Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00188 * 2 1 4 4 H 1.48500 * 109.47103 * 269.99924 * 3 2 1 5 5 H 1.48503 * 109.47033 * 30.00222 * 3 2 1 6 6 H 1.48507 * 109.47148 * 150.00225 * 3 2 1 7 7 C 1.37884 * 119.99635 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99686 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00273 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47359 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47185 * 179.97438 * 10 9 7 12 12 N 1.46906 * 109.46754 * 179.97438 * 11 10 9 13 13 C 1.46952 * 110.99464 * 170.00003 * 12 11 10 14 14 C 1.53052 * 109.36346 * 183.18803 * 13 12 11 15 15 N 1.46954 * 109.36665 * 301.60287 * 14 13 12 16 16 C 1.38547 * 111.00263 * 183.18696 * 15 14 13 17 17 C 1.39747 * 120.48630 * 179.97438 * 16 15 14 18 18 C 1.38170 * 118.49987 * 180.02562 * 17 16 15 19 19 N 1.32424 * 119.29685 * 359.97438 * 18 17 16 20 20 C 1.32563 * 120.92992 * 0.02562 * 19 18 17 21 21 C 1.48317 * 119.18140 * 179.97438 * 20 19 18 22 22 C 1.39369 * 120.12643 * 179.72725 * 21 20 19 23 23 C 1.38013 * 119.87605 * 179.74482 * 22 21 20 24 24 C 1.38335 * 120.12272 * 0.53206 * 23 22 21 25 25 C 1.38323 * 120.24965 * 359.73761 * 24 23 22 26 26 C 1.38011 * 120.12790 * 359.97438 * 25 24 23 27 27 N 1.32585 * 121.63755 * 0.02562 * 20 19 18 28 28 C 1.46959 * 110.88179 * 59.31383 * 15 14 13 29 29 C 1.46953 * 110.99856 * 293.79809 * 12 11 10 30 30 H 0.96994 * 120.00272 * 359.97438 * 1 2 3 31 31 H 1.09003 * 109.47244 * 59.99491 * 9 7 2 32 32 H 1.08998 * 109.47347 * 299.99965 * 9 7 2 33 33 H 1.09003 * 109.46768 * 59.99820 * 10 9 7 34 34 H 1.08997 * 109.46975 * 299.99768 * 10 9 7 35 35 H 1.08995 * 109.46999 * 60.00303 * 11 10 9 36 36 H 1.08997 * 109.47054 * 299.99816 * 11 10 9 37 37 H 1.08999 * 109.49147 * 63.22186 * 13 12 11 38 38 H 1.09001 * 109.48916 * 303.15487 * 13 12 11 39 39 H 1.08998 * 109.49371 * 181.62904 * 14 13 12 40 40 H 1.09003 * 109.50479 * 61.57881 * 14 13 12 41 41 H 1.08004 * 120.75318 * 359.97438 * 17 16 15 42 42 H 1.08001 * 120.35726 * 179.97438 * 18 17 16 43 43 H 1.07995 * 120.06329 * 0.02562 * 22 21 20 44 44 H 1.08000 * 119.94225 * 180.27053 * 23 22 21 45 45 H 1.07997 * 119.87261 * 179.76494 * 24 23 22 46 46 H 1.08006 * 119.93811 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.06659 * 180.02562 * 26 25 24 48 48 H 1.09004 * 109.48371 * 60.65162 * 28 15 14 49 49 H 1.09001 * 109.48788 * 180.71648 * 28 15 14 50 50 H 1.08994 * 109.49562 * 296.77897 * 29 12 11 51 51 H 1.08999 * 109.49095 * 56.85344 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4801 -4.9872 0.0012 12 7 2.4347 -6.1038 0.0006 13 6 1.7501 -7.3820 0.2394 14 6 2.7856 -8.5068 0.3104 15 7 3.5478 -8.5474 -0.9454 16 6 4.4481 -9.6005 -0.9460 17 6 5.2771 -9.8240 -2.0486 18 6 6.1593 -10.8864 -2.0056 19 7 6.1944 -11.6564 -0.9288 20 6 5.3963 -11.4213 0.1033 21 6 5.4675 -12.3088 1.2895 22 6 4.6416 -12.0762 2.3877 23 6 4.7085 -12.9084 3.4867 24 6 5.6010 -13.9652 3.5039 25 6 6.4271 -14.1974 2.4190 26 6 6.3646 -13.3753 1.3123 27 7 4.5353 -10.4131 0.1010 28 6 4.2324 -7.2691 -1.1843 29 6 3.1968 -6.1444 -1.2553 30 1 -0.4850 0.8400 0.0004 31 1 0.6246 -2.5571 -0.8897 32 1 0.6240 -2.5568 0.8903 33 1 2.8718 -3.6044 0.8905 34 1 2.8718 -3.6045 -0.8895 35 1 0.8532 -5.0452 -0.8886 36 1 0.8538 -5.0447 0.8914 37 1 1.0539 -7.5795 -0.5757 38 1 1.2032 -7.3312 1.1809 39 1 2.2778 -9.4598 0.4586 40 1 3.4654 -8.3237 1.1426 41 1 5.2286 -9.1812 -2.9152 42 1 6.8135 -11.0869 -2.8412 43 1 3.9474 -11.2490 2.3770 44 1 4.0659 -12.7318 4.3365 45 1 5.6526 -14.6116 4.3675 46 1 7.1223 -15.0238 2.4380 47 1 7.0098 -13.5577 0.4656 48 1 4.9285 -7.0716 -0.3691 49 1 4.7793 -7.3199 -2.1258 50 1 2.5172 -6.3279 -2.0874 51 1 3.7047 -5.1914 -1.4034 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069950595.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = 87.622540 kcal Electronic energy + Delta-G solvation = -29631.209868 eV Core-core repulsion = 25723.422738 eV Total energy + Delta-G solvation = -3907.787130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 352.196 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.56592 -39.63723 -38.93187 -36.46636 -33.89783 -33.66722 -32.57384 -31.48882 -31.23863 -30.88362 -30.06662 -27.74062 -25.55753 -25.22682 -23.78499 -23.59949 -22.52961 -22.16992 -21.58063 -20.10592 -19.86934 -18.30395 -17.74035 -16.93563 -16.31730 -15.99598 -15.69819 -15.57253 -15.16513 -15.04045 -14.91743 -14.67399 -14.54987 -14.41308 -14.24296 -13.95546 -13.78439 -13.62636 -13.44559 -12.98794 -12.44545 -12.27999 -11.80115 -11.70810 -11.57642 -11.43098 -11.40280 -11.36079 -11.18051 -11.03867 -10.95587 -10.82158 -10.54254 -10.52780 -10.42841 -9.64013 -9.53860 -9.34807 -9.25573 -9.11380 -9.06081 -8.59300 -8.34927 -8.17550 -6.00132 -4.02222 0.14075 0.84579 1.10499 1.36710 3.00750 3.30112 3.31520 3.37862 3.41418 3.51494 3.78974 3.88326 3.99472 4.45193 4.46774 4.63151 4.64927 4.69636 4.76461 4.80369 4.90890 4.96790 5.08141 5.14527 5.15434 5.19163 5.27749 5.29392 5.35759 5.36824 5.56642 5.62950 5.70137 5.74107 5.75716 5.82247 5.85015 5.91549 6.02631 6.13363 6.16260 6.19873 6.27222 6.31685 6.60368 6.64638 6.66846 6.76275 6.88607 7.07460 7.25420 7.30004 7.67616 7.82195 7.84075 8.00073 8.43214 9.04901 9.61765 11.11266 Molecular weight = 352.20amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.001687 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.619881 B =16590.820245 C =17270.696484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.051 3.949 14 C 0.070 3.930 15 N -0.474 5.474 16 C 0.367 3.633 17 C -0.249 4.249 18 C 0.166 3.834 19 N -0.538 5.538 20 C 0.384 3.616 21 C -0.048 4.048 22 C -0.069 4.069 23 C -0.131 4.131 24 C -0.101 4.101 25 C -0.133 4.133 26 C -0.070 4.070 27 N -0.548 5.548 28 C 0.065 3.935 29 C 0.053 3.947 30 H 0.260 0.740 31 H 0.013 0.987 32 H 0.016 0.984 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.149 0.851 42 H 0.171 0.829 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.126 0.874 47 H 0.136 0.864 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.044 0.956 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 -29.748 0.346 31.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.266 5.266 13 C -0.077 4.077 14 C -0.057 4.057 15 N -0.191 5.191 16 C 0.126 3.874 17 C -0.274 4.274 18 C 0.003 3.997 19 N -0.254 5.254 20 C 0.118 3.882 21 C -0.050 4.050 22 C -0.089 4.089 23 C -0.149 4.149 24 C -0.119 4.119 25 C -0.151 4.151 26 C -0.090 4.090 27 N -0.268 5.268 28 C -0.061 4.061 29 C -0.075 4.075 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.166 0.834 42 H 0.188 0.812 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.154 0.846 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.062 0.938 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 11.573 -30.089 1.083 32.256 hybrid contribution 0.108 1.525 -1.036 1.847 sum 11.682 -28.564 0.046 30.860 Atomic orbital electron populations 1.69961 1.06049 1.26561 1.50960 1.25029 0.94847 0.99253 0.95386 0.86601 0.79874 0.83508 0.78059 1.20714 1.21233 1.19878 1.21241 0.93022 0.91034 1.50405 0.92705 1.19075 0.94033 0.91383 0.97128 1.21658 0.99177 0.92704 1.00721 1.22296 0.93551 0.90633 1.00482 1.62267 1.27451 1.03179 1.33703 1.22239 0.95082 0.88733 1.01651 1.22137 0.95839 0.99275 0.88429 1.59083 1.21533 1.02957 1.35543 1.20098 0.87122 0.91476 0.88693 1.22411 1.00878 1.03320 1.00836 1.22981 0.93615 0.88244 0.94894 1.68325 1.25157 1.30375 1.01525 1.21070 0.86497 0.89003 0.91613 1.18086 0.99551 0.95628 0.91696 1.21347 0.97162 0.98655 0.91728 1.21155 0.99633 0.95643 0.98518 1.21350 0.95148 0.97186 0.98262 1.21127 1.00190 1.00123 0.93703 1.21316 0.96531 0.92821 0.98349 1.68285 1.23873 1.07713 1.26938 1.22425 0.96110 0.85382 1.02168 1.22225 0.95855 0.98087 0.91333 0.93040 0.96814 0.96573 0.92590 0.93496 0.95082 0.91001 0.94164 0.89623 0.89406 0.91915 0.83368 0.81233 0.84621 0.85459 0.85806 0.85560 0.84587 0.92272 0.89358 0.93792 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.10 -2.12 5.09 -26.73 -0.14 -2.25 16 11 C 0.06 0.96 4.96 -3.82 -0.02 0.94 16 12 N -0.54 -7.78 4.71 -234.47 -1.10 -8.88 16 13 C 0.05 0.64 5.61 -3.77 -0.02 0.61 16 14 C 0.07 0.81 4.80 -3.77 -0.02 0.79 16 15 N -0.47 -5.44 4.73 -172.87 -0.82 -6.26 16 16 C 0.37 4.22 6.41 -154.87 -0.99 3.22 16 17 C -0.25 -2.30 9.30 -39.04 -0.36 -2.67 16 18 C 0.17 1.45 11.28 -17.32 -0.20 1.25 16 19 N -0.54 -5.89 9.45 -11.23 -0.11 -6.00 16 20 C 0.38 4.56 7.56 -156.98 -1.19 3.37 16 21 C -0.05 -0.50 5.88 -104.90 -0.62 -1.12 16 22 C -0.07 -0.67 9.56 -39.24 -0.38 -1.04 16 23 C -0.13 -1.02 10.03 -39.63 -0.40 -1.42 16 24 C -0.10 -0.70 10.04 -39.51 -0.40 -1.09 16 25 C -0.13 -0.97 10.03 -39.63 -0.40 -1.36 16 26 C -0.07 -0.64 9.56 -39.24 -0.38 -1.01 16 27 N -0.55 -6.69 7.88 -10.38 -0.08 -6.77 16 28 C 0.06 0.71 5.37 -3.76 -0.02 0.69 16 29 C 0.05 0.68 5.41 -3.77 -0.02 0.66 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 0.92 6.49 -51.93 -0.34 0.58 16 35 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.07 1.21 8.03 -51.93 -0.42 0.79 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.99 8.07 -51.93 -0.42 0.57 16 39 H 0.09 0.99 7.84 -51.93 -0.41 0.58 16 40 H 0.06 0.79 8.06 -51.93 -0.42 0.37 16 41 H 0.15 1.05 7.26 -52.48 -0.38 0.67 16 42 H 0.17 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.14 1.32 7.51 -52.49 -0.39 0.92 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 46 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 47 H 0.14 1.16 7.51 -52.49 -0.39 0.76 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.09 0.77 6.86 -51.93 -0.36 0.42 16 50 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 1.28 6.34 -51.93 -0.33 0.96 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -32.18 410.57 -14.33 -46.52 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.04 Total: -1.78 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -6.08 Total: -13.47 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -1.37 Total: -54.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.18 -14.33 -46.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069950595.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.140 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds