Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.47224 * 2 1 4 4 C 1.53002 * 109.46662 * 239.99993 * 2 1 3 5 5 O 1.45195 * 109.47139 * 120.00238 * 2 1 3 6 6 C 1.34638 * 117.00297 * 59.99596 * 5 2 1 7 7 O 1.21512 * 119.99581 * 0.02562 * 6 5 2 8 8 N 1.34774 * 119.99975 * 180.02562 * 6 5 2 9 9 C 1.46504 * 119.99721 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46829 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47266 * 180.02562 * 10 9 8 12 12 O 1.21287 * 119.99578 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00755 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00646 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47443 * 270.00265 * 14 13 11 16 16 H 1.08001 * 120.00056 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00480 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99528 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00487 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46990 * 59.99741 * 19 17 15 21 21 H 1.48497 * 109.47011 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47086 * 300.00255 * 19 17 15 23 23 C 1.46505 * 119.99455 * 0.02562 * 13 11 10 24 24 C 1.50703 * 109.47064 * 90.00114 * 23 13 11 25 25 C 1.34515 * 125.79060 * 89.99944 * 24 23 13 26 26 C 1.41380 * 106.83832 * 179.97438 * 25 24 23 27 27 C 1.34506 * 106.84493 * 359.97438 * 26 25 24 28 28 O 1.34306 * 125.78568 * 269.69282 * 24 23 13 29 29 H 1.09000 * 109.46888 * 300.00447 * 1 2 3 30 30 H 1.09006 * 109.46941 * 60.00119 * 1 2 3 31 31 H 1.09000 * 109.47520 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47062 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.46689 * 300.00178 * 3 2 1 34 34 H 1.08993 * 109.46988 * 59.99608 * 3 2 1 35 35 H 1.08997 * 109.47607 * 299.99616 * 4 2 1 36 36 H 1.08993 * 109.47342 * 60.00461 * 4 2 1 37 37 H 1.09004 * 109.46375 * 180.02562 * 4 2 1 38 38 H 0.96993 * 120.00182 * 0.02562 * 8 6 5 39 39 H 1.09006 * 109.46869 * 60.00471 * 9 8 6 40 40 H 1.09002 * 109.47173 * 300.00257 * 9 8 6 41 41 H 1.09004 * 109.47424 * 60.00627 * 10 9 8 42 42 H 1.09002 * 109.47551 * 300.00146 * 10 9 8 43 43 H 1.09006 * 109.46911 * 30.00087 * 14 13 11 44 44 H 1.08996 * 109.47170 * 149.99599 * 14 13 11 45 45 H 0.97003 * 119.99687 * 180.02562 * 18 17 15 46 46 H 1.09002 * 109.47068 * 210.00083 * 23 13 11 47 47 H 1.09001 * 109.47372 * 330.00170 * 23 13 11 48 48 H 1.07996 * 126.58016 * 0.03378 * 25 24 23 49 49 H 1.08006 * 126.57610 * 179.97438 * 26 25 24 50 50 H 1.08005 * 125.79499 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0672 -2.6654 2.4171 9 6 1.6730 -4.0666 2.5836 10 6 2.2733 -4.6145 3.8799 11 6 1.8684 -6.0560 4.0509 12 8 1.1690 -6.5924 3.2178 13 7 2.2834 -6.7492 5.1297 14 6 1.8893 -8.1503 5.2962 15 6 0.5942 -8.2201 6.0634 16 1 0.1129 -7.3117 6.3943 17 6 0.0236 -9.4437 6.3431 18 7 0.6094 -10.5500 5.9397 19 14 -1.5815 -9.5303 7.2947 20 1 -2.6394 -8.8033 6.5481 21 1 -1.9815 -10.9505 7.4623 22 1 -1.3997 -8.9058 8.6297 23 6 3.1278 -6.1012 6.1363 24 6 2.2567 -5.4693 7.1913 25 6 1.8269 -6.0661 8.3176 26 6 1.0439 -5.1153 9.0117 27 6 1.0425 -3.9943 8.2685 28 8 1.7825 -4.2129 7.1692 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.6262 -2.2364 3.0836 39 1 2.0396 -4.6499 1.7389 40 1 0.5861 -4.1354 2.6285 41 1 1.9072 -4.0313 4.7249 42 1 3.3602 -4.5458 3.8346 43 1 1.7564 -8.6093 4.3165 44 1 2.6659 -8.6834 5.8447 45 1 0.2077 -11.4108 6.1361 46 1 3.7773 -6.8444 6.5988 47 1 3.7366 -5.3328 5.6598 48 1 2.0399 -7.0771 8.6318 49 1 0.5430 -5.2612 9.9574 50 1 0.5355 -3.0732 8.5156 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069487454.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -102.393851 kcal Electronic energy + Delta-G solvation = -31857.801570 eV Core-core repulsion = 27466.339946 eV Total energy + Delta-G solvation = -4391.461624 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16530 -40.82193 -39.24622 -37.54249 -35.44174 -35.01193 -34.12737 -32.75864 -32.56809 -30.77010 -30.04522 -27.64514 -27.56932 -27.49398 -25.46524 -24.45736 -22.60718 -21.70875 -21.33798 -20.40989 -20.21475 -18.73791 -18.05848 -17.21398 -16.93515 -16.55512 -16.37014 -16.29423 -15.52613 -15.35793 -15.19393 -14.81471 -14.59745 -14.55438 -14.29314 -14.10732 -13.58054 -13.38138 -12.81701 -12.73691 -12.54382 -12.47707 -12.41975 -12.28280 -12.17365 -12.11600 -12.10718 -11.83881 -11.71145 -11.49132 -11.48703 -11.28695 -11.18249 -10.95307 -10.60939 -10.51581 -10.22751 -10.13312 -9.73637 -9.43951 -9.19112 -9.08172 -8.44124 -8.17166 -7.81687 -6.04925 -4.07711 2.03090 2.08332 2.81718 3.00061 3.18686 3.31799 3.36401 3.39545 3.44737 3.80513 4.14796 4.45477 4.49838 4.53822 4.68375 4.82206 4.96877 5.04814 5.12993 5.22234 5.24697 5.30738 5.30795 5.38425 5.43204 5.45538 5.50973 5.53787 5.65067 5.66075 5.73783 5.74553 5.96302 5.97138 6.10453 6.12875 6.19253 6.31816 6.40215 6.43643 6.45580 6.89343 6.93874 7.34387 7.37147 7.42045 7.52567 7.91776 8.20484 8.22781 8.34521 8.83532 8.99659 9.56785 11.03569 Molecular weight = 352.19amu Principal moments of inertia in cm(-1) A = 0.012840 B = 0.002473 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.123753 B =11320.241398 C =12266.512674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.184 4.184 5 O -0.368 6.368 6 C 0.648 3.352 7 O -0.564 6.564 8 N -0.710 5.710 9 C 0.154 3.846 10 C -0.158 4.158 11 C 0.515 3.485 12 O -0.529 6.529 13 N -0.594 5.594 14 C 0.245 3.755 15 C -0.517 4.517 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.196 3.804 24 C -0.031 4.031 25 C -0.168 4.168 26 C -0.213 4.213 27 C -0.053 4.053 28 O -0.181 6.181 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.404 0.596 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.263 0.737 46 H 0.109 0.891 47 H 0.082 0.918 48 H 0.150 0.850 49 H 0.141 0.859 50 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.670 21.926 -3.142 23.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.283 6.283 6 C 0.401 3.599 7 O -0.452 6.452 8 N -0.369 5.369 9 C 0.031 3.969 10 C -0.199 4.199 11 C 0.301 3.699 12 O -0.405 6.405 13 N -0.326 5.326 14 C 0.126 3.874 15 C -0.556 4.556 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.535 5.535 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.202 1.202 23 C 0.071 3.929 24 C -0.082 4.082 25 C -0.188 4.188 26 C -0.232 4.232 27 C -0.121 4.121 28 O -0.078 6.078 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.238 0.762 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.073 0.927 46 H 0.127 0.873 47 H 0.100 0.900 48 H 0.168 0.832 49 H 0.159 0.841 50 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.977 21.377 -4.315 22.897 hybrid contribution -0.989 -0.028 1.334 1.661 sum 5.987 21.349 -2.981 22.372 Atomic orbital electron populations 1.22527 0.93995 1.05277 1.02378 1.22045 0.94402 0.91421 0.82191 1.21854 1.02181 0.92625 1.03052 1.22522 1.01495 1.03709 0.96404 1.86281 1.71716 1.23821 1.46462 1.18040 0.79066 0.80391 0.82393 1.90928 1.40823 1.70322 1.43176 1.44768 1.55630 1.13013 1.23533 1.21058 1.01054 0.77458 0.97309 1.21922 1.02635 0.96118 0.99202 1.19975 0.80657 0.87140 0.82124 1.90728 1.36749 1.70499 1.42562 1.48344 1.49975 1.14716 1.19519 1.19385 0.95538 0.73897 0.98535 1.21345 1.06985 0.92520 1.34760 0.92362 1.24884 0.97419 0.95560 0.96083 1.69916 1.39576 0.97621 1.46428 0.86629 0.84104 0.76837 0.80325 1.20283 1.21288 1.20230 1.19836 0.89767 0.96320 0.86972 1.22960 1.03527 0.82774 0.98958 1.21620 1.01038 1.00686 0.95458 1.21827 1.04751 0.94137 1.02525 1.23830 1.00176 1.00975 0.87117 1.83928 1.53209 1.30538 1.40136 0.92189 0.91215 0.89212 0.91514 0.90213 0.91506 0.89218 0.91215 0.92209 0.76154 0.90152 0.90144 0.88105 0.88677 0.93524 0.94818 0.92730 0.87342 0.89980 0.83217 0.84079 0.78825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 8.37 37.16 0.31 -1.54 16 2 C 0.14 1.35 1.13 -90.61 -0.10 1.25 16 3 C -0.14 -0.97 8.85 37.16 0.33 -0.64 16 4 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 5 O -0.37 -4.36 9.94 -40.32 -0.40 -4.76 16 6 C 0.65 8.90 8.06 54.05 0.44 9.34 16 7 O -0.56 -9.30 11.88 -19.28 -0.23 -9.52 16 8 N -0.71 -8.47 5.56 -65.27 -0.36 -8.83 16 9 C 0.15 2.20 4.96 -4.04 -0.02 2.18 16 10 C -0.16 -2.14 4.37 -27.88 -0.12 -2.26 16 11 C 0.52 10.02 7.67 -10.99 -0.08 9.94 16 12 O -0.53 -12.79 15.56 5.55 0.09 -12.70 16 13 N -0.59 -11.61 2.44 -176.43 -0.43 -12.04 16 14 C 0.25 6.03 5.20 -5.20 -0.03 6.00 16 15 C -0.52 -14.05 9.13 -34.44 -0.31 -14.37 16 16 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 18 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 19 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 C 0.20 2.89 5.78 -5.19 -0.03 2.86 16 24 C -0.03 -0.50 6.85 -35.62 -0.24 -0.75 16 25 C -0.17 -2.85 10.39 -39.70 -0.41 -3.27 16 26 C -0.21 -3.21 10.91 -39.71 -0.43 -3.64 16 27 C -0.05 -0.72 12.09 29.41 0.36 -0.36 16 28 O -0.18 -2.72 9.56 5.68 0.05 -2.66 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.40 3.64 8.58 -40.82 -0.35 3.29 16 39 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 41 H 0.10 1.30 6.93 -51.93 -0.36 0.94 16 42 H 0.09 0.98 7.40 -51.93 -0.38 0.59 16 43 H 0.05 1.31 7.42 -51.93 -0.39 0.93 16 44 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 45 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.11 1.46 7.89 -51.93 -0.41 1.05 16 47 H 0.08 0.90 6.44 -51.93 -0.33 0.57 16 48 H 0.15 2.64 8.06 -52.49 -0.42 2.21 16 49 H 0.14 1.85 8.06 -52.48 -0.42 1.42 16 50 H 0.19 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 414.32 15.07 6.24 6.24 Total: -1.00 -34.76 414.32 -7.32 -42.08 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.85 Total: 5.76 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.14 Total: 4.89 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.06 Total: -46.17 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.49 Total: -29.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.76 -7.32 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069487454.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.315 kcal (2) G-P(sol) polarization free energy of solvation -34.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds