Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39868 * 125.89831 * 2 1 4 4 C 1.35314 * 107.92189 * 179.76490 * 3 2 1 5 5 C 1.50705 * 126.12766 * 180.26677 * 4 3 2 6 6 N 1.34952 * 107.74578 * 0.42303 * 4 3 2 7 7 C 1.46500 * 126.03629 * 179.84130 * 6 4 3 8 8 C 1.52998 * 109.46953 * 261.83355 * 7 6 4 9 9 H 1.09007 * 109.99429 * 172.13611 * 8 7 6 10 10 C 1.54325 * 109.99292 * 51.10061 * 8 7 6 11 11 C 1.55159 * 103.02375 * 218.66304 * 10 8 7 12 12 C 1.54915 * 101.57569 * 35.30603 * 11 10 8 13 13 N 1.47019 * 109.88297 * 293.23087 * 8 7 6 14 14 C 1.34780 * 125.64771 * 298.39908 * 13 8 7 15 15 O 1.21555 * 119.99474 * 186.28182 * 14 13 8 16 16 C 1.47884 * 120.00312 * 6.27616 * 14 13 8 17 17 C 1.39919 * 120.02209 * 341.47630 * 16 14 13 18 18 C 1.38332 * 120.35499 * 179.97438 * 17 16 14 19 19 C 1.37753 * 120.41219 * 359.78317 * 18 17 16 20 20 C 1.40752 * 120.03873 * 0.47421 * 19 18 17 21 21 C 1.41440 * 120.17736 * 179.78748 * 20 19 18 22 22 H 1.08002 * 120.00053 * 148.56704 * 21 20 19 23 23 C 1.39940 * 119.99688 * 328.56691 * 21 20 19 24 24 N 1.30830 * 119.99509 * 167.05670 * 23 21 20 25 25 Si 1.86803 * 120.00039 * 347.33389 * 23 21 20 26 26 H 1.48498 * 109.47038 * 92.87471 * 25 23 21 27 27 H 1.48503 * 109.46820 * 212.87508 * 25 23 21 28 28 H 1.48494 * 109.46933 * 332.87214 * 25 23 21 29 29 C 1.38991 * 120.02458 * 161.49499 * 16 14 13 30 30 N 1.30835 * 125.90203 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46786 * 269.99719 * 1 2 3 32 32 H 1.08998 * 109.47328 * 29.99368 * 1 2 3 33 33 H 1.09004 * 109.47025 * 150.00156 * 1 2 3 34 34 H 1.08008 * 126.04118 * 0.02562 * 3 2 1 35 35 H 1.08997 * 109.46868 * 273.68089 * 5 4 3 36 36 H 1.08996 * 109.47360 * 33.68919 * 5 4 3 37 37 H 1.09005 * 109.47066 * 153.69102 * 5 4 3 38 38 H 1.09002 * 109.46807 * 141.83618 * 7 6 4 39 39 H 1.08996 * 109.47417 * 21.83672 * 7 6 4 40 40 H 1.09006 * 110.85434 * 100.19236 * 10 8 7 41 41 H 1.09007 * 110.66728 * 337.04789 * 10 8 7 42 42 H 1.08994 * 111.00504 * 277.23464 * 11 10 8 43 43 H 1.08999 * 111.00469 * 153.37725 * 11 10 8 44 44 H 1.09001 * 110.36051 * 204.14920 * 12 11 10 45 45 H 1.09003 * 110.36483 * 81.83190 * 12 11 10 46 46 H 1.07994 * 119.82372 * 0.02562 * 17 16 14 47 47 H 1.08000 * 119.78895 * 179.97438 * 18 17 16 48 48 H 1.07998 * 119.97922 * 180.25742 * 19 18 17 49 49 H 0.97004 * 119.99051 * 180.02562 * 24 23 21 50 50 H 1.08004 * 120.20087 * 359.95647 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7154 0.0053 5 6 4.8350 1.5990 0.0129 6 7 3.6088 -0.6341 -0.0010 7 6 4.7900 -1.5007 -0.0016 8 6 5.0840 -1.9609 -1.4308 9 1 6.0366 -2.4899 -1.4635 10 6 5.1298 -0.7436 -2.3783 11 6 4.4427 -1.2751 -3.6639 12 6 3.3627 -2.2156 -3.0731 13 7 4.0064 -2.8420 -1.9041 14 6 3.6604 -4.0238 -1.3562 15 8 2.8277 -4.7242 -1.8981 16 6 4.2939 -4.4685 -0.0961 17 6 5.4961 -3.8899 0.3253 18 6 6.0944 -4.3002 1.5031 19 6 5.5116 -5.2795 2.2769 20 6 4.3051 -5.8769 1.8665 21 6 3.7065 -6.8859 2.6565 22 1 2.6318 -6.9922 2.6734 23 6 4.5067 -7.7466 3.4162 24 7 3.9638 -8.5055 4.3332 25 14 6.3512 -7.8062 3.1263 26 1 7.0283 -6.8618 4.0508 27 1 6.8470 -9.1837 3.3751 28 1 6.6443 -7.4206 1.7225 29 6 3.6956 -5.4617 0.6704 30 7 2.2742 -1.0598 -0.0005 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5137 33 1 -0.3633 -0.8900 -0.5138 34 1 1.9923 2.1599 0.0004 35 1 5.0955 1.8675 -1.0109 36 1 4.6253 2.5035 0.5837 37 1 5.6673 1.0648 0.4713 38 1 4.6031 -2.3700 0.6288 39 1 5.6461 -0.9483 0.3856 40 1 6.1593 -0.4507 -2.5842 41 1 4.5692 0.0918 -1.9586 42 1 5.1477 -1.8300 -4.2828 43 1 3.9862 -0.4617 -4.2278 44 1 3.0804 -2.9745 -3.8028 45 1 2.4889 -1.6424 -2.7633 46 1 5.9591 -3.1182 -0.2718 47 1 7.0225 -3.8476 1.8195 48 1 5.9826 -5.5916 3.1973 49 1 4.5186 -9.1018 4.8601 50 1 2.7674 -5.9107 0.3491 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070005127.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = 98.678388 kcal Electronic energy + Delta-G solvation = -32746.119243 eV Core-core repulsion = 28741.092869 eV Total energy + Delta-G solvation = -4005.026374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.50487 -40.08561 -37.76161 -37.11290 -34.28473 -33.70659 -32.50808 -31.56737 -30.90633 -30.09709 -29.83113 -27.90648 -26.97428 -25.67552 -25.06780 -23.54081 -21.63145 -21.50037 -20.65748 -20.28063 -19.55874 -18.73464 -17.79275 -16.69623 -16.42839 -16.18432 -15.76531 -15.24134 -14.80717 -14.61745 -14.29704 -14.12727 -13.80236 -13.75081 -13.58443 -13.39922 -13.18537 -13.15062 -12.86702 -12.80188 -12.79227 -12.49286 -12.37180 -12.23482 -12.09080 -11.95766 -11.74657 -11.31580 -11.30514 -11.16079 -11.09242 -10.77291 -10.65831 -10.41246 -10.22393 -9.89221 -9.71755 -9.43787 -9.11584 -8.94100 -8.53589 -8.20646 -7.89168 -7.66203 -7.00346 -4.57940 1.91260 2.01861 2.42356 2.66531 2.91150 3.02270 3.15155 3.21839 3.23567 3.59699 3.90741 4.35063 4.38630 4.42231 4.59892 4.65142 4.67759 4.92204 4.95753 5.07219 5.09080 5.25337 5.28549 5.33525 5.35043 5.39667 5.52200 5.60344 5.66363 5.68495 5.71622 5.74168 5.81173 5.84257 5.88204 5.94283 5.97022 6.07268 6.11810 6.28048 6.31800 6.50092 6.60157 6.68498 6.85036 6.95316 7.18730 7.20130 7.34239 7.41442 7.70998 7.78081 7.95850 7.99037 8.25577 8.48739 8.66956 8.71446 10.01903 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.012782 B = 0.003479 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.066062 B = 8046.233814 C = 8331.128944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.057 3.943 3 C -0.277 4.277 4 C 0.071 3.929 5 C -0.092 4.092 6 N -0.348 5.348 7 C 0.081 3.919 8 C 0.117 3.883 9 H 0.105 0.895 10 C -0.139 4.139 11 C -0.130 4.130 12 C 0.112 3.888 13 N -0.604 5.604 14 C 0.587 3.413 15 O -0.543 6.543 16 C -0.099 4.099 17 C -0.254 4.254 18 C -0.086 4.086 19 C -0.223 4.223 20 C 0.084 3.916 21 C -0.438 4.438 22 H 0.094 0.906 23 C 0.081 3.919 24 N -0.807 5.807 25 Si 0.914 3.086 26 H -0.270 1.270 27 H -0.291 1.291 28 H -0.242 1.242 29 C -0.130 4.130 30 N -0.267 5.267 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.148 0.852 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.122 0.878 47 H 0.100 0.900 48 H 0.103 0.897 49 H 0.287 0.713 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 20.302 -9.775 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.109 4.109 3 C -0.306 4.306 4 C -0.056 4.056 5 C -0.150 4.150 6 N -0.130 5.130 7 C -0.040 4.040 8 C 0.012 3.988 9 H 0.122 0.878 10 C -0.177 4.177 11 C -0.168 4.168 12 C -0.011 4.011 13 N -0.339 5.339 14 C 0.379 3.621 15 O -0.421 6.421 16 C -0.102 4.102 17 C -0.273 4.273 18 C -0.104 4.104 19 C -0.243 4.243 20 C 0.081 3.919 21 C -0.466 4.466 22 H 0.112 0.888 23 C -0.138 4.138 24 N -0.431 5.431 25 Si 0.741 3.259 26 H -0.196 1.196 27 H -0.218 1.218 28 H -0.166 1.166 29 C -0.150 4.150 30 N -0.089 5.089 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.157 0.843 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.165 0.835 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.139 0.861 47 H 0.118 0.882 48 H 0.121 0.879 49 H 0.097 0.903 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 4.362 18.244 -9.819 21.172 hybrid contribution 0.854 0.807 0.207 1.193 sum 5.216 19.050 -9.611 21.966 Atomic orbital electron populations 1.20111 0.87261 1.02793 1.02682 1.22288 0.96808 0.90954 1.00848 1.20988 0.91052 0.99319 1.19279 1.21025 0.97027 0.85143 1.02427 1.20488 0.93333 0.98179 1.03034 1.48591 1.05492 1.03364 1.55539 1.23532 0.84525 0.96756 0.99217 1.22254 0.92163 0.91263 0.93121 0.87768 1.22909 1.01853 0.97497 0.95476 1.22730 0.98136 0.99068 0.96853 1.22078 0.95492 0.95662 0.87859 1.48149 1.34930 1.19610 1.31182 1.18388 0.80962 0.78565 0.84143 1.90705 1.34384 1.53802 1.63226 1.19349 0.97036 0.99498 0.94363 1.21332 0.98709 1.06681 1.00582 1.20511 0.97930 0.97169 0.94800 1.21174 1.00590 1.01375 1.01141 1.17706 0.91262 0.92302 0.90627 1.19560 0.96738 1.11007 1.19331 0.88824 1.26173 1.01828 0.93888 0.91897 1.69658 1.39385 1.19056 1.14976 0.86276 0.81413 0.76466 0.81724 1.19637 1.21836 1.16571 1.21268 1.01453 0.98081 0.94217 1.77588 0.86106 1.21984 1.23258 0.90867 0.90966 0.91129 0.84341 0.90390 0.89997 0.91179 0.83493 0.88482 0.90001 0.89837 0.90632 0.90210 0.90665 0.91880 0.86073 0.88225 0.87914 0.90290 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.45 36.01 0.38 -0.42 16 2 C 0.06 0.83 7.22 -82.41 -0.59 0.23 16 3 C -0.28 -3.40 10.65 -40.01 -0.43 -3.83 16 4 C 0.07 0.83 5.32 -82.26 -0.44 0.39 16 5 C -0.09 -0.68 9.60 36.01 0.35 -0.33 16 6 N -0.35 -4.95 3.06 -57.14 -0.17 -5.13 16 7 C 0.08 1.08 4.79 -4.04 -0.02 1.06 16 8 C 0.12 1.46 2.53 -66.95 -0.17 1.29 16 9 H 0.11 1.21 6.08 -51.92 -0.32 0.89 16 10 C -0.14 -1.31 6.35 -24.89 -0.16 -1.47 16 11 C -0.13 -1.28 7.09 -24.58 -0.17 -1.46 16 12 C 0.11 1.58 6.94 -2.53 -0.02 1.56 16 13 N -0.60 -9.86 3.02 -164.10 -0.50 -10.35 16 14 C 0.59 12.31 7.61 -12.31 -0.09 12.21 16 15 O -0.54 -13.18 16.71 5.32 0.09 -13.10 16 16 C -0.10 -2.15 5.14 -105.04 -0.54 -2.69 16 17 C -0.25 -4.70 6.10 -38.92 -0.24 -4.94 16 18 C -0.09 -1.67 10.01 -39.72 -0.40 -2.07 16 19 C -0.22 -5.11 7.00 -38.81 -0.27 -5.39 16 20 C 0.08 2.12 5.12 -106.87 -0.55 1.58 16 21 C -0.44 -11.89 9.60 -37.73 -0.36 -12.25 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.08 2.11 5.46 -17.34 -0.09 2.02 16 24 N -0.81 -21.45 13.93 55.55 0.77 -20.68 16 25 Si 0.91 20.44 24.41 -169.99 -4.15 16.29 16 26 H -0.27 -5.76 6.68 56.52 0.38 -5.38 16 27 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.24 -5.54 6.69 56.52 0.38 -5.16 16 29 C -0.13 -3.19 9.33 -38.44 -0.36 -3.55 16 30 N -0.27 -4.59 12.58 33.67 0.42 -4.17 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.14 1.37 8.06 -52.48 -0.42 0.94 16 35 H 0.08 0.46 7.46 -51.93 -0.39 0.07 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.46 6.86 -51.93 -0.36 0.11 16 38 H 0.15 2.50 3.93 -53.13 -0.21 2.29 16 39 H 0.10 0.97 6.77 -51.93 -0.35 0.62 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.08 0.82 4.02 -51.93 -0.21 0.61 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.12 1.79 2.74 -52.49 -0.14 1.64 16 47 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.10 2.34 4.47 -52.49 -0.23 2.11 16 49 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 50 H 0.11 2.91 7.75 -52.48 -0.41 2.50 16 LS Contribution 386.16 15.07 5.82 5.82 Total: -1.00 -32.29 386.16 -8.75 -41.05 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.86 Total: 8.32 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -4.18 Total: -18.05 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.53 Total: -40.33 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.15 Total: 16.29 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.29 -8.75 -41.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070005127.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.726 kcal (2) G-P(sol) polarization free energy of solvation -32.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds