Wall clock time and date at job start Tue Mar 31 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99775 * 2 1 4 4 H 1.48493 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47261 * 299.99774 * 3 2 1 6 6 H 1.48504 * 109.47030 * 59.99871 * 3 2 1 7 7 C 1.37875 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00249 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99580 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47100 * 180.02562 * 9 7 2 11 11 C 1.46496 * 120.00243 * 95.14153 * 10 9 7 12 12 C 1.50691 * 109.47266 * 270.00411 * 11 10 9 13 13 C 1.38236 * 119.62034 * 95.02064 * 12 11 10 14 14 C 1.38632 * 119.15974 * 179.97438 * 13 12 11 15 15 C 1.38676 * 118.42192 * 359.97438 * 14 13 12 16 16 C 1.38182 * 119.16296 * 359.97438 * 15 14 13 17 17 N 1.31857 * 119.61713 * 274.99827 * 12 11 10 18 18 C 1.34776 * 119.99771 * 275.14242 * 10 9 7 19 19 O 1.21282 * 120.00134 * 174.78040 * 18 10 9 20 20 C 1.50709 * 120.00113 * 354.78691 * 18 10 9 21 21 H 1.09000 * 109.69381 * 34.14231 * 20 18 10 22 22 C 1.53404 * 109.69630 * 154.70344 * 20 18 10 23 23 O 1.42832 * 108.37574 * 184.41945 * 22 20 18 24 24 C 1.35851 * 117.85907 * 310.82112 * 23 22 20 25 25 C 1.39143 * 118.50199 * 197.17254 * 24 23 22 26 26 C 1.37969 * 120.21706 * 180.15750 * 25 24 23 27 27 C 1.38289 * 119.95598 * 0.03834 * 26 25 24 28 28 C 1.38101 * 119.98471 * 359.92962 * 27 26 25 29 29 C 1.38374 * 121.80279 * 17.22801 * 24 23 22 30 30 C 1.50771 * 121.40524 * 359.48170 * 29 24 23 31 31 H 0.97000 * 119.99988 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47241 * 59.99965 * 9 7 2 33 33 H 1.09002 * 109.47507 * 299.99769 * 9 7 2 34 34 H 1.09002 * 109.47295 * 150.00040 * 11 10 9 35 35 H 1.09007 * 109.46617 * 30.00141 * 11 10 9 36 36 H 1.07992 * 120.41684 * 359.95275 * 13 12 11 37 37 H 1.07996 * 120.78281 * 179.97438 * 14 13 12 38 38 H 1.07990 * 120.41602 * 180.27561 * 15 14 13 39 39 H 1.07995 * 119.61504 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.68553 * 304.13635 * 22 20 18 41 41 H 1.08998 * 109.68772 * 64.69577 * 22 20 18 42 42 H 1.08004 * 119.89402 * 0.17721 * 25 24 23 43 43 H 1.08002 * 120.02503 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.00681 * 179.97438 * 27 26 25 45 45 H 1.08007 * 119.84475 * 179.97438 * 28 27 26 46 46 H 1.09001 * 109.43432 * 257.79299 * 30 29 24 47 47 H 1.09000 * 109.43126 * 137.92135 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 2.5919 -4.2427 1.2659 12 6 3.8005 -3.5391 1.8272 13 6 3.6332 -2.5321 2.7594 14 6 4.7517 -1.8916 3.2698 15 6 6.0023 -2.2900 2.8220 16 6 6.0915 -3.3053 1.8889 17 7 5.0054 -3.8914 1.4238 18 6 2.7215 -4.0573 -1.1602 19 8 3.5797 -4.9143 -1.1528 20 6 2.2348 -3.4896 -2.4686 21 1 1.9872 -2.4356 -2.3423 22 6 3.3268 -3.6400 -3.5355 23 8 2.8779 -3.0024 -4.7323 24 6 1.6315 -3.3021 -5.1821 25 6 1.3094 -2.9940 -6.5002 26 6 0.0528 -3.2799 -6.9929 27 6 -0.8909 -3.8739 -6.1750 28 6 -0.5745 -4.1817 -4.8665 29 6 0.6861 -3.8992 -4.3670 30 6 0.9969 -4.2589 -2.9362 31 1 -0.4850 0.8400 -0.0004 32 1 0.6248 -2.5570 -0.8897 33 1 0.6242 -2.5567 0.8903 34 1 2.8308 -5.2917 1.0907 35 1 1.7677 -4.1714 1.9758 36 1 2.6438 -2.2478 3.0855 37 1 4.6514 -1.1012 3.9989 38 1 6.8954 -1.8160 3.2014 39 1 7.0616 -3.6210 1.5349 40 1 4.2456 -3.1664 -3.1898 41 1 3.5083 -4.6972 -3.7287 42 1 2.0455 -2.5297 -7.1398 43 1 -0.1938 -3.0397 -8.0166 44 1 -1.8749 -4.0977 -6.5598 45 1 -1.3134 -4.6453 -4.2296 46 1 1.1869 -5.3299 -2.8646 47 1 0.1479 -3.9987 -2.3042 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069921068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:12 Heat of formation + Delta-G solvation = -12.815023 kcal Electronic energy + Delta-G solvation = -31561.019695 eV Core-core repulsion = 27480.751420 eV Total energy + Delta-G solvation = -4080.268275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.66977 -39.84214 -38.78023 -37.18147 -35.19152 -34.01905 -32.81287 -32.01220 -31.32918 -30.39226 -30.03108 -27.70596 -26.27245 -25.50321 -23.91896 -23.17654 -22.79729 -22.38515 -21.70430 -20.05291 -18.29497 -17.64005 -16.99006 -16.52805 -16.41980 -15.99455 -15.83597 -15.65480 -15.26801 -15.11190 -14.63106 -14.26567 -14.21140 -13.99152 -13.57801 -13.45721 -13.18920 -13.07743 -12.93781 -12.82505 -12.50342 -12.39652 -12.19567 -11.77325 -11.57599 -11.44089 -11.37558 -11.22609 -11.05629 -10.90008 -10.81879 -10.41777 -10.27024 -10.17922 -9.81283 -9.46155 -9.08496 -8.98965 -8.67224 -8.63112 -8.51390 -7.94715 -7.82241 -6.24235 -4.30572 1.46874 1.48313 1.60209 1.71888 3.17028 3.24263 3.27222 3.33224 3.50663 3.78218 3.93871 4.27593 4.38420 4.71374 4.83192 4.92207 5.01005 5.09371 5.13091 5.16425 5.20405 5.21182 5.33624 5.42427 5.46242 5.53980 5.63098 5.64797 5.76211 5.83253 5.86531 5.92351 5.93203 6.12027 6.12622 6.16846 6.22821 6.44931 6.46431 6.51123 6.57401 6.61542 6.64105 6.67553 6.94489 7.07829 7.10620 7.43399 7.67949 7.71480 7.98957 8.20454 8.48072 8.73871 8.94023 9.37805 10.82382 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.003894 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.169880 B = 7188.994386 C = 8529.176394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.590 5.590 11 C 0.171 3.829 12 C 0.124 3.876 13 C -0.135 4.135 14 C -0.084 4.084 15 C -0.181 4.181 16 C 0.087 3.913 17 N -0.459 5.459 18 C 0.531 3.469 19 O -0.549 6.549 20 C -0.147 4.147 21 H 0.127 0.873 22 C 0.086 3.914 23 O -0.314 6.314 24 C 0.137 3.863 25 C -0.153 4.153 26 C -0.093 4.093 27 C -0.157 4.157 28 C -0.082 4.082 29 C -0.148 4.148 30 C -0.063 4.063 31 H 0.265 0.735 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.078 0.922 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 -6.434 -2.664 7.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.134 4.134 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.077 0.923 9 C 0.116 3.884 10 N -0.321 5.321 11 C 0.047 3.953 12 C -0.016 4.016 13 C -0.155 4.155 14 C -0.110 4.110 15 C -0.201 4.201 16 C -0.070 4.070 17 N -0.168 5.168 18 C 0.318 3.682 19 O -0.428 6.428 20 C -0.168 4.168 21 H 0.145 0.855 22 C 0.011 3.989 23 O -0.227 6.227 24 C 0.091 3.909 25 C -0.171 4.171 26 C -0.111 4.111 27 C -0.176 4.176 28 C -0.100 4.100 29 C -0.149 4.149 30 C -0.100 4.100 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.144 0.856 39 H 0.164 0.836 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.142 0.858 46 H 0.096 0.904 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.038 -7.304 -3.344 8.288 hybrid contribution 0.264 2.076 0.951 2.298 sum 2.302 -5.229 -2.393 6.194 Atomic orbital electron populations 1.69912 1.05876 1.27194 1.49676 1.24874 0.94760 0.99064 0.94721 0.86571 0.80295 0.83663 0.77847 1.19743 1.20719 1.20830 1.21447 0.93439 0.90271 1.51878 0.92313 1.19544 0.87420 0.82684 0.98801 1.48172 1.44908 1.35079 1.03925 1.20130 0.92235 0.96750 0.86224 1.21631 0.93334 0.94180 0.92414 1.21988 0.99924 0.96041 0.97591 1.21500 0.92556 0.98255 0.98657 1.22039 0.98224 0.99640 1.00219 1.22655 0.97207 0.93239 0.93921 1.67577 0.98311 1.27750 1.23138 1.19973 0.81370 0.81750 0.85134 1.90662 1.31267 1.33196 1.87633 1.21972 0.96669 1.04710 0.93468 0.85503 1.22754 0.96457 0.98225 0.81493 1.86003 1.28633 1.65602 1.42501 1.18765 0.84472 0.95288 0.92357 1.20558 0.98097 1.05471 0.93018 1.20853 0.92620 0.98110 0.99532 1.20947 0.99665 1.02633 0.94319 1.20888 0.95093 0.98490 0.95540 1.19822 0.94648 1.04422 0.95982 1.20372 0.97735 0.99854 0.92077 0.92563 0.94147 0.94464 0.89388 0.89413 0.84662 0.85413 0.85634 0.83577 0.87335 0.91070 0.85497 0.85805 0.86157 0.85842 0.90391 0.89083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.60 13.29 55.43 0.74 -22.87 16 2 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -13.19 8.71 -34.44 -0.30 -13.49 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.24 5.20 4.84 -5.19 -0.03 5.17 16 10 N -0.59 -11.77 2.45 -176.43 -0.43 -12.20 16 11 C 0.17 3.06 5.72 -5.20 -0.03 3.03 16 12 C 0.12 2.29 6.36 -82.59 -0.53 1.76 16 13 C -0.14 -2.30 9.72 -39.44 -0.38 -2.68 16 14 C -0.08 -1.26 10.18 -39.27 -0.40 -1.66 16 15 C -0.18 -2.60 10.11 -39.44 -0.40 -3.00 16 16 C 0.09 1.40 11.18 -17.55 -0.20 1.21 16 17 N -0.46 -8.76 10.27 -9.47 -0.10 -8.85 16 18 C 0.53 10.70 6.71 -10.98 -0.07 10.63 16 19 O -0.55 -11.98 15.86 5.56 0.09 -11.89 16 20 C -0.15 -2.74 1.89 -91.52 -0.17 -2.91 16 21 H 0.13 2.72 6.23 -51.93 -0.32 2.39 16 22 C 0.09 1.51 5.78 37.37 0.22 1.72 16 23 O -0.31 -5.57 10.27 -19.27 -0.20 -5.77 16 24 C 0.14 2.28 6.47 -39.20 -0.25 2.03 16 25 C -0.15 -2.20 9.94 -39.34 -0.39 -2.59 16 26 C -0.09 -1.15 10.04 -39.66 -0.40 -1.55 16 27 C -0.16 -1.96 10.04 -39.61 -0.40 -2.35 16 28 C -0.08 -1.14 9.67 -39.53 -0.38 -1.52 16 29 C -0.15 -2.37 5.75 -104.44 -0.60 -2.97 16 30 C -0.06 -1.03 5.08 -27.81 -0.14 -1.17 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.04 0.93 5.61 -51.93 -0.29 0.64 16 33 H 0.04 0.85 7.83 -51.93 -0.41 0.44 16 34 H 0.09 1.57 7.50 -51.93 -0.39 1.18 16 35 H 0.09 1.35 7.76 -51.92 -0.40 0.95 16 36 H 0.14 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 38 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 41 H 0.07 1.20 8.04 -51.93 -0.42 0.78 16 42 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 43 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.12 1.47 8.06 -52.48 -0.42 1.04 16 46 H 0.08 1.21 8.09 -51.93 -0.42 0.79 16 47 H 0.09 1.48 7.13 -51.93 -0.37 1.11 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -30.17 393.57 -10.32 -40.49 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.37 Total: 8.35 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -4.95 Total: -8.68 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.21 Total: -43.92 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.11 Total: -17.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.17 -10.32 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069921068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.676 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds