Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99847 * 2 1 4 4 H 1.48502 * 109.47002 * 270.00418 * 3 2 1 5 5 H 1.48495 * 109.46839 * 30.00523 * 3 2 1 6 6 H 1.48500 * 109.46856 * 150.00763 * 3 2 1 7 7 C 1.37874 * 120.00189 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00043 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00209 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47152 * 179.97438 * 9 7 2 11 11 C 1.46495 * 120.00212 * 273.17027 * 10 9 7 12 12 C 1.50700 * 109.47330 * 270.00539 * 11 10 9 13 13 C 1.38224 * 119.62209 * 94.72574 * 12 11 10 14 14 C 1.38624 * 119.16322 * 179.75764 * 13 12 11 15 15 C 1.38676 * 118.42109 * 0.50108 * 14 13 12 16 16 C 1.38179 * 119.16238 * 359.74062 * 15 14 13 17 17 N 1.31859 * 119.61879 * 274.99996 * 12 11 10 18 18 C 1.34777 * 119.99681 * 93.17576 * 10 9 7 19 19 O 1.21291 * 119.99613 * 184.93124 * 18 10 9 20 20 C 1.50700 * 120.00383 * 4.92843 * 18 10 9 21 21 H 1.08999 * 109.69056 * 32.48030 * 20 18 10 22 22 C 1.53398 * 109.69695 * 271.88413 * 20 18 10 23 23 O 1.42825 * 108.37852 * 175.60562 * 22 20 18 24 24 C 1.35840 * 117.91660 * 48.99270 * 23 22 20 25 25 C 1.39156 * 118.49934 * 162.60973 * 24 23 22 26 26 C 1.37965 * 120.21298 * 179.80999 * 25 24 23 27 27 C 1.38295 * 119.95883 * 0.28622 * 26 25 24 28 28 C 1.38102 * 119.98477 * 0.10544 * 27 26 25 29 29 C 1.38376 * 121.80674 * 343.15880 * 24 23 22 30 30 C 1.50770 * 121.39987 * 0.08108 * 29 24 23 31 31 H 0.96996 * 120.00074 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.46899 * 59.99598 * 9 7 2 33 33 H 1.09007 * 109.47003 * 299.99966 * 9 7 2 34 34 H 1.09004 * 109.46856 * 30.00022 * 11 10 9 35 35 H 1.08999 * 109.47480 * 150.00064 * 11 10 9 36 36 H 1.08007 * 120.42157 * 359.97438 * 13 12 11 37 37 H 1.08004 * 120.79129 * 180.26549 * 14 13 12 38 38 H 1.08002 * 120.42070 * 179.70685 * 15 14 13 39 39 H 1.07998 * 119.61802 * 179.97438 * 16 15 14 40 40 H 1.09000 * 109.68565 * 295.33443 * 22 20 18 41 41 H 1.09008 * 109.68143 * 55.84696 * 22 20 18 42 42 H 1.07995 * 119.89061 * 0.07849 * 25 24 23 43 43 H 1.07997 * 120.02325 * 180.26371 * 26 25 24 44 44 H 1.07995 * 120.00831 * 180.08398 * 27 26 25 45 45 H 1.08002 * 119.84309 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.43334 * 102.46361 * 30 29 24 47 47 H 1.09000 * 109.43128 * 222.32176 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0018 11 6 2.7316 -4.1232 -1.2691 12 6 1.8345 -5.2201 -1.7820 13 6 0.8373 -4.9184 -2.6904 14 6 0.0208 -5.9356 -3.1597 15 6 0.2319 -7.2224 -2.6877 16 6 1.2455 -7.4472 -1.7758 17 7 2.0063 -6.4557 -1.3548 18 6 2.5929 -4.1673 1.1631 19 8 3.4474 -5.0281 1.1690 20 6 1.9670 -3.7180 2.4583 21 1 0.9287 -3.4346 2.2856 22 6 2.7440 -2.5206 3.0201 23 8 2.0690 -2.0540 4.1890 24 6 1.7199 -2.9696 5.1299 25 6 1.4056 -2.5204 6.4090 26 6 1.0426 -3.4192 7.3907 27 6 0.9961 -4.7717 7.1058 28 6 1.3151 -5.2217 5.8397 29 6 1.6813 -4.3242 4.8504 30 6 2.0280 -4.8542 3.4821 31 1 -0.4850 0.8400 0.0004 32 1 0.6241 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8897 34 1 2.7701 -3.3144 -1.9989 35 1 3.7351 -4.5184 -1.1116 36 1 0.6983 -3.9036 -3.0329 37 1 -0.7637 -5.7303 -3.8731 38 1 -0.3883 -8.0384 -3.0281 39 1 1.4161 -8.4464 -1.4031 40 1 3.7568 -2.8292 3.2794 41 1 2.7820 -1.7255 2.2753 42 1 1.4419 -1.4645 6.6326 43 1 0.7952 -3.0669 8.3811 44 1 0.7107 -5.4758 7.8733 45 1 1.2784 -6.2785 5.6199 46 1 3.0343 -5.2729 3.4997 47 1 1.3171 -5.6321 3.2037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069921065.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = -12.461790 kcal Electronic energy + Delta-G solvation = -31315.108444 eV Core-core repulsion = 27234.855486 eV Total energy + Delta-G solvation = -4080.252958 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.64781 -40.01271 -38.83337 -37.12682 -35.26935 -33.89819 -32.87374 -32.23076 -31.53853 -30.36376 -30.01749 -27.68732 -26.40514 -25.40356 -23.86697 -23.40470 -22.86048 -22.37485 -21.82222 -20.07341 -18.27532 -17.58328 -16.97053 -16.83032 -16.32331 -16.14129 -15.97079 -15.40802 -15.26966 -15.23846 -14.74445 -14.53949 -14.25312 -13.84948 -13.63379 -13.41113 -13.25944 -13.08634 -12.93496 -12.83823 -12.54875 -12.50276 -12.32291 -11.74947 -11.57751 -11.55686 -11.42322 -11.15333 -11.01038 -10.88209 -10.73134 -10.35601 -10.21636 -10.20170 -9.86668 -9.69608 -9.20652 -9.16529 -8.79250 -8.61471 -8.59074 -7.92105 -7.84204 -6.25506 -4.33977 1.25091 1.46535 1.47558 1.60716 3.19679 3.22260 3.28473 3.31450 3.57133 3.73665 3.94794 4.19187 4.29008 4.55484 4.87316 4.90687 4.95803 4.99157 5.06509 5.08473 5.15959 5.20678 5.22321 5.31141 5.38541 5.43937 5.60543 5.66996 5.74038 5.77069 5.86810 5.90846 5.99099 6.07610 6.14620 6.19311 6.31642 6.35469 6.35994 6.37351 6.48148 6.62717 6.65908 6.68772 6.87777 6.95605 7.11278 7.40757 7.67748 7.76970 7.95560 8.19515 8.28774 8.69875 8.91588 9.34606 10.80992 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.007227 B = 0.004500 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3873.534520 B = 6220.910433 C = 9217.459540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.071 3.929 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.234 3.766 10 N -0.589 5.589 11 C 0.167 3.833 12 C 0.119 3.881 13 C -0.155 4.155 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.092 3.908 17 N -0.461 5.461 18 C 0.527 3.473 19 O -0.549 6.549 20 C -0.139 4.139 21 H 0.109 0.891 22 C 0.073 3.927 23 O -0.304 6.304 24 C 0.137 3.863 25 C -0.153 4.153 26 C -0.093 4.093 27 C -0.160 4.160 28 C -0.085 4.085 29 C -0.154 4.154 30 C -0.063 4.063 31 H 0.266 0.734 32 H 0.035 0.965 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.061 0.939 41 H 0.141 0.859 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.660 -9.754 3.122 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.114 3.886 10 N -0.319 5.319 11 C 0.043 3.957 12 C -0.020 4.020 13 C -0.175 4.175 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.066 4.066 17 N -0.170 5.170 18 C 0.314 3.686 19 O -0.427 6.427 20 C -0.160 4.160 21 H 0.127 0.873 22 C -0.002 4.002 23 O -0.217 6.217 24 C 0.091 3.909 25 C -0.171 4.171 26 C -0.111 4.111 27 C -0.179 4.179 28 C -0.103 4.103 29 C -0.155 4.155 30 C -0.100 4.100 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.110 0.890 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.167 0.833 40 H 0.079 0.921 41 H 0.158 0.842 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.109 0.891 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.258 -10.012 3.713 10.681 hybrid contribution -0.621 0.942 -0.869 1.424 sum -0.363 -9.070 2.844 9.513 Atomic orbital electron populations 1.69910 1.06065 1.27502 1.48741 1.24920 0.94803 0.99253 0.94370 0.86549 0.80017 0.83031 0.78271 1.20517 1.20983 1.19561 1.21423 0.93585 0.90229 1.52992 0.91800 1.19552 0.87656 0.82498 0.98858 1.48139 1.45748 1.34334 1.03705 1.20132 0.96105 0.92675 0.86813 1.21896 0.94980 0.92574 0.92536 1.22130 0.96049 1.00727 0.98604 1.21556 0.98126 0.92775 0.98206 1.22094 1.00190 0.97780 1.00079 1.22752 0.91606 0.98250 0.93980 1.67632 1.26386 0.99942 1.23047 1.19989 0.82244 0.81324 0.84998 1.90633 1.32293 1.32700 1.87101 1.21890 1.03111 0.97252 0.93774 0.87322 1.23153 0.93206 0.98245 0.85557 1.86092 1.72700 1.33908 1.29018 1.18877 0.95113 0.87985 0.88942 1.20603 1.05405 1.00626 0.90482 1.20855 0.98717 0.93029 0.98513 1.20926 1.04374 0.95701 0.96877 1.20860 0.97900 0.98994 0.92558 1.19910 1.05948 0.92663 0.97006 1.20371 1.03480 0.96926 0.89211 0.92376 0.94722 0.94052 0.88519 0.89001 0.84398 0.85104 0.85317 0.83284 0.92069 0.84170 0.85367 0.85834 0.86278 0.86069 0.89089 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.40 13.29 55.43 0.74 -22.67 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.08 7.54 -34.44 -0.26 -13.34 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.23 5.22 5.04 -5.19 -0.03 5.20 16 10 N -0.59 -11.87 2.44 -176.43 -0.43 -12.30 16 11 C 0.17 3.04 5.77 -5.20 -0.03 3.01 16 12 C 0.12 2.04 6.36 -82.59 -0.53 1.52 16 13 C -0.15 -2.32 9.72 -39.44 -0.38 -2.70 16 14 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 15 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 16 C 0.09 1.29 11.18 -17.55 -0.20 1.09 16 17 N -0.46 -8.07 10.27 -9.47 -0.10 -8.17 16 18 C 0.53 10.73 6.78 -10.99 -0.07 10.66 16 19 O -0.55 -12.06 15.44 5.55 0.09 -11.98 16 20 C -0.14 -2.61 2.02 -91.53 -0.19 -2.80 16 21 H 0.11 2.18 6.08 -51.93 -0.32 1.87 16 22 C 0.07 1.38 6.30 37.36 0.24 1.62 16 23 O -0.30 -5.81 10.27 -19.24 -0.20 -6.00 16 24 C 0.14 2.35 6.47 -39.19 -0.25 2.09 16 25 C -0.15 -2.26 9.94 -39.34 -0.39 -2.65 16 26 C -0.09 -1.16 10.04 -39.66 -0.40 -1.56 16 27 C -0.16 -1.97 10.04 -39.61 -0.40 -2.36 16 28 C -0.08 -1.16 9.67 -39.53 -0.38 -1.54 16 29 C -0.15 -2.49 5.75 -104.44 -0.60 -3.09 16 30 C -0.06 -1.05 4.97 -27.82 -0.14 -1.19 16 31 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 32 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.04 0.99 5.66 -51.93 -0.29 0.69 16 34 H 0.10 1.63 7.97 -51.93 -0.41 1.22 16 35 H 0.09 1.73 7.36 -51.93 -0.38 1.35 16 36 H 0.14 1.96 8.06 -52.48 -0.42 1.54 16 37 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.14 2.90 6.12 -51.92 -0.32 2.58 16 42 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.09 1.57 7.42 -51.93 -0.39 1.18 16 47 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -29.36 391.48 -10.23 -39.59 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.30 Total: 9.23 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -4.90 Total: -8.36 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.21 Total: -43.14 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.11 Total: -17.98 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.36 -10.23 -39.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921065.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.126 kcal (2) G-P(sol) polarization free energy of solvation -29.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds