Wall clock time and date at job start Tue Mar 31 2020 05:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33323 * 122.71456 * 2 1 4 4 S 1.76161 * 108.09906 * 179.97438 * 3 2 1 5 5 C 1.70964 * 90.35609 * 0.02562 * 4 3 2 6 6 N 1.38611 * 124.94903 * 179.97438 * 5 4 3 7 7 C 1.46954 * 111.00234 * 292.77475 * 6 5 4 8 8 C 1.53044 * 109.36611 * 183.19061 * 7 6 5 9 9 N 1.46963 * 109.36463 * 301.59688 * 8 7 6 10 10 C 1.46900 * 111.00143 * 183.18931 * 9 8 7 11 11 C 1.50699 * 109.47210 * 174.44210 * 10 9 8 12 12 O 1.21281 * 119.99543 * 354.17212 * 11 10 9 13 13 N 1.34773 * 120.00170 * 174.17230 * 11 10 9 14 14 C 1.46497 * 119.99797 * 359.97438 * 13 11 10 15 15 C 1.46502 * 120.00091 * 179.97438 * 13 11 10 16 16 C 1.50700 * 109.46781 * 89.99580 * 15 13 11 17 17 H 1.07994 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.37882 * 119.99982 * 179.97438 * 16 15 13 19 19 N 1.31511 * 120.00165 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99729 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47203 * 89.99682 * 20 18 16 22 22 H 1.48502 * 109.47089 * 210.00035 * 20 18 16 23 23 H 1.48497 * 109.47356 * 329.99993 * 20 18 16 24 24 C 1.46954 * 110.87795 * 59.31999 * 9 8 7 25 25 C 1.46954 * 111.00049 * 56.57450 * 6 5 4 26 26 H 1.08999 * 109.48863 * 296.77739 * 25 6 5 27 27 C 1.53002 * 109.49107 * 56.83884 * 25 6 5 28 28 N 1.29687 * 110.10404 * 0.24227 * 5 4 3 29 29 H 1.09004 * 109.47095 * 90.01701 * 1 2 3 30 30 H 1.08995 * 109.47805 * 210.02215 * 1 2 3 31 31 H 1.09006 * 109.47001 * 330.02798 * 1 2 3 32 32 H 1.08001 * 125.94718 * 0.02562 * 3 2 1 33 33 H 1.08997 * 109.49254 * 63.22114 * 7 6 5 34 34 H 1.09008 * 109.50490 * 303.16638 * 7 6 5 35 35 H 1.08996 * 109.49106 * 181.62940 * 8 7 6 36 36 H 1.08999 * 109.51225 * 61.57365 * 8 7 6 37 37 H 1.08999 * 109.47005 * 294.44510 * 10 9 8 38 38 H 1.09006 * 109.47127 * 54.44117 * 10 9 8 39 39 H 1.09005 * 109.46768 * 90.00421 * 14 13 11 40 40 H 1.09005 * 109.47350 * 209.99822 * 14 13 11 41 41 H 1.08992 * 109.47554 * 330.00079 * 14 13 11 42 42 H 1.08995 * 109.47034 * 210.00077 * 15 13 11 43 43 H 1.09000 * 109.47166 * 330.00650 * 15 13 11 44 44 H 0.97003 * 120.00180 * 180.02562 * 19 18 16 45 45 H 1.09001 * 109.48791 * 60.65030 * 24 9 8 46 46 H 1.09003 * 109.48636 * 180.71487 * 24 9 8 47 47 H 1.09002 * 109.47345 * 183.94685 * 27 25 6 48 48 H 1.08994 * 109.47497 * 303.95581 * 27 25 6 49 49 H 1.09004 * 109.46706 * 63.94900 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2275 1.1217 0.0000 4 16 3.9321 0.6772 0.0007 5 6 3.5110 -0.9797 0.0002 6 7 4.4166 -2.0291 0.0000 7 6 5.1628 -2.0806 -1.2650 8 6 6.0922 -3.2964 -1.2568 9 7 7.0084 -3.2018 -0.1117 10 6 7.9681 -4.3140 -0.1120 11 6 8.9730 -4.1107 0.9926 12 8 8.9623 -3.0858 1.6409 13 7 9.8834 -5.0678 1.2599 14 6 9.8958 -6.3060 0.4771 15 6 10.8606 -4.8699 2.3333 16 6 10.2980 -5.3969 3.6282 17 1 9.3114 -5.8358 3.6494 18 6 11.0432 -5.3199 4.7857 19 7 10.5524 -5.7802 5.9156 20 14 12.7499 -4.5614 4.7489 21 1 12.6493 -3.1033 5.0112 22 1 13.5957 -5.1950 5.7922 23 1 13.3614 -4.7831 3.4140 24 6 6.2622 -3.1504 1.1532 25 6 5.3327 -1.9345 1.1451 26 1 5.9259 -1.0238 1.0618 27 6 4.5247 -1.9008 2.4439 28 7 2.2209 -1.1118 -0.0056 29 1 -0.3633 -0.0003 -1.0277 30 1 -0.3634 -0.8897 0.5141 31 1 -0.3633 0.8903 0.5134 32 1 1.8345 2.1277 0.0004 33 1 5.7541 -1.1716 -1.3756 34 1 4.4634 -2.1630 -2.0970 35 1 6.6678 -3.3204 -2.1821 36 1 5.4993 -4.2073 -1.1738 37 1 7.4370 -5.2522 0.0482 38 1 8.4846 -4.3480 -1.0713 39 1 10.5483 -6.1827 -0.3874 40 1 10.2642 -7.1238 1.0965 41 1 8.8846 -6.5328 0.1397 42 1 11.7790 -5.4048 2.0917 43 1 11.0760 -3.8064 2.4371 44 1 11.0765 -5.7257 6.7300 45 1 5.6709 -4.0594 1.2638 46 1 6.9618 -3.0678 1.9850 47 1 5.1996 -1.7602 3.2882 48 1 3.8120 -1.0770 2.4072 49 1 3.9868 -2.8416 2.5615 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069871313.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:59 Heat of formation + Delta-G solvation = 21.891420 kcal Electronic energy + Delta-G solvation = -29525.777958 eV Core-core repulsion = 25614.751369 eV Total energy + Delta-G solvation = -3911.026588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.167 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60261 -40.80697 -39.82274 -36.94724 -36.32103 -34.68722 -33.76946 -32.52377 -31.07792 -29.57469 -28.51761 -28.29710 -27.28418 -26.16634 -24.27663 -24.00036 -22.91146 -21.42557 -20.42297 -19.97603 -19.13512 -19.03945 -17.99128 -17.53599 -17.19476 -17.03714 -16.70626 -16.35120 -15.97313 -15.60577 -15.55621 -15.16248 -15.16158 -14.92377 -14.55009 -14.28151 -13.94059 -13.90627 -13.74532 -13.61565 -13.37658 -13.33170 -13.20252 -13.18469 -13.00993 -12.81515 -12.64231 -12.43928 -12.34615 -12.24130 -12.17001 -11.98855 -11.96230 -11.73996 -11.05465 -10.82735 -10.54594 -10.43577 -9.79028 -9.62611 -9.38052 -9.32010 -8.33520 -6.38180 -0.37847 0.29924 0.73871 1.32916 1.37004 1.45214 1.70419 1.83493 2.07328 2.23127 2.31285 2.86150 3.01229 3.48038 3.62244 3.72843 3.83898 3.99364 4.02951 4.17967 4.21406 4.24875 4.29187 4.31548 4.43955 4.49262 4.50702 4.55715 4.66957 4.70095 4.76379 4.77946 4.80513 4.83907 4.84620 4.91020 4.96854 4.98143 5.01144 5.05407 5.30235 5.46963 5.50363 5.61705 5.64630 5.83780 6.00549 6.25429 6.63175 6.75424 6.78630 7.23032 7.48866 8.83399 Molecular weight = 352.17amu Principal moments of inertia in cm(-1) A = 0.017733 B = 0.002387 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.587990 B =11726.619284 C =12440.977506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.051 3.949 3 C -0.239 4.239 4 S 0.049 5.951 5 C 0.230 3.770 6 N -0.459 5.459 7 C 0.063 3.937 8 C 0.062 3.938 9 N -0.537 5.537 10 C 0.052 3.948 11 C 0.495 3.505 12 O -0.575 6.575 13 N -0.610 5.610 14 C 0.076 3.924 15 C 0.225 3.775 16 C -0.532 4.532 17 H 0.027 0.973 18 C 0.010 3.990 19 N -0.946 5.946 20 Si 0.947 3.053 21 H -0.277 1.277 22 H -0.276 1.276 23 H -0.237 1.237 24 C 0.066 3.934 25 C 0.102 3.898 26 H 0.054 0.946 27 C -0.140 4.140 28 N -0.481 5.481 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.206 0.794 33 H 0.055 0.945 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.018 0.982 44 H 0.268 0.732 45 H 0.038 0.962 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 9.793 -20.533 27.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.081 4.081 3 C -0.378 4.378 4 S 0.298 5.702 5 C -0.140 4.140 6 N -0.184 5.184 7 C -0.063 4.063 8 C -0.066 4.066 9 N -0.262 5.262 10 C -0.078 4.078 11 C 0.284 3.716 12 O -0.454 6.454 13 N -0.342 5.342 14 C -0.066 4.066 15 C 0.102 3.898 16 C -0.571 4.571 17 H 0.046 0.954 18 C -0.188 4.188 19 N -0.587 5.587 20 Si 0.770 3.230 21 H -0.203 1.203 22 H -0.202 1.202 23 H -0.160 1.160 24 C -0.063 4.063 25 C -0.006 4.006 26 H 0.072 0.928 27 C -0.199 4.199 28 N -0.198 5.198 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.223 0.777 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.158 0.842 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.509 10.235 -20.053 26.784 hybrid contribution -0.195 -0.024 1.092 1.110 sum -14.704 10.211 -18.961 26.077 Atomic orbital electron populations 1.20451 0.84769 1.04172 1.03935 1.20712 0.99565 0.85987 1.01826 1.26943 0.93188 1.05051 1.12575 1.84543 1.09750 1.07504 1.68370 1.25124 0.92642 0.92146 1.04062 1.58556 1.17132 1.37537 1.05157 1.22480 0.95434 0.99324 0.89106 1.22299 0.93220 0.96724 0.94333 1.61804 1.17340 1.44025 1.03006 1.22010 0.93277 0.93528 0.98975 1.21180 0.82260 0.82961 0.85236 1.90611 1.72291 1.29734 1.52776 1.47973 1.33004 1.18641 1.34588 1.21985 1.03775 0.85203 0.95611 1.19300 0.88856 0.96348 0.85275 1.21546 1.02376 1.39540 0.93593 0.95448 1.25855 1.02990 0.95331 0.94650 1.70052 1.40002 1.48292 1.00314 0.85720 0.78985 0.78506 0.79760 1.20317 1.20151 1.16006 1.22183 0.94564 0.96010 0.93515 1.21731 0.91082 0.98329 0.89492 0.92819 1.21790 0.99771 1.02432 0.95869 1.66442 1.04138 1.32716 1.16481 0.89453 0.91285 0.88385 0.77688 0.92699 0.87859 0.86161 0.92893 0.90403 0.84171 0.89922 0.91815 0.89356 0.93292 0.96377 0.92343 0.94431 0.90692 0.91282 0.92688 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.30 71.23 0.73 -0.20 16 2 C 0.05 1.01 6.74 41.40 0.28 1.29 16 3 C -0.24 -4.07 11.10 66.71 0.74 -3.33 16 4 S 0.05 1.04 22.22 -56.49 -1.26 -0.22 16 5 C 0.23 5.75 4.50 179.32 0.81 6.55 16 6 N -0.46 -11.72 4.61 -684.36 -3.16 -14.88 16 7 C 0.06 1.29 5.48 86.31 0.47 1.77 16 8 C 0.06 1.17 5.62 86.31 0.48 1.65 16 9 N -0.54 -14.54 4.49 -900.28 -4.04 -18.58 16 10 C 0.05 1.35 4.19 85.56 0.36 1.71 16 11 C 0.50 19.18 7.24 87.66 0.63 19.82 16 12 O -0.57 -27.95 13.85 -3.03 -0.04 -27.99 16 13 N -0.61 -23.82 2.86 -851.15 -2.43 -26.25 16 14 C 0.08 2.02 10.26 127.77 1.31 3.33 16 15 C 0.22 10.80 4.23 85.63 0.36 11.16 16 16 C -0.53 -31.13 9.94 25.60 0.25 -30.88 16 17 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 18 C 0.01 0.56 5.47 84.66 0.46 1.03 16 19 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 20 Si 0.95 44.53 27.47 68.60 1.88 46.41 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 24 C 0.07 2.10 4.51 86.31 0.39 2.49 16 25 C 0.10 2.92 2.34 44.92 0.10 3.03 16 26 H 0.05 1.66 7.70 -2.39 -0.02 1.64 16 27 C -0.14 -4.00 9.09 71.98 0.65 -3.34 16 28 N -0.48 -12.38 10.59 -189.86 -2.01 -14.39 16 29 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 0.76 8.12 -2.38 -0.02 0.74 16 32 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.05 1.16 7.97 -2.39 -0.02 1.14 16 34 H 0.10 1.78 8.13 -2.38 -0.02 1.76 16 35 H 0.12 1.54 8.11 -2.39 -0.02 1.52 16 36 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 37 H 0.08 1.78 7.08 -2.39 -0.02 1.76 16 38 H 0.14 2.53 8.11 -2.38 -0.02 2.51 16 39 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.86 8.07 -2.38 -0.02 1.84 16 41 H 0.09 1.81 6.28 -2.39 -0.02 1.79 16 42 H 0.05 2.16 7.13 -2.39 -0.02 2.14 16 43 H 0.02 0.94 6.85 -2.39 -0.02 0.92 16 44 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 45 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.07 3.07 5.66 -2.39 -0.01 3.06 16 47 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.05 1.51 6.99 -2.39 -0.02 1.49 16 49 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -80.73 399.44 -1.82 -82.55 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.88 Total: 17.01 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 8.05 Total: 16.08 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -11.34 Total: -133.84 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.04 Total: -27.99 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -1.26 Total: -0.22 kcal Total: -80.73 -1.82 -82.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069871313.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.442 kcal (2) G-P(sol) polarization free energy of solvation -80.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds