Wall clock time and date at job start Tue Mar 31 2020 06:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47459 * 2 1 4 4 C 1.53005 * 109.47503 * 240.00015 * 2 1 3 5 5 C 1.53001 * 109.47106 * 119.99814 * 2 1 3 6 6 N 1.46504 * 109.47221 * 64.46057 * 5 2 1 7 7 C 1.46497 * 120.00283 * 269.10767 * 6 5 2 8 8 C 1.50697 * 109.46942 * 278.24008 * 7 6 5 9 9 H 1.08003 * 119.99936 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00153 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00410 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99840 * 0.02562 * 10 8 7 13 13 H 1.48495 * 109.47060 * 89.99665 * 12 10 8 14 14 H 1.48501 * 109.47218 * 209.99909 * 12 10 8 15 15 H 1.48497 * 109.46936 * 329.99514 * 12 10 8 16 16 C 1.34783 * 119.99737 * 89.10024 * 6 5 2 17 17 O 1.21566 * 119.99956 * 5.97341 * 16 6 5 18 18 C 1.47695 * 119.99778 * 185.96778 * 16 6 5 19 19 C 1.40089 * 120.85519 * 151.26773 * 18 16 6 20 20 N 1.31945 * 119.01792 * 179.97438 * 19 18 16 21 21 C 1.32731 * 120.88958 * 359.97438 * 20 19 18 22 22 C 1.48178 * 119.04809 * 179.97438 * 21 20 19 23 23 C 1.39448 * 120.13663 * 359.97438 * 22 21 20 24 24 C 1.37986 * 119.86998 * 180.02562 * 23 22 21 25 25 C 1.38349 * 120.13066 * 359.97438 * 24 23 22 26 26 C 1.38342 * 120.26484 * 359.97438 * 25 24 23 27 27 C 1.37993 * 120.13415 * 0.02562 * 26 25 24 28 28 N 1.32721 * 121.89820 * 0.26315 * 21 20 19 29 29 C 1.31955 * 120.89078 * 359.47527 * 28 21 20 30 30 H 1.08997 * 109.46905 * 300.00352 * 1 2 3 31 31 H 1.09000 * 109.46777 * 60.00368 * 1 2 3 32 32 H 1.08996 * 109.47280 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47537 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46780 * 300.00151 * 3 2 1 35 35 H 1.09001 * 109.46700 * 59.99617 * 3 2 1 36 36 H 1.09002 * 109.46369 * 305.19786 * 4 2 1 37 37 H 1.08993 * 109.47049 * 65.19672 * 4 2 1 38 38 H 1.08995 * 109.46844 * 185.19971 * 4 2 1 39 39 H 1.09004 * 109.47292 * 304.46281 * 5 2 1 40 40 H 1.09003 * 109.47361 * 184.46368 * 5 2 1 41 41 H 1.09006 * 109.47033 * 38.24082 * 7 6 5 42 42 H 1.09003 * 109.47062 * 158.23855 * 7 6 5 43 43 H 0.97001 * 120.00004 * 180.02562 * 11 10 8 44 44 H 1.07998 * 120.49075 * 359.95127 * 19 18 16 45 45 H 1.08000 * 120.06226 * 0.05093 * 23 22 21 46 46 H 1.07997 * 119.93374 * 180.26149 * 24 23 22 47 47 H 1.07993 * 119.86390 * 179.97438 * 25 24 23 48 48 H 1.07995 * 119.93317 * 180.02562 * 26 25 24 49 49 H 1.07996 * 120.06476 * 179.97438 * 27 26 25 50 50 H 1.07997 * 120.49071 * 180.27895 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 2.0400 -0.7212 1.2493 6 7 1.6413 -2.1300 1.1968 7 6 0.3718 -2.5547 1.7918 8 6 0.5496 -2.7381 3.2770 9 1 1.5119 -2.5560 3.7322 10 6 -0.5165 -3.1372 4.0548 11 7 -0.3616 -3.2968 5.3510 12 14 -2.1812 -3.4514 3.2676 13 1 -2.2716 -4.8742 2.8521 14 1 -3.2564 -3.1525 4.2473 15 1 -2.3388 -2.5772 2.0776 16 6 2.4426 -3.0353 0.6010 17 8 3.5430 -2.7049 0.2038 18 6 1.9837 -4.4288 0.4308 19 6 2.4467 -5.2128 -0.6338 20 7 2.0132 -6.4535 -0.7510 21 6 1.1516 -6.9596 0.1226 22 6 0.6912 -8.3576 -0.0482 23 6 1.1607 -9.1240 -1.1145 24 6 0.7279 -10.4251 -1.2686 25 6 -0.1696 -10.9698 -0.3676 26 6 -0.6381 -10.2148 0.6927 27 6 -0.2126 -8.9125 0.8573 28 7 0.6862 -6.2477 1.1415 29 6 1.0752 -5.0011 1.3307 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6027 -1.7185 -1.2969 37 1 1.7548 -0.1565 -2.1367 38 1 3.1260 -0.8026 -1.2038 39 1 1.6128 -0.2556 2.1375 40 1 3.1271 -0.6525 1.2902 41 1 -0.3879 -1.7949 1.6079 42 1 0.0582 -3.4978 1.3442 43 1 -1.1115 -3.5780 5.8982 44 1 3.1479 -4.8075 -1.3483 45 1 1.8620 -8.7000 -1.8179 46 1 1.0941 -11.0209 -2.0916 47 1 -0.5057 -11.9884 -0.4926 48 1 -1.3383 -10.6456 1.3931 49 1 -0.5793 -8.3240 1.6853 50 1 0.6958 -4.4292 2.1646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069707964.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:12 Heat of formation + Delta-G solvation = 57.473930 kcal Electronic energy + Delta-G solvation = -31849.606059 eV Core-core repulsion = 27842.792925 eV Total energy + Delta-G solvation = -4006.813134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09786 -39.60067 -38.69484 -36.82246 -35.16051 -33.41351 -32.82464 -32.60953 -30.93316 -30.12143 -28.68463 -27.08519 -26.97792 -26.32119 -24.58446 -24.29691 -22.73602 -22.17792 -21.63460 -19.76451 -18.37667 -17.82683 -17.45355 -17.31663 -16.50728 -16.12503 -15.55093 -15.20959 -14.88671 -14.66478 -14.55099 -14.37055 -14.22108 -13.76434 -13.56882 -13.45811 -13.35408 -13.25954 -13.03595 -12.65997 -12.58268 -12.28552 -11.97741 -11.60700 -11.48190 -11.36074 -11.34026 -11.22051 -11.09871 -11.04030 -10.94101 -10.75137 -10.56834 -10.39320 -10.30745 -10.26009 -9.90274 -9.71239 -9.30442 -8.97153 -8.94125 -8.88896 -8.42907 -7.88420 -6.44544 -4.50539 0.35205 1.37663 1.39427 1.58919 3.08800 3.13806 3.18999 3.22058 3.55837 3.72310 3.88878 4.08786 4.23543 4.34892 4.80604 4.89525 4.90834 4.95728 5.00451 5.05103 5.07102 5.12137 5.20127 5.30444 5.41711 5.48464 5.56414 5.74258 5.76574 5.80768 5.86438 5.98092 6.02457 6.03289 6.08820 6.14414 6.15939 6.19961 6.22923 6.33803 6.36740 6.42529 6.44303 6.47321 6.57713 6.62821 6.67260 6.72209 6.89123 7.08049 7.18532 7.21874 7.87979 8.18643 8.26464 8.60295 8.68901 9.11211 10.66023 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.003717 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.253258 B = 7530.317239 C = 9446.212339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C -0.134 4.134 5 C 0.130 3.870 6 N -0.575 5.575 7 C 0.177 3.823 8 C -0.556 4.556 9 H 0.086 0.914 10 C 0.087 3.913 11 N -0.870 5.870 12 Si 0.854 3.146 13 H -0.260 1.260 14 H -0.277 1.277 15 H -0.261 1.261 16 C 0.571 3.429 17 O -0.554 6.554 18 C -0.245 4.245 19 C 0.198 3.802 20 N -0.526 5.526 21 C 0.359 3.641 22 C -0.044 4.044 23 C -0.071 4.071 24 C -0.135 4.135 25 C -0.103 4.103 26 C -0.133 4.133 27 C -0.069 4.069 28 N -0.516 5.516 29 C 0.167 3.833 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.272 0.728 44 H 0.175 0.825 45 H 0.136 0.864 46 H 0.125 0.875 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.140 0.860 50 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -4.852 -11.812 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.086 4.086 3 C -0.193 4.193 4 C -0.191 4.191 5 C 0.007 3.993 6 N -0.303 5.303 7 C 0.056 3.944 8 C -0.593 4.593 9 H 0.104 0.896 10 C -0.120 4.120 11 N -0.505 5.505 12 Si 0.678 3.322 13 H -0.185 1.185 14 H -0.202 1.202 15 H -0.185 1.185 16 C 0.359 3.641 17 O -0.435 6.435 18 C -0.252 4.252 19 C 0.031 3.969 20 N -0.240 5.240 21 C 0.095 3.905 22 C -0.046 4.046 23 C -0.091 4.091 24 C -0.153 4.153 25 C -0.122 4.122 26 C -0.151 4.151 27 C -0.088 4.088 28 N -0.230 5.230 29 C 0.003 3.997 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.192 0.808 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.140 0.860 48 H 0.144 0.856 49 H 0.158 0.842 50 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -0.421 -5.612 -11.917 13.179 hybrid contribution -0.726 0.723 -0.012 1.024 sum -1.146 -4.889 -11.929 12.943 Atomic orbital electron populations 1.22001 0.94677 1.02284 1.01173 1.20971 0.95966 0.95418 0.96291 1.21776 1.00964 0.95052 1.01543 1.21855 1.01827 0.99512 0.95928 1.21466 1.00554 0.80175 0.97067 1.47661 1.21450 1.07189 1.54014 1.20741 0.82269 0.96817 0.94564 1.21339 0.99636 1.48595 0.89744 0.89580 1.24901 0.98509 0.93891 0.94687 1.69865 1.32360 1.43594 1.04686 0.87162 0.84293 0.80502 0.80208 1.18461 1.20228 1.18518 1.17618 0.84422 0.83977 0.78132 1.90699 1.20264 1.80321 1.52190 1.21882 1.04040 0.98118 1.01181 1.23237 0.92421 0.87590 0.93670 1.68342 1.13408 1.13586 1.28675 1.21562 0.88511 0.93968 0.86422 1.18144 0.99576 0.89492 0.97427 1.21344 0.97991 0.93414 0.96351 1.21087 0.98869 0.95335 1.00026 1.21313 0.96669 0.99705 0.94530 1.21130 1.01037 0.94216 0.98672 1.21463 0.94326 0.94953 0.98080 1.68641 1.26463 1.07678 1.20173 1.26088 0.86708 0.89288 0.97617 0.92394 0.93390 0.92060 0.92602 0.92844 0.92525 0.93373 0.93707 0.91660 0.89627 0.90337 0.93671 0.94154 0.91773 0.80849 0.84575 0.85693 0.85975 0.85550 0.84221 0.75013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 7.50 37.16 0.28 -1.78 16 2 C -0.09 -1.23 0.85 -154.50 -0.13 -1.36 16 3 C -0.14 -1.62 8.47 37.16 0.31 -1.30 16 4 C -0.13 -1.97 7.12 37.16 0.26 -1.70 16 5 C 0.13 2.22 4.60 -4.04 -0.02 2.20 16 6 N -0.57 -11.04 2.00 -176.22 -0.35 -11.39 16 7 C 0.18 3.67 3.01 -5.20 -0.02 3.65 16 8 C -0.56 -13.53 8.11 -34.44 -0.28 -13.81 16 9 H 0.09 2.36 8.06 -52.48 -0.42 1.93 16 10 C 0.09 2.20 5.33 -17.82 -0.10 2.11 16 11 N -0.87 -23.70 13.96 55.43 0.77 -22.93 16 12 Si 0.85 18.67 27.30 -169.99 -4.64 14.03 16 13 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 16 C 0.57 11.24 5.71 -12.39 -0.07 11.17 16 17 O -0.55 -11.41 14.69 5.31 0.08 -11.33 16 18 C -0.24 -4.68 5.62 -104.64 -0.59 -5.27 16 19 C 0.20 3.38 10.89 -16.81 -0.18 3.20 16 20 N -0.53 -9.05 9.42 -10.83 -0.10 -9.15 16 21 C 0.36 6.46 7.55 -156.78 -1.18 5.27 16 22 C -0.04 -0.69 5.88 -104.91 -0.62 -1.30 16 23 C -0.07 -0.93 9.56 -39.22 -0.38 -1.30 16 24 C -0.14 -1.43 10.03 -39.63 -0.40 -1.82 16 25 C -0.10 -1.04 10.04 -39.50 -0.40 -1.44 16 26 C -0.13 -1.51 10.03 -39.63 -0.40 -1.91 16 27 C -0.07 -0.98 9.56 -39.22 -0.38 -1.35 16 28 N -0.52 -10.23 9.42 -10.84 -0.10 -10.34 16 29 C 0.17 3.41 8.80 -16.80 -0.15 3.27 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.98 5.81 -51.93 -0.30 0.67 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.77 6.63 -51.93 -0.34 0.43 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 1.02 7.23 -51.93 -0.38 0.65 16 39 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 40 H 0.08 1.37 7.37 -51.93 -0.38 0.98 16 41 H 0.05 0.92 4.82 -51.93 -0.25 0.67 16 42 H 0.04 0.86 3.45 -51.96 -0.18 0.68 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.17 2.55 7.97 -52.49 -0.42 2.13 16 45 H 0.14 1.70 7.50 -52.49 -0.39 1.30 16 46 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 48 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 49 H 0.14 2.11 7.50 -52.49 -0.39 1.72 16 50 H 0.23 5.20 2.92 -52.49 -0.15 5.04 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -27.86 394.87 -9.82 -37.67 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -7.01 Total: 10.97 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -4.41 Total: -3.48 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.22 Total: -53.81 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.08 Total: -11.33 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.64 Total: 14.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -27.86 -9.82 -37.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069707964.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.148 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds