Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99957 * 2 1 4 4 H 1.48504 * 109.46904 * 270.00083 * 3 2 1 5 5 H 1.48501 * 109.47179 * 29.99891 * 3 2 1 6 6 H 1.48500 * 109.47116 * 150.00228 * 3 2 1 7 7 C 1.37881 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99911 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99830 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.46886 * 179.97438 * 9 7 2 11 11 O 1.42906 * 109.46850 * 180.02562 * 10 9 7 12 12 C 1.35979 * 116.99758 * 180.02562 * 11 10 9 13 13 C 1.38792 * 120.49690 * 0.26198 * 12 11 10 14 14 C 1.38786 * 118.44647 * 180.26175 * 13 12 11 15 15 C 1.38091 * 119.35750 * 359.45641 * 14 13 12 16 16 N 1.31953 * 120.95463 * 0.30126 * 15 14 13 17 17 C 1.32288 * 121.69246 * 359.97352 * 16 15 14 18 18 N 1.39492 * 119.72903 * 180.02562 * 17 16 15 19 19 C 1.34770 * 120.00016 * 0.02562 * 18 17 16 20 20 O 1.21560 * 120.00344 * 359.97438 * 19 18 17 21 21 C 1.47807 * 120.00251 * 179.97438 * 19 18 17 22 22 C 1.39618 * 120.18309 * 0.02562 * 21 19 18 23 23 C 1.37806 * 119.78035 * 179.97438 * 22 21 19 24 24 C 1.38663 * 120.41532 * 359.97438 * 23 22 21 25 25 C 1.38374 * 120.08261 * 0.02562 * 24 23 22 26 26 C 1.38233 * 119.99990 * 359.71625 * 25 24 23 27 27 C 1.51403 * 109.74658 * 179.97438 * 25 24 23 28 28 C 1.54336 * 105.16935 * 17.22575 * 27 25 24 29 29 C 1.51424 * 130.21699 * 179.97438 * 24 23 22 30 30 H 0.97005 * 119.99907 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47258 * 60.00214 * 9 7 2 32 32 H 1.09007 * 109.47327 * 300.00076 * 9 7 2 33 33 H 1.09007 * 109.47250 * 60.00661 * 10 9 7 34 34 H 1.08993 * 109.47155 * 300.00085 * 10 9 7 35 35 H 1.07992 * 120.78019 * 0.02562 * 13 12 11 36 36 H 1.08002 * 120.32371 * 179.73694 * 14 13 12 37 37 H 1.07996 * 119.52010 * 180.27913 * 15 14 13 38 38 H 0.96997 * 119.99516 * 179.97438 * 18 17 16 39 39 H 1.07993 * 120.11105 * 0.02562 * 22 21 19 40 40 H 1.08000 * 119.79010 * 179.97438 * 23 22 21 41 41 H 1.07997 * 119.95774 * 180.30284 * 26 25 24 42 42 H 1.09001 * 110.29665 * 136.14444 * 27 25 24 43 43 H 1.08996 * 110.30232 * 258.20159 * 27 25 24 44 44 H 1.09000 * 110.81594 * 91.81353 * 28 27 25 45 45 H 1.08997 * 110.81362 * 215.15952 * 28 27 25 46 46 H 1.08995 * 110.30188 * 281.73085 * 29 24 23 47 47 H 1.08997 * 110.30021 * 43.87548 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0014 11 8 5.4505 -2.6365 0.0014 12 6 6.0678 -3.8481 0.0021 13 6 5.3220 -5.0186 -0.0028 14 6 5.9959 -6.2319 0.0036 15 6 7.3768 -6.2393 0.0032 16 7 8.0616 -5.1114 0.0027 17 6 7.4601 -3.9332 0.0021 18 7 8.2245 -2.7663 0.0011 19 6 9.5701 -2.8422 0.0002 20 8 10.1177 -3.9275 0.0008 21 6 10.3801 -1.6058 -0.0015 22 6 9.7552 -0.3573 -0.0016 23 6 10.5185 0.7901 -0.0027 24 6 11.9029 0.7122 -0.0030 25 6 12.5282 -0.5222 -0.0029 26 6 11.7726 -1.6797 0.0035 27 6 14.0306 -0.3345 -0.0040 28 6 14.2553 1.1275 0.4363 29 6 12.9440 1.8118 -0.0046 30 1 -0.4850 0.8401 -0.0004 31 1 3.8752 -0.6797 0.8894 32 1 3.8745 -0.6808 -0.8906 33 1 3.6579 -3.1514 -0.8880 34 1 3.6585 -3.1493 0.8920 35 1 4.2426 -4.9861 -0.0076 36 1 5.4457 -7.1612 0.0044 37 1 7.9038 -7.1820 0.0037 38 1 7.7875 -1.9004 0.0002 39 1 8.6773 -0.2909 -0.0001 40 1 10.0353 1.7560 -0.0032 41 1 12.2614 -2.6427 0.0086 42 1 14.4976 -1.0189 0.7043 43 1 14.4311 -0.4955 -1.0049 44 1 14.3816 1.1915 1.5170 45 1 15.1133 1.5596 -0.0787 46 1 13.0527 2.2282 -1.0061 47 1 12.6691 2.5939 0.7031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069586049.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = -7.169654 kcal Electronic energy + Delta-G solvation = -29448.734108 eV Core-core repulsion = 25368.710635 eV Total energy + Delta-G solvation = -4080.023473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.10761 -40.39779 -39.08807 -37.87061 -35.79599 -34.95206 -33.46280 -31.81362 -31.70438 -31.04014 -29.96190 -28.80976 -27.73764 -25.67793 -24.47122 -23.03706 -22.60477 -22.23762 -21.18051 -20.74418 -19.97894 -18.60754 -17.85488 -17.36070 -16.63347 -16.26703 -16.04730 -15.90664 -15.62733 -15.32882 -15.06463 -15.01962 -14.62712 -14.27527 -14.04458 -13.84570 -13.66254 -13.41694 -13.26444 -13.11385 -12.83199 -12.59454 -12.24819 -12.19634 -12.08637 -11.90720 -11.58070 -11.28032 -11.26653 -11.10707 -11.00526 -10.78170 -10.44270 -10.27930 -10.17362 -9.95143 -9.46243 -9.29479 -9.13011 -9.12391 -8.85932 -8.71020 -7.74240 -6.21709 -4.23490 0.54077 1.08309 1.23391 1.38675 2.74024 2.76959 3.20937 3.28829 3.31580 3.40520 3.58522 3.97121 3.98886 4.15448 4.30465 4.33372 4.59941 4.64579 4.65881 4.76752 4.87354 4.89835 5.02777 5.04015 5.12035 5.18831 5.26458 5.29830 5.36896 5.41189 5.41899 5.51424 5.65930 5.74407 5.74652 5.77166 5.81025 5.98663 6.03287 6.06407 6.13852 6.25830 6.27136 6.34266 6.52003 6.60015 6.91744 7.09885 7.17550 7.47995 7.61116 7.98440 8.26866 8.29279 8.78531 9.37829 10.90689 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.008122 B = 0.002775 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3446.700264 B =10087.236412 C =13489.677523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.008 4.008 10 C 0.073 3.927 11 O -0.321 6.321 12 C 0.067 3.933 13 C -0.145 4.145 14 C -0.159 4.159 15 C 0.077 3.923 16 N -0.444 5.444 17 C 0.329 3.671 18 N -0.648 5.648 19 C 0.551 3.449 20 O -0.476 6.476 21 C -0.132 4.132 22 C -0.084 4.084 23 C -0.112 4.112 24 C -0.073 4.073 25 C -0.108 4.108 26 C -0.046 4.046 27 C -0.082 4.082 28 C -0.121 4.121 29 C -0.086 4.086 30 H 0.267 0.733 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.422 0.578 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.135 0.865 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.598 -1.479 0.086 25.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.093 0.907 9 C -0.045 4.045 10 C -0.001 4.001 11 O -0.233 6.233 12 C 0.015 3.985 13 C -0.172 4.172 14 C -0.180 4.180 15 C -0.079 4.079 16 N -0.159 5.159 17 C 0.097 3.903 18 N -0.296 5.296 19 C 0.339 3.661 20 O -0.347 6.347 21 C -0.135 4.135 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.073 4.073 25 C -0.109 4.109 26 C -0.064 4.064 27 C -0.119 4.119 28 C -0.158 4.158 29 C -0.123 4.123 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.261 0.739 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.153 0.847 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.866 -1.916 0.091 26.934 hybrid contribution -1.363 1.153 -0.041 1.786 sum 25.503 -0.763 0.050 25.514 Atomic orbital electron populations 1.69888 1.06289 1.27305 1.49839 1.24939 0.94770 0.99225 0.94056 0.86756 0.80419 0.83314 0.78752 1.20034 1.21135 1.18781 1.20805 0.88208 0.94981 1.52704 0.90715 1.19587 0.97059 0.89962 0.97898 1.23151 0.73901 1.02289 1.00729 1.86042 1.24632 1.24801 1.87872 1.19536 0.90944 0.87029 1.00973 1.21636 1.01290 0.91359 1.02884 1.21923 0.95514 0.98277 1.02254 1.22442 0.91147 0.95565 0.98793 1.67629 1.38487 0.96290 1.13455 1.17752 0.84539 0.87084 1.00967 1.43321 1.06228 1.07931 1.72135 1.18347 0.81421 0.89226 0.77155 1.90857 1.70720 1.28494 1.44658 1.19729 0.93979 0.92631 1.07164 1.21294 1.00097 0.91489 0.97409 1.20585 0.92350 0.98696 1.01413 1.20864 0.93763 0.95645 0.97077 1.20539 0.96177 0.92890 1.01250 1.20659 0.91736 0.98473 0.95575 1.21059 0.91120 0.97335 1.02339 1.22302 0.97199 0.94656 1.01661 1.21129 0.92500 0.96254 1.02406 0.92363 0.95369 0.95798 0.92292 0.92266 0.83526 0.84614 0.82486 0.73915 0.85063 0.85307 0.84727 0.90449 0.90000 0.90807 0.90361 0.89794 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.96 55.43 0.77 -25.64 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 7 C -0.53 -14.21 9.66 -34.44 -0.33 -14.54 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.17 4.41 -27.89 -0.12 -0.29 16 10 C 0.07 1.37 4.70 37.16 0.17 1.55 16 11 O -0.32 -5.58 9.38 -19.67 -0.18 -5.76 16 12 C 0.07 1.08 6.72 -38.91 -0.26 0.81 16 13 C -0.15 -2.06 9.14 -39.17 -0.36 -2.42 16 14 C -0.16 -1.93 10.10 -39.43 -0.40 -2.33 16 15 C 0.08 1.03 11.17 -17.55 -0.20 0.84 16 16 N -0.44 -7.38 7.87 -12.24 -0.10 -7.48 16 17 C 0.33 5.42 7.44 -154.50 -1.15 4.27 16 18 N -0.65 -9.63 5.34 -12.16 -0.06 -9.70 16 19 C 0.55 8.35 7.74 -12.35 -0.10 8.25 16 20 O -0.48 -8.55 14.59 5.31 0.08 -8.48 16 21 C -0.13 -1.65 5.87 -105.02 -0.62 -2.26 16 22 C -0.08 -0.90 9.54 -39.22 -0.37 -1.28 16 23 C -0.11 -1.07 10.02 -39.58 -0.40 -1.47 16 24 C -0.07 -0.67 6.14 -104.06 -0.64 -1.31 16 25 C -0.11 -1.05 6.12 -104.23 -0.64 -1.69 16 26 C -0.05 -0.52 9.59 -39.13 -0.38 -0.90 16 27 C -0.08 -0.56 6.77 -26.84 -0.18 -0.74 16 28 C -0.12 -0.67 7.08 -25.33 -0.18 -0.85 16 29 C -0.09 -0.55 6.77 -26.82 -0.18 -0.73 16 30 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 32 H 0.02 0.53 7.57 -51.92 -0.39 0.14 16 33 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 34 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 35 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.42 5.49 6.08 -40.82 -0.25 5.24 16 39 H 0.13 1.24 6.41 -52.49 -0.34 0.90 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.54 7.64 -52.49 -0.40 1.14 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -33.15 389.90 -10.99 -44.14 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.28 Total: 4.27 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -6.42 Total: -13.17 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.61 Total: -42.81 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.11 Total: -14.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.15 -10.99 -44.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069586049.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.968 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds