Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34694 * 116.99993 * 2 1 4 4 O 1.21445 * 120.00032 * 359.97438 * 3 2 1 5 5 C 1.47913 * 120.00170 * 180.02562 * 3 2 1 6 6 C 1.39608 * 120.00462 * 179.97438 * 5 3 2 7 7 C 1.37807 * 119.99304 * 180.02562 * 6 5 3 8 8 C 1.39573 * 120.00637 * 359.97438 * 7 6 5 9 9 C 1.48011 * 119.99412 * 180.02562 * 8 7 6 10 10 O 1.21529 * 120.00124 * 335.52660 * 9 8 7 11 11 N 1.34777 * 119.99446 * 155.79880 * 9 8 7 12 12 C 1.46500 * 120.00225 * 353.78362 * 11 9 8 13 13 C 1.50697 * 109.47046 * 107.78753 * 12 11 9 14 14 H 1.07996 * 120.00176 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99775 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00063 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99709 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47240 * 90.00300 * 17 15 13 19 19 H 1.48500 * 109.46974 * 210.00314 * 17 15 13 20 20 H 1.48503 * 109.47166 * 329.99785 * 17 15 13 21 21 C 1.39838 * 119.99659 * 173.78414 * 11 9 8 22 22 C 1.38917 * 120.06987 * 172.08742 * 21 11 9 23 23 C 1.38082 * 119.92329 * 179.76658 * 22 21 11 24 24 C 1.38313 * 120.07401 * 0.51111 * 23 22 21 25 25 C 1.38262 * 120.14460 * 359.74445 * 24 23 22 26 26 C 1.50701 * 119.96534 * 179.97438 * 25 24 23 27 27 C 1.38135 * 120.07356 * 359.97438 * 25 24 23 28 28 C 1.39573 * 120.00764 * 0.27755 * 8 7 6 29 29 C 1.37806 * 120.00283 * 359.45297 * 28 8 7 30 30 H 1.09003 * 109.47499 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47087 * 300.00054 * 1 2 3 32 32 H 1.09000 * 109.47099 * 60.00066 * 1 2 3 33 33 H 1.07999 * 120.00485 * 359.97438 * 6 5 3 34 34 H 1.08007 * 119.99526 * 179.97438 * 7 6 5 35 35 H 1.09010 * 109.46801 * 227.78825 * 12 11 9 36 36 H 1.08995 * 109.47074 * 347.78201 * 12 11 9 37 37 H 0.96994 * 119.99799 * 179.97438 * 16 15 13 38 38 H 1.08002 * 120.03945 * 0.02562 * 22 21 11 39 39 H 1.08004 * 119.96212 * 180.22644 * 23 22 21 40 40 H 1.07990 * 119.92714 * 179.71800 * 24 23 22 41 41 H 1.09001 * 109.47043 * 274.38831 * 26 25 24 42 42 H 1.09005 * 109.46772 * 34.38057 * 26 25 24 43 43 H 1.08994 * 109.47547 * 154.38776 * 26 25 24 44 44 H 1.07993 * 120.03554 * 180.02562 * 27 25 24 45 45 H 1.08001 * 119.99865 * 179.72032 * 28 8 7 46 46 H 1.08001 * 120.00447 * 180.27498 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4020 2.2187 -0.0005 5 6 3.5406 1.2776 -0.0006 6 6 4.1744 2.5215 -0.0011 7 6 5.5506 2.5934 -0.0022 8 6 6.3107 1.4228 -0.0022 9 6 7.7888 1.5003 -0.0028 10 8 8.3453 2.4886 -0.4392 11 7 8.5176 0.4725 0.4757 12 6 7.8502 -0.6614 1.1201 13 6 7.9118 -1.8626 0.2123 14 1 8.3996 -1.7890 -0.7484 15 6 7.3462 -3.0560 0.6086 16 7 6.7525 -3.1458 1.7787 17 14 7.4231 -4.5452 -0.5164 18 1 8.6567 -5.3201 -0.2282 19 1 6.2337 -5.4033 -0.2837 20 1 7.4400 -4.0960 -1.9318 21 6 9.9108 0.4884 0.3571 22 6 10.6745 -0.4837 0.9908 23 6 12.0498 -0.4679 0.8677 24 6 12.6677 0.5204 0.1231 25 6 11.9108 1.4924 -0.5046 26 6 12.5883 2.5677 -1.3144 27 6 10.5342 1.4791 -0.3902 28 6 5.6772 0.1791 -0.0070 29 6 4.3010 0.1068 -0.0003 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.5863 3.4273 -0.0015 34 1 6.0410 3.5557 -0.0030 35 1 8.3508 -0.8908 2.0609 36 1 6.8086 -0.4066 1.3156 37 1 6.3543 -3.9852 2.0573 38 1 10.1929 -1.2533 1.5758 39 1 12.6439 -1.2255 1.3572 40 1 13.7437 0.5331 0.0321 41 1 12.8854 3.3848 -0.6570 42 1 13.4713 2.1538 -1.8014 43 1 11.8983 2.9423 -2.0705 44 1 9.9436 2.2383 -0.8811 45 1 6.2655 -0.7266 -0.0115 46 1 3.8108 -0.8556 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069917413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = -43.694860 kcal Electronic energy + Delta-G solvation = -30838.681232 eV Core-core repulsion = 26659.355245 eV Total energy + Delta-G solvation = -4179.325987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.22628 -41.55617 -40.00235 -38.94583 -37.58170 -37.31034 -34.78462 -33.43876 -32.98410 -32.23091 -30.81126 -29.48048 -28.68052 -27.64128 -26.08229 -25.07751 -24.22282 -23.26668 -22.67654 -21.69608 -20.66692 -19.10547 -18.78517 -18.34172 -18.28771 -17.89823 -17.43554 -17.23565 -16.58897 -16.32032 -16.04374 -15.83028 -15.70361 -15.08736 -14.99567 -14.60546 -14.59031 -14.48503 -14.40861 -14.31625 -14.03278 -13.67719 -13.51553 -13.23931 -13.15188 -13.01364 -12.91342 -12.87314 -12.62782 -12.46812 -12.18588 -11.92706 -11.87799 -11.84616 -11.80932 -11.54163 -10.89969 -10.70478 -10.43535 -10.20735 -9.92781 -9.53354 -8.75460 -8.25812 -6.43057 -0.79520 0.29533 0.44164 0.58646 1.16472 1.41489 1.45954 1.53680 1.60556 1.83452 1.96228 2.37922 2.70468 3.01537 3.03440 3.30785 3.64565 3.80879 3.91419 4.06118 4.14128 4.22438 4.26430 4.29203 4.33747 4.39898 4.49519 4.60222 4.65242 4.68005 4.70296 4.74086 4.88477 4.96271 4.99385 5.06554 5.09204 5.12832 5.19361 5.26812 5.30463 5.35582 5.51589 5.62423 5.63973 5.72104 5.75823 5.79762 5.90263 6.31709 6.38981 6.56651 6.68882 7.00184 7.27837 8.77128 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.003623 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.836772 B = 7725.981662 C =10169.337812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.516 3.484 4 O -0.525 6.525 5 C -0.111 4.111 6 C -0.067 4.067 7 C -0.071 4.071 8 C -0.116 4.116 9 C 0.546 3.454 10 O -0.547 6.547 11 N -0.532 5.532 12 C 0.217 3.783 13 C -0.545 4.545 14 H 0.052 0.948 15 C 0.042 3.958 16 N -0.900 5.900 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.273 1.273 21 C 0.144 3.856 22 C -0.161 4.161 23 C -0.100 4.100 24 C -0.150 4.150 25 C -0.080 4.080 26 C -0.104 4.104 27 C -0.191 4.191 28 C -0.118 4.118 29 C -0.070 4.070 30 H 0.132 0.868 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.020 0.980 36 H 0.073 0.927 37 H 0.274 0.726 38 H 0.117 0.883 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.159 0.841 45 H 0.183 0.817 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.023 5.415 -2.744 6.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.362 3.638 4 O -0.416 6.416 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.090 4.090 8 C -0.119 4.119 9 C 0.338 3.662 10 O -0.429 6.429 11 N -0.250 5.250 12 C 0.098 3.902 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.162 4.162 16 N -0.537 5.537 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.197 1.197 21 C 0.050 3.950 22 C -0.181 4.181 23 C -0.118 4.118 24 C -0.168 4.168 25 C -0.081 4.081 26 C -0.161 4.161 27 C -0.211 4.211 28 C -0.135 4.135 29 C -0.088 4.088 30 H 0.150 0.850 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.178 0.822 34 H 0.171 0.829 35 H 0.038 0.962 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.135 0.865 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.175 0.825 45 H 0.199 0.801 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.175 6.044 -2.809 7.011 hybrid contribution -0.385 -1.188 -0.131 1.256 sum -2.560 4.856 -2.940 6.227 Atomic orbital electron populations 1.23643 0.73879 1.05980 1.02971 1.86580 1.25647 1.31604 1.83537 1.21206 0.88936 0.81647 0.71977 1.90787 1.67099 1.36602 1.47107 1.19442 0.89254 0.95366 1.07204 1.21260 0.93694 0.97118 0.96399 1.21262 0.93024 0.97917 0.96762 1.20153 0.91956 0.95572 1.04256 1.18833 0.87938 0.81847 0.77546 1.90403 1.71829 1.32342 1.48313 1.45829 1.05048 1.20536 1.53634 1.20232 0.94747 0.82366 0.92831 1.21254 1.38145 0.95322 1.03504 0.92984 1.25478 0.93969 1.00563 0.96186 1.69981 1.35665 1.27891 1.20144 0.85686 0.78061 0.79492 0.79375 1.20226 1.19934 1.19739 1.18248 0.82287 0.96944 0.97553 1.21046 0.94889 0.99532 1.02661 1.21197 0.92969 0.99012 0.98643 1.21259 1.00746 0.95184 0.99661 1.20218 0.92567 0.97406 0.97876 1.20763 1.00412 0.96170 0.98713 1.22324 0.95917 1.01079 1.01756 1.23159 0.96185 1.00186 0.94008 1.21517 0.93093 0.98561 0.95647 0.85008 0.91468 0.91322 0.82158 0.82855 0.96221 0.90933 0.91686 0.86486 0.83704 0.83249 0.90182 0.89590 0.92109 0.82476 0.80053 0.83399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.36 -9.27 9.80 -56.03 -0.55 -9.82 16 3 C 0.52 15.08 7.90 70.39 0.56 15.63 16 4 O -0.52 -16.51 16.12 20.01 0.32 -16.18 16 5 C -0.11 -3.39 5.88 -20.05 -0.12 -3.51 16 6 C -0.07 -1.89 9.58 22.50 0.22 -1.68 16 7 C -0.07 -2.21 9.57 22.49 0.22 -2.00 16 8 C -0.12 -4.37 5.54 -20.04 -0.11 -4.48 16 9 C 0.55 23.06 7.40 86.84 0.64 23.70 16 10 O -0.55 -23.53 13.10 -3.81 -0.05 -23.58 16 11 N -0.53 -23.52 2.76 -638.37 -1.76 -25.28 16 12 C 0.22 10.09 4.02 85.63 0.34 10.43 16 13 C -0.54 -26.53 6.49 25.60 0.17 -26.36 16 14 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 15 C 0.04 2.01 5.43 84.66 0.46 2.47 16 16 N -0.90 -45.05 13.29 21.45 0.28 -44.77 16 17 Si 0.95 39.14 29.54 68.60 2.03 41.17 16 18 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 C 0.14 6.16 6.30 38.18 0.24 6.40 16 22 C -0.16 -6.43 8.93 22.40 0.20 -6.23 16 23 C -0.10 -3.21 10.04 22.25 0.22 -2.99 16 24 C -0.15 -4.32 9.71 22.29 0.22 -4.11 16 25 C -0.08 -2.54 5.88 -19.88 -0.12 -2.66 16 26 C -0.10 -2.43 10.01 71.24 0.71 -1.72 16 27 C -0.19 -7.51 8.61 22.40 0.19 -7.32 16 28 C -0.12 -4.53 7.44 22.49 0.17 -4.36 16 29 C -0.07 -2.34 9.60 22.50 0.22 -2.12 16 30 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.16 3.85 7.64 -2.91 -0.02 3.83 16 34 H 0.15 4.28 7.83 -2.91 -0.02 4.26 16 35 H 0.02 0.99 6.93 -2.38 -0.02 0.97 16 36 H 0.07 3.39 4.17 -2.39 -0.01 3.38 16 37 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 38 H 0.12 5.06 6.17 -2.91 -0.02 5.05 16 39 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.15 3.16 8.06 -2.92 -0.02 3.14 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 1.59 8.11 -2.38 -0.02 1.57 16 43 H 0.06 1.46 8.05 -2.39 -0.02 1.44 16 44 H 0.16 6.55 4.72 -45.92 -0.22 6.34 16 45 H 0.18 7.98 3.21 -2.91 -0.01 7.97 16 46 H 0.15 4.66 7.60 -2.91 -0.02 4.64 16 Total: -1.00 -59.36 384.06 6.72 -52.64 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.83 Total: 35.01 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.62 Total: -9.19 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -1.47 Total: -70.04 kcal Atomic # 8 Polarization: -49.30 SS G_CDS: -0.28 Total: -49.57 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 2.03 Total: 41.17 kcal Total: -59.36 6.72 -52.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069917413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.941 kcal (2) G-P(sol) polarization free energy of solvation -59.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds