Wall clock time and date at job start Tue Mar 31 2020 05:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33323 * 122.71456 * 2 1 4 4 S 1.76161 * 108.09906 * 179.97438 * 3 2 1 5 5 C 1.70964 * 90.35609 * 0.02562 * 4 3 2 6 6 N 1.38611 * 124.94903 * 179.97438 * 5 4 3 7 7 C 1.46954 * 111.00234 * 292.77475 * 6 5 4 8 8 C 1.53044 * 109.36611 * 183.19061 * 7 6 5 9 9 N 1.46963 * 109.36463 * 301.59688 * 8 7 6 10 10 C 1.46900 * 111.00143 * 183.18931 * 9 8 7 11 11 C 1.50699 * 109.47210 * 174.44210 * 10 9 8 12 12 O 1.21281 * 119.99543 * 354.17212 * 11 10 9 13 13 N 1.34773 * 120.00170 * 174.17230 * 11 10 9 14 14 C 1.46497 * 119.99797 * 359.97438 * 13 11 10 15 15 C 1.46502 * 120.00091 * 179.97438 * 13 11 10 16 16 C 1.50700 * 109.46781 * 89.99580 * 15 13 11 17 17 H 1.07994 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99982 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00165 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99729 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47203 * 89.99682 * 20 18 16 22 22 H 1.48502 * 109.47089 * 210.00035 * 20 18 16 23 23 H 1.48497 * 109.47356 * 329.99993 * 20 18 16 24 24 C 1.46954 * 110.87795 * 59.31999 * 9 8 7 25 25 C 1.46954 * 111.00049 * 56.57450 * 6 5 4 26 26 H 1.08999 * 109.48863 * 296.77739 * 25 6 5 27 27 C 1.53002 * 109.49107 * 56.83884 * 25 6 5 28 28 N 1.29687 * 110.10404 * 0.24227 * 5 4 3 29 29 H 1.09004 * 109.47095 * 90.01701 * 1 2 3 30 30 H 1.08995 * 109.47805 * 210.02215 * 1 2 3 31 31 H 1.09006 * 109.47001 * 330.02798 * 1 2 3 32 32 H 1.08001 * 125.94718 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.49254 * 63.22114 * 7 6 5 34 34 H 1.09008 * 109.50490 * 303.16638 * 7 6 5 35 35 H 1.08996 * 109.49106 * 181.62940 * 8 7 6 36 36 H 1.08999 * 109.51225 * 61.57365 * 8 7 6 37 37 H 1.08999 * 109.47005 * 294.44510 * 10 9 8 38 38 H 1.09006 * 109.47127 * 54.44117 * 10 9 8 39 39 H 1.09005 * 109.46768 * 90.00421 * 14 13 11 40 40 H 1.09005 * 109.47350 * 209.99822 * 14 13 11 41 41 H 1.08992 * 109.47554 * 330.00079 * 14 13 11 42 42 H 1.08995 * 109.47034 * 210.00077 * 15 13 11 43 43 H 1.09000 * 109.47166 * 330.00650 * 15 13 11 44 44 H 0.97003 * 120.00180 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.48791 * 60.65030 * 24 9 8 46 46 H 1.09003 * 109.48636 * 180.71487 * 24 9 8 47 47 H 1.09002 * 109.47345 * 183.94685 * 27 25 6 48 48 H 1.08994 * 109.47497 * 303.95581 * 27 25 6 49 49 H 1.09004 * 109.46706 * 63.94900 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2275 1.1217 0.0000 4 16 3.9321 0.6772 0.0007 5 6 3.5110 -0.9797 0.0002 6 7 4.4166 -2.0291 0.0000 7 6 5.1628 -2.0806 -1.2650 8 6 6.0922 -3.2964 -1.2568 9 7 7.0084 -3.2018 -0.1117 10 6 7.9681 -4.3140 -0.1120 11 6 8.9730 -4.1107 0.9926 12 8 8.9623 -3.0858 1.6409 13 7 9.8834 -5.0678 1.2599 14 6 9.8958 -6.3060 0.4771 15 6 10.8606 -4.8699 2.3333 16 6 10.2980 -5.3969 3.6282 17 1 9.3114 -5.8358 3.6494 18 6 11.0432 -5.3199 4.7857 19 7 10.5524 -5.7802 5.9156 20 14 12.7499 -4.5614 4.7489 21 1 12.6493 -3.1033 5.0112 22 1 13.5957 -5.1950 5.7922 23 1 13.3614 -4.7831 3.4140 24 6 6.2622 -3.1504 1.1532 25 6 5.3327 -1.9345 1.1451 26 1 5.9259 -1.0238 1.0618 27 6 4.5247 -1.9008 2.4439 28 7 2.2209 -1.1118 -0.0056 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3634 -0.8897 0.5141 31 1 -0.3633 0.8903 0.5134 32 1 1.8345 2.1277 0.0004 33 1 5.7541 -1.1716 -1.3756 34 1 4.4634 -2.1630 -2.0970 35 1 6.6678 -3.3204 -2.1821 36 1 5.4993 -4.2073 -1.1738 37 1 7.4370 -5.2522 0.0482 38 1 8.4846 -4.3480 -1.0713 39 1 10.5483 -6.1827 -0.3874 40 1 10.2642 -7.1238 1.0965 41 1 8.8846 -6.5328 0.1397 42 1 11.7790 -5.4048 2.0917 43 1 11.0760 -3.8064 2.4371 44 1 11.0765 -5.7257 6.7300 45 1 5.6709 -4.0594 1.2638 46 1 6.9618 -3.0678 1.9850 47 1 5.1996 -1.7602 3.2882 48 1 3.8120 -1.0770 2.4072 49 1 3.9868 -2.8416 2.5615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069871313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:00 Heat of formation + Delta-G solvation = 47.668503 kcal Electronic energy + Delta-G solvation = -29524.660179 eV Core-core repulsion = 25614.751369 eV Total energy + Delta-G solvation = -3909.908810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.167 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.61143 -39.62469 -38.63501 -35.74548 -34.81131 -32.74863 -32.56558 -31.68185 -29.56276 -28.27597 -27.77755 -27.12449 -25.93078 -24.90493 -23.27511 -22.48105 -21.65249 -20.45890 -19.53935 -18.48455 -18.14451 -16.98204 -16.75762 -16.49571 -16.01035 -15.71763 -15.51184 -14.91209 -14.80054 -14.56619 -14.33010 -14.13612 -13.94630 -13.73938 -13.33668 -12.92192 -12.80770 -12.71789 -12.59862 -12.41715 -12.35877 -12.21470 -12.04160 -11.87445 -11.72276 -11.52826 -11.51546 -11.25446 -11.14878 -10.91199 -10.80018 -10.53191 -10.16485 -10.12896 -9.57750 -9.56289 -9.03189 -8.91169 -8.72475 -8.60453 -8.26521 -7.71361 -6.10327 -4.09239 0.46587 1.14384 1.56289 2.53459 2.98458 3.28125 3.30040 3.34183 3.36169 3.51946 4.07675 4.35785 4.38324 4.60512 4.74217 4.88049 4.94665 4.98941 5.00615 5.12595 5.14363 5.21823 5.25919 5.29860 5.33487 5.39051 5.44599 5.45725 5.58700 5.61585 5.63161 5.70693 5.77964 5.82381 5.88504 5.97999 6.08718 6.13329 6.21551 6.51728 6.56606 6.65908 6.87588 6.97367 7.04655 7.32020 7.59354 7.63370 8.22574 8.45137 8.91078 8.97915 9.50007 11.02962 Molecular weight = 352.17amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.002387 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.587990 B =11726.619284 C =12440.977506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.070 3.930 3 C -0.253 4.253 4 S 0.051 5.949 5 C 0.249 3.751 6 N -0.452 5.452 7 C 0.064 3.936 8 C 0.058 3.942 9 N -0.524 5.524 10 C 0.040 3.960 11 C 0.507 3.493 12 O -0.523 6.523 13 N -0.599 5.599 14 C 0.082 3.918 15 C 0.216 3.784 16 C -0.528 4.528 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C 0.056 3.944 25 C 0.092 3.908 26 H 0.067 0.933 27 C -0.147 4.147 28 N -0.457 5.457 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.175 0.825 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.037 0.963 44 H 0.265 0.735 45 H 0.042 0.958 46 H 0.118 0.882 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.295 9.141 -17.361 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.063 4.063 3 C -0.392 4.392 4 S 0.301 5.699 5 C -0.121 4.121 6 N -0.177 5.177 7 C -0.063 4.063 8 C -0.071 4.071 9 N -0.248 5.248 10 C -0.091 4.091 11 C 0.293 3.707 12 O -0.400 6.400 13 N -0.332 5.332 14 C -0.062 4.062 15 C 0.096 3.904 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.071 4.071 25 C -0.016 4.016 26 H 0.084 0.916 27 C -0.205 4.205 28 N -0.173 5.173 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.192 0.808 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.136 0.864 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.480 9.621 -16.818 24.188 hybrid contribution -0.053 0.157 0.107 0.198 sum -14.533 9.778 -16.711 24.209 Atomic orbital electron populations 1.20354 0.86970 1.03419 1.02917 1.20190 0.98123 0.86348 1.01618 1.26552 0.94471 1.03839 1.14345 1.84547 1.08281 1.08586 1.68473 1.25160 0.92680 0.91575 1.02706 1.58599 1.17312 1.36778 1.04986 1.22376 0.95185 0.99249 0.89491 1.22175 0.93450 0.96738 0.94716 1.61836 1.16606 1.43564 1.02819 1.22019 0.94442 0.92967 0.99709 1.20138 0.82056 0.83930 0.84590 1.90632 1.71072 1.27544 1.50720 1.47851 1.33615 1.16584 1.35149 1.21679 1.01013 0.88004 0.95480 1.19657 0.87263 0.97769 0.85730 1.21308 1.04173 1.40117 0.91073 0.90845 1.24860 0.98094 0.94841 0.95230 1.69895 1.37868 1.46443 0.99365 0.86848 0.84547 0.80133 0.78141 1.19890 1.21101 1.19083 1.22480 0.95374 0.95587 0.93700 1.21970 0.91194 0.99678 0.88724 0.91551 1.21868 1.00028 1.02702 0.95925 1.66434 1.03700 1.31054 1.16119 0.90671 0.90463 0.90708 0.80805 0.92412 0.89456 0.89375 0.93393 0.92125 0.88169 0.93575 0.90516 0.92268 0.95281 0.94495 0.92554 0.93959 0.86423 0.90526 0.92919 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.30 36.00 0.37 -0.19 16 2 C 0.07 0.75 6.74 -84.18 -0.57 0.18 16 3 C -0.25 -2.41 11.10 29.02 0.32 -2.09 16 4 S 0.05 0.56 22.22 -107.50 -2.39 -1.82 16 5 C 0.25 3.17 4.50 -87.68 -0.39 2.78 16 6 N -0.45 -5.84 4.61 -167.66 -0.77 -6.61 16 7 C 0.06 0.71 5.48 -3.77 -0.02 0.69 16 8 C 0.06 0.62 5.62 -3.77 -0.02 0.60 16 9 N -0.52 -7.38 4.49 -235.91 -1.06 -8.44 16 10 C 0.04 0.55 4.19 -4.98 -0.02 0.53 16 11 C 0.51 9.84 7.24 -10.99 -0.08 9.76 16 12 O -0.52 -12.25 13.85 5.56 0.08 -12.17 16 13 N -0.60 -11.89 2.86 -182.96 -0.52 -12.41 16 14 C 0.08 1.19 10.26 59.85 0.61 1.81 16 15 C 0.22 5.19 4.23 -5.19 -0.02 5.16 16 16 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 17 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 18 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 20 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 21 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 24 C 0.06 0.87 4.51 -3.77 -0.02 0.85 16 25 C 0.09 1.27 2.34 -67.66 -0.16 1.11 16 26 H 0.07 0.98 7.70 -51.93 -0.40 0.58 16 27 C -0.15 -1.97 9.09 37.16 0.34 -1.64 16 28 N -0.46 -6.05 10.59 -11.36 -0.12 -6.17 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 32 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.06 0.64 7.97 -51.93 -0.41 0.23 16 34 H 0.09 0.85 8.13 -51.92 -0.42 0.43 16 35 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.78 7.08 -51.93 -0.37 0.41 16 38 H 0.10 1.13 8.11 -51.93 -0.42 0.71 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 41 H 0.06 0.70 6.28 -51.93 -0.33 0.38 16 42 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 43 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.12 2.23 5.66 -51.93 -0.29 1.94 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 0.69 6.99 -51.93 -0.36 0.33 16 49 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 399.44 15.07 6.02 6.02 Total: -1.00 -34.49 399.44 -10.73 -45.21 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.97 Total: 0.03 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -0.10 Total: 6.29 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.70 Total: -60.29 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -2.39 Total: -1.82 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.49 -10.73 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069871313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.883 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds