8911 32 1 3.3696 -3.3126 -0.0010 33 1 5.3546 -4.7952 -0.8120 34 1 5.5823 -4.7139 0.9514 35 1 7.5152 -5.6866 1.3241 36 1 7.5900 -6.3198 -0.3378 37 1 12.0754 -5.9034 -1.6252 38 1 13.2112 -5.0400 0.3806 39 1 11.8963 -4.3854 2.3557 40 1 8.4180 -4.7192 -1.9074 41 1 6.2234 -5.2366 -2.7530 42 1 5.5020 -3.7694 -2.0131 43 1 5.8678 -3.0418 -4.2866 44 1 7.4071 -3.9472 -4.4166 45 1 6.8494 -1.3013 -3.0815 46 1 8.3475 -1.8799 -3.8629 47 1 7.6708 -1.9280 -1.0428 48 1 9.1689 -2.5074 -1.8245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069484648.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -78.570816 kcal Electronic energy + Delta-G solvation = -32639.347581 eV Core-core repulsion = 28137.831486 eV Total energy + Delta-G solvation = -4501.516095 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 352.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.49247 -49.12371 -40.12410 -39.04352 -37.72873 -35.38380 -34.18786 -32.39007 -32.04765 -30.60504 -29.18029 -28.22472 -27.73091 -26.91306 -24.28991 -23.17843 -22.01712 -21.92358 -20.33525 -20.03954 -19.10200 -18.44749 -17.55928 -17.40029 -16.84653 -16.56597 -16.01999 -15.85546 -15.80585 -15.57470 -15.48024 -15.14010 -14.71656 -14.54891 -14.18095 -14.07440 -13.83128 -13.47637 -13.26319 -13.06466 -12.88256 -12.58769 -12.40749 -12.28763 -12.20111 -12.10451 -11.68884 -11.60069 -11.31768 -11.15159 -10.97575 -10.86752 -10.76393 -10.66274 -10.29805 -10.00769 -9.90142 -9.47123 -9.26919 -9.05904 -8.96980 -8.74822 -8.17245 -8.04719 -6.19791 -4.21590 0.62340 0.67460 2.97826 3.27371 3.32606 3.34803 3.43972 3.58951 3.64059 4.09399 4.19067 4.25639 4.35004 4.38248 4.47848 4.76511 4.80443 4.81947 5.07281 5.08874 5.15612 5.19800 5.27531 5.38395 5.46777 5.52103 5.55297 5.58819 5.63533 5.68077 5.72648 5.76284 5.80861 5.81608 5.93812 5.97185 6.17375 6.24653 6.29775 6.43555 6.57812 6.79555 6.81520 6.98718 7.11712 7.17920 7.37223 7.49424 8.18842 8.57189 8.78827 9.07546 9.41168 10.92247 Molecular weight = 352.17amu Principal moments of inertia in cm(-1) A = 0.015398 B = 0.002914 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.980113 B = 9604.836346 C =10262.603096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.224 3.776 10 N -0.710 5.710 11 C 0.502 3.498 12 O -0.528 6.528 13 C 0.024 3.976 14 N -0.505 5.505 15 C 0.094 3.906 16 C -0.143 4.143 17 C 0.131 3.869 18 F -0.125 7.125 19 C -0.166 4.166 20 C -0.063 4.063 21 C -0.166 4.166 22 C 0.154 3.846 23 F -0.122 7.122 24 C 0.065 3.935 25 C -0.156 4.156 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.129 4.129 29 H 0.267 0.733 30 H 0.024 0.976 31 H 0.019 0.981 32 H 0.394 0.606 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.118 0.882 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.907 -15.238 -1.937 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.102 3.898 10 N -0.360 5.360 11 C 0.287 3.713 12 O -0.405 6.405 13 C -0.107 4.107 14 N -0.227 5.227 15 C -0.034 4.034 16 C -0.146 4.146 17 C 0.111 3.889 18 F -0.104 7.104 19 C -0.185 4.185 20 C -0.082 4.082 21 C -0.185 4.185 22 C 0.134 3.866 23 F -0.100 7.100 24 C -0.043 4.043 25 C -0.194 4.194 26 C -0.156 4.156 27 C -0.159 4.159 28 C -0.167 4.167 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.037 0.963 32 H 0.227 0.773 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.136 0.864 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 24.418 -14.045 -1.644 28.217 hybrid contribution -0.620 -0.139 -0.534 0.831 sum 23.798 -14.184 -2.179 27.790 Atomic orbital electron populations 1.69880 1.06220 1.27379 1.49616 1.24794 0.94771 0.99158 0.93916 0.86825 0.80633 0.83277 0.79010 1.19909 1.20958 1.18445 1.21104 0.88636 0.95140 1.53097 0.90328 1.19429 0.95041 0.78711 0.96614 1.46160 1.05600 1.10879 1.73388 1.20233 0.82913 0.90610 0.77590 1.90476 1.54864 1.45949 1.49245 1.22301 0.88913 0.96366 1.03104 1.61792 1.09013 1.32506 1.19435 1.20927 0.88696 0.91770 1.01987 1.19756 0.97055 1.04498 0.93251 1.17208 0.90477 0.98285 0.82911 1.91427 1.82597 1.85189 1.51165 1.21159 0.92312 1.04241 1.00771 1.20828 1.00448 0.95621 0.91258 1.21243 0.91920 1.04263 1.01066 1.17160 0.89034 0.96947 0.83503 1.91562 1.77896 1.88819 1.51733 1.23015 0.97267 0.98887 0.85113 1.23287 0.99448 0.99609 0.97069 1.22282 0.99846 0.96714 0.96759 1.22073 0.99214 0.98046 0.96590 1.22517 0.99026 0.96589 0.98572 0.92307 0.95831 0.96337 0.77294 0.90631 0.88649 0.88927 0.93002 0.84106 0.83986 0.83971 0.89518 0.92030 0.89823 0.91780 0.92186 0.91758 0.92757 0.86377 0.93600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.54 -14.87 9.83 -34.44 -0.34 -15.21 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.51 4.50 -5.19 -0.02 5.48 16 10 N -0.71 -14.22 5.55 -61.47 -0.34 -14.56 16 11 C 0.50 9.42 6.12 -10.99 -0.07 9.36 16 12 O -0.53 -11.66 12.99 5.55 0.07 -11.58 16 13 C 0.02 0.34 5.05 -4.98 -0.03 0.31 16 14 N -0.50 -7.10 3.94 -227.53 -0.90 -8.00 16 15 C 0.09 1.08 4.74 -4.98 -0.02 1.05 16 16 C -0.14 -1.58 5.04 -104.49 -0.53 -2.11 16 17 C 0.13 1.31 6.40 -39.42 -0.25 1.05 16 18 F -0.13 -1.33 14.13 2.25 0.03 -1.30 16 19 C -0.17 -1.26 10.03 -39.50 -0.40 -1.66 16 20 C -0.06 -0.41 10.04 -39.60 -0.40 -0.81 16 21 C -0.17 -1.35 10.03 -39.50 -0.40 -1.75 16 22 C 0.15 1.67 7.24 -39.43 -0.29 1.38 16 23 F -0.12 -1.53 16.48 2.25 0.04 -1.49 16 24 C 0.06 0.90 2.67 -66.06 -0.18 0.72 16 25 C -0.16 -2.11 4.88 -24.55 -0.12 -2.23 16 26 C -0.12 -1.56 6.84 -24.88 -0.17 -1.73 16 27 C -0.12 -1.76 6.80 -25.61 -0.17 -1.93 16 28 C -0.13 -2.02 6.22 -25.61 -0.16 -2.18 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 31 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 32 H 0.39 6.96 8.32 -40.82 -0.34 6.62 16 33 H 0.08 0.94 5.49 -51.93 -0.28 0.66 16 34 H 0.10 1.16 7.69 -51.93 -0.40 0.76 16 35 H 0.09 1.00 7.31 -51.93 -0.38 0.62 16 36 H 0.05 0.54 7.61 -51.93 -0.40 0.15 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.09 1.13 3.60 -51.93 -0.19 0.94 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.28 4.44 -51.93 -0.23 1.05 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.12 2.27 4.71 -51.93 -0.24 2.03 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -32.41 380.27 -9.50 -41.92 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.61 Total: 6.35 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.63 Total: -8.14 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.46 Total: -48.45 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.07 Total: -11.58 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.07 Total: -2.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.41 -9.50 -41.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069484648.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.656 kcal (2) G-P(sol) polarization free energy of solvation -32.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds