Wall clock time and date at job start Tue Mar 31 2020 05:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47343 * 2 1 4 4 S 1.81404 * 109.47280 * 120.00234 * 2 1 3 5 5 C 1.81394 * 102.99743 * 294.99640 * 4 2 1 6 6 C 1.53008 * 109.47072 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.46932 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00097 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99357 * 180.02562 * 7 6 5 10 10 C 1.37094 * 119.99729 * 180.02562 * 9 7 6 11 11 H 1.07998 * 120.00332 * 17.71468 * 10 9 7 12 12 C 1.38958 * 119.99875 * 197.72402 * 10 9 7 13 13 N 1.31404 * 119.99849 * 21.41808 * 12 10 9 14 14 Si 1.86805 * 119.99883 * 201.41471 * 12 10 9 15 15 H 1.48500 * 109.47024 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.46862 * 119.99964 * 14 12 10 17 17 H 1.48493 * 109.47016 * 240.00231 * 14 12 10 18 18 C 1.46501 * 120.00515 * 359.97438 * 9 7 6 19 19 C 1.47195 * 109.47098 * 84.22922 * 18 9 7 20 20 N 7.60497 * 118.12417 * 94.63669 * 2 1 3 21 21 C 1.50706 * 109.46989 * 240.00352 * 2 1 3 22 22 C 1.38241 * 119.98799 * 119.99935 * 21 2 1 23 23 C 1.38213 * 120.01135 * 180.02562 * 22 21 2 24 24 C 1.38348 * 119.98693 * 359.97438 * 23 22 21 25 25 Cl 1.73600 * 120.01125 * 180.02562 * 24 23 22 26 26 C 1.38354 * 119.97620 * 0.26940 * 24 23 22 27 27 C 1.38209 * 119.98291 * 359.49658 * 26 24 23 28 28 H 1.08999 * 109.47450 * 59.99786 * 1 2 3 29 29 H 1.08996 * 109.47323 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46800 * 299.99951 * 1 2 3 31 31 H 1.08994 * 109.47422 * 299.99755 * 5 4 2 32 32 H 1.09006 * 109.47013 * 60.00356 * 5 4 2 33 33 H 1.09003 * 109.46992 * 300.00170 * 6 5 4 34 34 H 1.08994 * 109.46892 * 59.99917 * 6 5 4 35 35 H 0.97007 * 119.99769 * 180.02562 * 13 12 10 36 36 H 1.08993 * 109.47215 * 204.23583 * 18 9 7 37 37 H 1.09006 * 109.46916 * 324.23111 * 18 9 7 38 38 H 1.07998 * 119.99540 * 359.97438 * 22 21 2 39 39 H 1.08002 * 120.00249 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.00858 * 179.72041 * 26 24 23 41 41 H 1.08001 * 119.99405 * 180.22830 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8552 1.4811 5 6 1.5665 0.2152 2.8308 6 6 2.0040 -0.3786 4.1714 7 6 1.5315 0.5104 5.2927 8 8 0.9059 1.5193 5.0442 9 7 1.8041 0.1842 6.5717 10 6 1.3738 0.9926 7.5919 11 1 0.5917 1.7160 7.4145 12 6 1.9440 0.8814 8.8542 13 7 3.1342 0.3419 8.9922 14 14 1.0187 1.4990 10.3548 15 1 -0.2907 2.0587 9.9333 16 1 0.7949 0.3728 11.2964 17 1 1.8158 2.5559 11.0275 18 6 2.5592 -1.0347 6.8719 19 6 4.0009 -0.7572 6.7666 20 7 5.1148 -0.5422 6.6851 21 6 2.0322 -0.7104 -1.2306 22 6 2.8270 -0.0382 -2.1403 23 6 3.2875 -0.6891 -3.2693 24 6 2.9534 -2.0136 -3.4885 25 17 3.5320 -2.8319 -4.9060 26 6 2.1538 -2.6843 -2.5802 27 6 1.6979 -2.0338 -1.4492 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8901 31 1 2.0002 1.2083 2.7141 32 1 0.4792 0.2881 2.8037 33 1 1.5699 -1.3716 4.2879 34 1 3.0912 -0.4518 4.1987 35 1 3.5322 0.2640 9.8735 36 1 2.3260 -1.3668 7.8835 37 1 2.2866 -1.8152 6.1614 38 1 3.0874 0.9958 -1.9693 39 1 3.9080 -0.1637 -3.9802 40 1 1.8889 -3.7169 -2.7531 41 1 1.0768 -2.5583 -0.7382 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069770557.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:24 Heat of formation + Delta-G solvation = 8.856880 kcal Electronic energy + Delta-G solvation = -24660.789326 eV Core-core repulsion = 20885.947742 eV Total energy + Delta-G solvation = -3774.841584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.075 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.80648 -38.96202 -36.90626 -35.88605 -34.43257 -34.34966 -32.53967 -31.68518 -31.43449 -29.54262 -27.51680 -25.67602 -24.44189 -23.43993 -23.12539 -21.31815 -19.13069 -17.97188 -17.54340 -16.82016 -16.52580 -16.30002 -15.96820 -15.18518 -15.00536 -14.89438 -14.43652 -14.27401 -14.07024 -13.87863 -13.62256 -13.36306 -13.07996 -13.02308 -12.70041 -12.50296 -12.19093 -12.07097 -11.87357 -11.69716 -11.60184 -11.56444 -11.36673 -11.28653 -11.14982 -11.09197 -10.98819 -10.59611 -10.41486 -10.34270 -9.87614 -9.37247 -9.32783 -8.89565 -8.67231 -8.11104 -7.66808 -6.56078 -4.05600 0.63894 0.95762 1.71323 1.79802 2.55350 3.04585 3.19187 3.25095 3.33257 3.49270 3.73713 3.94360 4.08205 4.22095 4.39057 4.54614 4.73126 4.74479 4.84584 4.91391 5.01869 5.10777 5.13300 5.16413 5.23419 5.31511 5.42531 5.54335 5.57906 5.61799 5.76447 5.83920 5.87626 5.93305 6.02516 6.14267 6.17014 6.19154 6.42667 6.46247 7.41910 7.82825 8.21326 8.70922 8.93365 9.13167 9.65645 10.49975 Molecular weight = 352.08amu Principal moments of inertia in cm(-1) A = 0.025097 B = 0.001848 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.388038 B =15145.476104 C =15796.953081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 H 0.096 0.904 4 S -0.255 6.255 5 C -0.059 4.059 6 C -0.121 4.121 7 C 0.460 3.540 8 O -0.575 6.575 9 N -0.440 5.440 10 C -0.314 4.314 11 H 0.109 0.891 12 C 0.032 3.968 13 N -0.875 5.875 14 Si 0.927 3.073 15 H -0.267 1.267 16 H -0.278 1.278 17 H -0.283 1.283 18 C 0.221 3.779 19 C 0.244 3.756 20 N -0.470 5.470 21 C -0.057 4.057 22 C -0.093 4.093 23 C -0.110 4.110 24 C -0.034 4.034 25 Cl -0.075 7.075 26 C -0.109 4.109 27 C -0.087 4.087 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.273 0.727 36 H 0.128 0.872 37 H 0.085 0.915 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.249 -7.277 -21.120 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 H 0.114 0.886 4 S -0.025 6.025 5 C -0.208 4.208 6 C -0.162 4.162 7 C 0.247 3.753 8 O -0.458 6.458 9 N -0.160 5.160 10 C -0.441 4.441 11 H 0.127 0.873 12 C -0.172 4.172 13 N -0.514 5.514 14 Si 0.753 3.247 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.209 1.209 18 C 0.093 3.907 19 C -0.074 4.074 20 N -0.150 5.150 21 C -0.058 4.058 22 C -0.113 4.113 23 C -0.129 4.129 24 C -0.061 4.061 25 Cl -0.046 7.046 26 C -0.128 4.128 27 C -0.106 4.106 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.146 0.854 37 H 0.103 0.897 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.172 -7.498 -21.210 22.601 hybrid contribution -1.078 1.282 0.859 1.882 sum -3.251 -6.217 -20.351 21.526 Atomic orbital electron populations 1.22124 0.92068 1.03478 1.02803 1.22014 0.99023 1.01173 0.92622 0.88557 1.86898 1.76138 1.38797 1.00632 1.23121 1.04266 1.00074 0.93317 1.21335 1.02702 1.00122 0.92087 1.19919 0.85196 0.87093 0.83125 1.90541 1.44278 1.27998 1.83026 1.43633 1.47207 1.20272 1.04931 1.19758 1.18691 1.18700 0.86975 0.87300 1.25300 0.94803 0.97438 0.99682 1.69871 1.12293 1.44426 1.24814 0.85851 0.79809 0.78435 0.80579 1.19081 1.20405 1.20879 1.18754 0.79632 0.87856 1.04463 1.29338 0.95056 0.92522 0.90519 1.80961 1.13735 1.08423 1.11903 1.19412 0.97584 0.94335 0.94489 1.21018 0.96653 1.00347 0.93305 1.21013 1.00679 0.92814 0.98374 1.20968 1.00791 0.93723 0.90667 1.98373 1.87791 1.79108 1.39295 1.21051 0.97559 1.00548 0.93645 1.21049 0.99238 0.93829 0.96522 0.91671 0.91094 0.91378 0.89503 0.89173 0.89109 0.89471 0.91596 0.85432 0.89712 0.84879 0.84814 0.84769 0.84396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.91 37.15 0.33 -0.96 16 2 C -0.02 -0.20 3.01 -27.88 -0.08 -0.28 16 3 H 0.10 0.93 7.88 -51.92 -0.41 0.52 16 4 S -0.26 -3.22 20.76 -107.50 -2.23 -5.45 16 5 C -0.06 -0.87 4.93 37.16 0.18 -0.69 16 6 C -0.12 -1.98 4.31 -27.88 -0.12 -2.10 16 7 C 0.46 9.89 7.57 -10.98 -0.08 9.81 16 8 O -0.58 -14.25 15.63 5.56 0.09 -14.16 16 9 N -0.44 -9.91 2.60 -117.94 -0.31 -10.22 16 10 C -0.31 -7.87 9.32 -14.93 -0.14 -8.01 16 11 H 0.11 2.89 7.39 -52.49 -0.39 2.50 16 12 C 0.03 0.76 4.86 -17.47 -0.08 0.68 16 13 N -0.88 -21.70 9.48 55.50 0.53 -21.17 16 14 Si 0.93 19.21 29.60 -169.99 -5.03 14.18 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.22 4.23 4.91 -6.83 -0.03 4.19 16 19 C 0.24 5.30 12.95 -20.72 -0.27 5.03 16 20 N -0.47 -11.09 18.55 42.20 0.78 -10.30 16 21 C -0.06 -0.54 4.78 -104.62 -0.50 -1.04 16 22 C -0.09 -0.80 9.67 -39.59 -0.38 -1.19 16 23 C -0.11 -0.92 9.83 -39.55 -0.39 -1.31 16 24 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 25 Cl -0.07 -0.63 28.96 -51.86 -1.50 -2.13 16 26 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 27 C -0.09 -0.78 8.78 -39.59 -0.35 -1.13 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.59 7.39 -51.93 -0.38 0.21 16 30 H 0.07 0.65 6.92 -51.92 -0.36 0.29 16 31 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 32 H 0.09 1.31 7.10 -51.92 -0.37 0.94 16 33 H 0.09 1.26 7.42 -51.93 -0.39 0.88 16 34 H 0.09 1.47 7.51 -51.93 -0.39 1.08 16 35 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.13 2.51 6.46 -51.93 -0.34 2.17 16 37 H 0.09 1.23 6.68 -51.93 -0.35 0.88 16 38 H 0.13 0.93 7.94 -52.49 -0.42 0.52 16 39 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.14 1.14 7.58 -52.49 -0.40 0.75 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -29.89 377.82 -9.54 -39.43 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.00 Total: 3.01 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.56 Total: 1.12 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 1.00 Total: -41.70 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.09 Total: -14.16 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Atomic # 16 Polarization: -3.22 SS G_CDS: -2.23 Total: -5.45 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.89 -9.54 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069770557.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.290 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds