Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34694 * 116.99993 * 2 1 4 4 O 1.21445 * 120.00032 * 359.97438 * 3 2 1 5 5 C 1.47913 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.39608 * 120.00462 * 179.97438 * 5 3 2 7 7 C 1.37807 * 119.99304 * 180.02562 * 6 5 3 8 8 C 1.39573 * 120.00637 * 359.97438 * 7 6 5 9 9 C 1.48011 * 119.99412 * 180.02562 * 8 7 6 10 10 O 1.21529 * 120.00124 * 335.52660 * 9 8 7 11 11 N 1.34777 * 119.99446 * 155.79880 * 9 8 7 12 12 C 1.46500 * 120.00225 * 353.78362 * 11 9 8 13 13 C 1.50697 * 109.47046 * 107.78753 * 12 11 9 14 14 H 1.07996 * 120.00176 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99775 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00063 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99709 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47240 * 90.00300 * 17 15 13 19 19 H 1.48500 * 109.46974 * 210.00314 * 17 15 13 20 20 H 1.48503 * 109.47166 * 329.99785 * 17 15 13 21 21 C 1.39838 * 119.99659 * 173.78414 * 11 9 8 22 22 C 1.38917 * 120.06987 * 172.08742 * 21 11 9 23 23 C 1.38082 * 119.92329 * 179.76658 * 22 21 11 24 24 C 1.38313 * 120.07401 * 0.51111 * 23 22 21 25 25 C 1.38262 * 120.14460 * 359.74445 * 24 23 22 26 26 C 1.50701 * 119.96534 * 179.97438 * 25 24 23 27 27 C 1.38135 * 120.07356 * 359.97438 * 25 24 23 28 28 C 1.39573 * 120.00764 * 0.27755 * 8 7 6 29 29 C 1.37806 * 120.00283 * 359.45297 * 28 8 7 30 30 H 1.09003 * 109.47499 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47087 * 300.00054 * 1 2 3 32 32 H 1.09000 * 109.47099 * 60.00066 * 1 2 3 33 33 H 1.07999 * 120.00485 * 359.97438 * 6 5 3 34 34 H 1.08007 * 119.99526 * 179.97438 * 7 6 5 35 35 H 1.09010 * 109.46801 * 227.78825 * 12 11 9 36 36 H 1.08995 * 109.47074 * 347.78201 * 12 11 9 37 37 H 0.96994 * 119.99799 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.03945 * 0.02562 * 22 21 11 39 39 H 1.08004 * 119.96212 * 180.22644 * 23 22 21 40 40 H 1.07990 * 119.92714 * 179.71800 * 24 23 22 41 41 H 1.09001 * 109.47043 * 274.38831 * 26 25 24 42 42 H 1.09005 * 109.46772 * 34.38057 * 26 25 24 43 43 H 1.08994 * 109.47547 * 154.38776 * 26 25 24 44 44 H 1.07993 * 120.03554 * 180.02562 * 27 25 24 45 45 H 1.08001 * 119.99865 * 179.72032 * 28 8 7 46 46 H 1.08001 * 120.00447 * 180.27498 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2187 -0.0005 5 6 3.5406 1.2776 -0.0006 6 6 4.1744 2.5215 -0.0011 7 6 5.5506 2.5934 -0.0022 8 6 6.3107 1.4228 -0.0022 9 6 7.7888 1.5003 -0.0028 10 8 8.3453 2.4886 -0.4392 11 7 8.5176 0.4725 0.4757 12 6 7.8502 -0.6614 1.1201 13 6 7.9118 -1.8626 0.2123 14 1 8.3996 -1.7890 -0.7484 15 6 7.3462 -3.0560 0.6086 16 7 6.7525 -3.1458 1.7787 17 14 7.4231 -4.5452 -0.5164 18 1 8.6567 -5.3201 -0.2282 19 1 6.2337 -5.4033 -0.2837 20 1 7.4400 -4.0960 -1.9318 21 6 9.9108 0.4884 0.3571 22 6 10.6745 -0.4837 0.9908 23 6 12.0498 -0.4679 0.8677 24 6 12.6677 0.5204 0.1231 25 6 11.9108 1.4924 -0.5046 26 6 12.5883 2.5677 -1.3144 27 6 10.5342 1.4791 -0.3902 28 6 5.6772 0.1791 -0.0070 29 6 4.3010 0.1068 -0.0003 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.5863 3.4273 -0.0015 34 1 6.0410 3.5557 -0.0030 35 1 8.3508 -0.8908 2.0609 36 1 6.8086 -0.4066 1.3156 37 1 6.3543 -3.9852 2.0573 38 1 10.1929 -1.2533 1.5758 39 1 12.6439 -1.2255 1.3572 40 1 13.7437 0.5331 0.0321 41 1 12.8854 3.3848 -0.6570 42 1 13.4713 2.1538 -1.8014 43 1 11.8983 2.9423 -2.0705 44 1 9.9436 2.2383 -0.8811 45 1 6.2655 -0.7266 -0.0115 46 1 3.8108 -0.8556 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069917413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = -33.091162 kcal Electronic energy + Delta-G solvation = -30838.221422 eV Core-core repulsion = 26659.355245 eV Total energy + Delta-G solvation = -4178.866176 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78376 -40.31469 -38.67393 -37.55478 -36.40493 -35.74717 -33.04312 -32.09186 -31.66140 -30.89129 -29.38295 -27.97074 -27.58247 -26.38323 -24.77201 -23.34561 -22.89031 -21.89725 -21.39678 -20.38657 -19.19894 -17.90219 -17.11546 -16.97338 -16.83845 -16.39352 -16.35868 -15.85153 -14.95800 -14.74512 -14.67525 -14.47106 -14.33669 -13.87618 -13.61233 -13.49077 -13.36253 -13.22632 -13.04739 -12.67087 -12.64058 -12.32059 -12.28796 -12.06291 -11.99117 -11.72928 -11.47581 -11.34041 -11.10887 -11.01284 -10.86195 -10.64630 -10.58350 -10.33837 -10.24913 -10.03163 -9.31247 -8.96501 -8.91533 -8.84082 -8.50010 -8.15565 -7.23442 -6.44580 -4.56013 0.54208 1.60734 1.84100 1.98567 2.46267 2.66457 3.10883 3.19266 3.21418 3.27900 3.48207 4.05122 4.13493 4.45136 4.68646 4.85050 4.90424 5.00605 5.08056 5.08234 5.17621 5.29103 5.38373 5.41027 5.54608 5.61452 5.68081 5.69500 5.85245 5.97371 6.01597 6.04662 6.15558 6.20048 6.21347 6.30048 6.42049 6.50024 6.57913 6.67719 6.73743 6.86753 6.99724 7.03898 7.11441 7.15030 7.21194 7.49433 7.66428 7.72129 7.76567 7.99661 8.48901 8.62549 9.12891 10.59523 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.003623 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.836772 B = 7725.981662 C =10169.337812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.512 3.488 4 O -0.512 6.512 5 C -0.113 4.113 6 C -0.080 4.080 7 C -0.078 4.078 8 C -0.101 4.101 9 C 0.553 3.447 10 O -0.535 6.535 11 N -0.526 5.526 12 C 0.201 3.799 13 C -0.548 4.548 14 H 0.069 0.931 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.282 1.282 20 H -0.270 1.270 21 C 0.174 3.826 22 C -0.139 4.139 23 C -0.103 4.103 24 C -0.158 4.158 25 C -0.080 4.080 26 C -0.106 4.106 27 C -0.171 4.171 28 C -0.104 4.104 29 C -0.072 4.072 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.271 0.729 38 H 0.138 0.862 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.171 0.829 45 H 0.207 0.793 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 5.000 -2.029 5.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 C 0.357 3.643 4 O -0.401 6.401 5 C -0.114 4.114 6 C -0.098 4.098 7 C -0.097 4.097 8 C -0.104 4.104 9 C 0.344 3.656 10 O -0.416 6.416 11 N -0.244 5.244 12 C 0.083 3.917 13 C -0.586 4.586 14 H 0.087 0.913 15 C -0.133 4.133 16 N -0.512 5.512 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.194 1.194 21 C 0.079 3.921 22 C -0.159 4.159 23 C -0.122 4.122 24 C -0.177 4.177 25 C -0.081 4.081 26 C -0.163 4.163 27 C -0.191 4.191 28 C -0.121 4.121 29 C -0.090 4.090 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.156 0.844 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.156 0.844 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.188 0.812 45 H 0.223 0.777 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.546 5.637 -2.091 6.529 hybrid contribution -0.270 -1.099 -0.345 1.183 sum -2.816 4.537 -2.436 5.870 Atomic orbital electron populations 1.23274 0.76196 1.03776 1.02447 1.86594 1.23364 1.32580 1.84111 1.21390 0.89302 0.81317 0.72253 1.90794 1.66916 1.36099 1.46305 1.19304 0.88589 0.95470 1.08050 1.21024 0.94098 0.96502 0.98152 1.21112 0.92698 0.98226 0.97685 1.20163 0.92909 0.94667 1.02695 1.18488 0.87070 0.82149 0.77860 1.90421 1.71331 1.32126 1.47716 1.45834 1.04470 1.20682 1.53394 1.20526 0.95038 0.82187 0.93972 1.21320 1.38539 0.94518 1.04188 0.91254 1.24965 0.94247 0.98790 0.95250 1.69918 1.34884 1.27311 1.19087 0.86465 0.78053 0.81968 0.81074 1.20152 1.20725 1.19402 1.17910 0.82380 0.95704 0.96127 1.21058 0.93445 0.99667 1.01752 1.20837 0.94044 0.98240 0.99085 1.20838 0.98884 0.96573 1.01362 1.19752 0.93523 0.96499 0.98314 1.20697 0.99911 0.96812 0.98890 1.22314 0.94456 1.01245 1.01058 1.23488 0.95462 1.00972 0.92162 1.21535 0.93936 0.97723 0.95850 0.87948 0.91882 0.91928 0.84471 0.84359 0.93991 0.90931 0.91878 0.84449 0.86456 0.87153 0.91753 0.92131 0.91830 0.81225 0.77669 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -4.80 9.80 -40.48 -0.40 -5.20 16 3 C 0.51 7.83 7.90 34.69 0.27 8.10 16 4 O -0.51 -8.49 16.12 -19.22 -0.31 -8.80 16 5 C -0.11 -1.77 5.88 -104.91 -0.62 -2.39 16 6 C -0.08 -1.18 9.58 -39.23 -0.38 -1.56 16 7 C -0.08 -1.24 9.57 -39.24 -0.38 -1.61 16 8 C -0.10 -1.85 5.54 -104.89 -0.58 -2.43 16 9 C 0.55 11.16 7.40 -12.25 -0.09 11.07 16 10 O -0.53 -11.12 13.10 5.34 0.07 -11.05 16 11 N -0.53 -10.97 2.76 -115.74 -0.32 -11.29 16 12 C 0.20 4.39 4.02 -5.20 -0.02 4.37 16 13 C -0.55 -12.73 6.49 -34.44 -0.22 -12.95 16 14 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 15 C 0.07 1.73 5.43 -17.82 -0.10 1.63 16 16 N -0.88 -21.36 13.29 55.43 0.74 -20.63 16 17 Si 0.90 18.82 29.54 -169.99 -5.02 13.80 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 C 0.17 3.56 6.30 -83.72 -0.53 3.03 16 22 C -0.14 -2.68 8.93 -39.39 -0.35 -3.03 16 23 C -0.10 -1.72 10.04 -39.61 -0.40 -2.12 16 24 C -0.16 -2.47 9.71 -39.54 -0.38 -2.86 16 25 C -0.08 -1.33 5.88 -104.65 -0.62 -1.95 16 26 C -0.11 -1.38 10.01 36.01 0.36 -1.02 16 27 C -0.17 -3.30 8.61 -39.39 -0.34 -3.64 16 28 C -0.10 -1.92 7.44 -39.24 -0.29 -2.21 16 29 C -0.07 -1.20 9.60 -39.23 -0.38 -1.57 16 30 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.14 1.82 7.64 -52.49 -0.40 1.42 16 34 H 0.14 1.99 7.83 -52.48 -0.41 1.58 16 35 H 0.04 0.97 6.93 -51.92 -0.36 0.61 16 36 H 0.07 1.59 4.17 -51.93 -0.22 1.38 16 37 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 38 H 0.14 2.78 6.17 -52.49 -0.32 2.46 16 39 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 40 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 43 H 0.06 0.81 8.05 -51.93 -0.42 0.40 16 44 H 0.17 3.42 4.72 -55.21 -0.26 3.16 16 45 H 0.21 4.28 3.21 -52.49 -0.17 4.11 16 46 H 0.14 2.22 7.60 -52.49 -0.40 1.82 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -26.74 384.06 -8.88 -35.62 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.46 Total: 11.45 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -3.96 Total: -9.70 kcal Atomic # 7 Polarization: -32.33 SS G_CDS: 0.42 Total: -31.91 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.64 Total: -25.04 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -26.74 -8.88 -35.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069917413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.528 kcal (2) G-P(sol) polarization free energy of solvation -26.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds