Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86801 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47440 * 274.96472 * 3 2 1 5 5 H 1.48505 * 109.46848 * 34.96284 * 3 2 1 6 6 H 1.48499 * 109.47352 * 154.96086 * 3 2 1 7 7 C 1.39936 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99721 * 197.15936 * 7 2 1 9 9 C 1.41436 * 119.99784 * 17.15853 * 7 2 1 10 10 C 1.40785 * 120.18191 * 24.93784 * 9 7 2 11 11 C 1.37703 * 120.04177 * 180.02562 * 10 9 7 12 12 C 1.38368 * 120.41455 * 359.97438 * 11 10 9 13 13 C 1.39885 * 120.35866 * 0.02562 * 12 11 10 14 14 C 1.47886 * 120.02772 * 180.02562 * 13 12 11 15 15 O 1.21548 * 119.99801 * 43.81973 * 14 13 12 16 16 N 1.34771 * 119.99889 * 223.81636 * 14 13 12 17 17 C 1.47613 * 118.74927 * 171.08398 * 16 14 13 18 18 C 1.53796 * 111.30367 * 138.33711 * 17 16 14 19 19 C 1.51267 * 109.63084 * 319.96000 * 18 17 16 20 20 N 1.46198 * 109.09932 * 92.41123 * 19 18 17 21 21 C 1.39044 * 111.00266 * 144.76528 * 20 19 18 22 22 C 1.39484 * 120.15670 * 74.98868 * 21 20 19 23 23 C 1.38558 * 117.90877 * 180.02562 * 22 21 20 24 24 C 1.38820 * 118.03492 * 0.02562 * 23 22 21 25 25 N 1.31790 * 120.01705 * 0.02562 * 24 23 22 26 26 N 1.28347 * 122.28449 * 359.66682 * 25 24 23 27 27 C 1.41443 * 116.34388 * 272.96836 * 20 19 18 28 28 C 1.44929 * 118.85318 * 351.10907 * 16 14 13 29 29 C 1.39033 * 119.94560 * 0.26931 * 13 12 11 30 30 H 0.97005 * 120.00574 * 0.02562 * 1 2 3 31 31 H 1.07998 * 119.97505 * 0.02562 * 10 9 7 32 32 H 1.07998 * 119.79274 * 179.97438 * 11 10 9 33 33 H 1.07998 * 119.82409 * 179.97438 * 12 11 10 34 34 H 1.09009 * 109.11064 * 17.87054 * 17 16 14 35 35 H 1.08996 * 109.06780 * 258.77991 * 17 16 14 36 36 H 1.09001 * 109.44717 * 199.91119 * 18 17 16 37 37 H 1.09004 * 109.41818 * 79.99577 * 18 17 16 38 38 H 1.08999 * 109.53919 * 332.52318 * 19 18 17 39 39 H 1.09006 * 109.53607 * 212.29476 * 19 18 17 40 40 H 1.08001 * 121.04754 * 0.02562 * 22 21 20 41 41 H 1.07994 * 120.98687 * 180.02562 * 23 22 21 42 42 H 1.08004 * 119.99209 * 179.97438 * 24 23 22 43 43 H 1.09004 * 109.38361 * 183.63350 * 27 20 19 44 44 H 1.08995 * 109.38585 * 303.43041 * 27 20 19 45 45 H 1.09002 * 109.53591 * 149.72305 * 28 16 14 46 46 H 1.09006 * 109.35333 * 29.84123 * 28 16 14 47 47 H 1.08002 * 120.20354 * 179.70492 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3847 2.1071 -1.3948 5 1 1.4959 2.6201 0.8023 6 1 3.5882 1.4124 0.5926 7 6 2.0080 -1.2118 -0.0005 8 1 3.0520 -1.2327 0.2754 9 6 1.3481 -2.4093 -0.3624 10 6 0.2145 -2.3685 -1.1963 11 6 -0.4261 -3.5361 -1.5464 12 6 0.0372 -4.7552 -1.0840 13 6 1.1620 -4.8155 -0.2545 14 6 1.6512 -6.1224 0.2351 15 8 1.7212 -7.0685 -0.5247 16 7 2.0195 -6.2642 1.5237 17 6 2.3126 -7.6182 2.0334 18 6 3.5539 -7.6169 2.9414 19 6 4.6080 -6.7010 2.3597 20 7 4.4525 -5.3662 2.9354 21 6 5.6875 -4.7521 3.1109 22 6 6.3789 -4.2420 2.0121 23 6 7.6059 -3.6401 2.2403 24 6 8.0713 -3.5823 3.5468 25 7 7.3515 -4.0916 4.5263 26 7 6.2117 -4.6454 4.3230 27 6 3.5452 -4.5017 2.2796 28 6 2.1130 -5.0832 2.3585 29 6 1.8166 -3.6454 0.1133 30 1 -0.4851 0.8400 -0.0004 31 1 -0.1529 -1.4209 -1.5616 32 1 -1.2956 -3.5002 -2.1860 33 1 -0.4728 -5.6650 -1.3642 34 1 2.4877 -8.2867 1.1904 35 1 1.4550 -7.9780 2.6019 36 1 3.9522 -8.6290 3.0131 37 1 3.2758 -7.2651 3.9350 38 1 4.4876 -6.6476 1.2777 39 1 5.5988 -7.0877 2.5986 40 1 5.9707 -4.3139 1.0148 41 1 8.1831 -3.2281 1.4258 42 1 9.0240 -3.1205 3.7606 43 1 3.5655 -3.5237 2.7605 44 1 3.8362 -4.3971 1.2345 45 1 1.8852 -5.3477 3.3911 46 1 1.3989 -4.3370 2.0098 47 1 2.6826 -3.6867 0.7574 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070021586.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = 89.085248 kcal Electronic energy + Delta-G solvation = -31733.040824 eV Core-core repulsion = 27689.484028 eV Total energy + Delta-G solvation = -4043.556797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.47079 -40.21607 -38.26441 -37.19120 -35.22457 -33.87189 -33.31005 -33.11540 -31.49071 -30.04385 -29.65110 -27.97051 -26.28374 -25.40612 -24.82996 -23.78467 -23.05729 -21.80753 -20.75814 -20.54907 -18.98934 -17.89630 -17.63779 -17.27471 -16.76777 -16.29238 -16.02830 -15.83234 -15.32977 -15.21652 -14.79440 -14.44134 -14.28841 -14.10744 -13.61483 -13.55618 -13.32565 -13.06314 -12.87375 -12.52275 -12.36044 -12.02974 -11.90839 -11.76438 -11.61050 -11.31919 -11.28145 -11.09253 -10.96284 -10.88026 -10.72549 -10.57516 -10.42349 -10.30668 -10.05275 -9.88456 -9.58173 -9.32607 -9.12816 -8.48187 -8.30368 -7.66815 -7.58808 -6.90646 -4.53660 0.64098 0.71435 2.24312 2.64724 2.98257 3.00459 3.05486 3.16976 3.31302 3.38562 3.53837 3.81201 4.20165 4.42509 4.47084 4.48329 4.56378 4.74055 4.82762 4.96952 5.02290 5.05809 5.27891 5.40649 5.44196 5.50020 5.53533 5.56408 5.59760 5.77732 5.81449 5.88271 5.90647 5.96870 6.12992 6.17056 6.24476 6.31537 6.65339 6.79329 6.83712 6.94563 6.99382 7.07136 7.12120 7.27578 7.55655 7.72198 7.80380 7.87990 8.01948 8.41636 8.64459 8.65139 8.70603 8.74637 10.04069 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.007884 B = 0.004603 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3550.420319 B = 6081.560545 C = 9013.226118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.140 4.140 11 C -0.112 4.112 12 C -0.182 4.182 13 C -0.112 4.112 14 C 0.564 3.436 15 O -0.553 6.553 16 N -0.610 5.610 17 C 0.110 3.890 18 C -0.129 4.129 19 C 0.085 3.915 20 N -0.512 5.512 21 C 0.264 3.736 22 C -0.145 4.145 23 C -0.107 4.107 24 C 0.029 3.971 25 N -0.235 5.235 26 N -0.227 5.227 27 C 0.053 3.947 28 C 0.108 3.892 29 C -0.219 4.219 30 H 0.282 0.718 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.172 0.828 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.081 -5.871 4.828 12.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.102 3.898 10 C -0.160 4.160 11 C -0.130 4.130 12 C -0.203 4.203 13 C -0.115 4.115 14 C 0.356 3.644 15 O -0.432 6.432 16 N -0.343 5.343 17 C -0.012 4.012 18 C -0.167 4.167 19 C -0.041 4.041 20 N -0.235 5.235 21 C 0.028 3.972 22 C -0.177 4.177 23 C -0.136 4.136 24 C -0.136 4.136 25 N -0.076 5.076 26 N -0.070 5.070 27 C -0.076 4.076 28 C -0.016 4.016 29 C -0.239 4.239 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.189 0.811 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.101 0.899 46 H 0.135 0.865 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.540 -6.616 6.523 13.317 hybrid contribution 0.759 1.437 -2.305 2.820 sum 10.299 -5.179 4.218 12.275 Atomic orbital electron populations 1.69788 1.07523 1.29413 1.35015 1.25862 0.94718 1.01257 0.92171 0.86334 0.80582 0.80840 0.79233 1.19294 1.20164 1.18650 1.19495 0.97721 0.90985 1.41034 0.90534 1.17530 0.91502 0.91817 0.88992 1.21549 0.98296 0.96992 0.99120 1.20660 0.99202 0.92895 1.00275 1.20342 0.99084 0.96715 1.04119 1.19262 0.99091 0.91088 1.02010 1.19124 0.75432 0.88947 0.80937 1.90662 1.54895 1.42242 1.55391 1.47758 1.68551 1.07123 1.10877 1.21800 0.96892 0.84108 0.98390 1.21857 0.94913 0.99399 1.00558 1.21548 0.99140 0.85762 0.97672 1.55115 1.06375 1.04038 1.58004 1.21187 0.91548 0.94021 0.90430 1.23087 0.95516 0.97325 1.01772 1.22402 0.95794 0.96690 0.98739 1.24335 1.01356 0.97399 0.90510 1.73070 0.99731 1.05320 1.29516 1.73033 1.04134 1.10049 1.19807 1.22219 0.92602 0.95583 0.97159 1.21975 0.95608 0.88219 0.95848 1.21940 1.04268 0.91736 1.05926 0.90688 0.86069 0.88688 0.88712 0.89421 0.91954 0.90159 0.89654 0.92709 0.91269 0.83386 0.83256 0.81071 0.88924 0.92872 0.89924 0.86461 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.96 10.94 55.55 0.61 -18.35 16 2 C 0.08 1.80 5.15 -17.35 -0.09 1.71 16 3 Si 0.91 17.43 29.59 -169.99 -5.03 12.40 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.46 -11.04 9.05 -37.73 -0.34 -11.38 16 8 H 0.08 1.75 7.90 -52.48 -0.41 1.33 16 9 C 0.10 2.49 5.57 -106.87 -0.60 1.90 16 10 C -0.14 -3.36 8.69 -38.81 -0.34 -3.70 16 11 C -0.11 -2.48 10.01 -39.73 -0.40 -2.88 16 12 C -0.18 -4.03 9.68 -38.92 -0.38 -4.41 16 13 C -0.11 -2.39 5.15 -105.04 -0.54 -2.93 16 14 C 0.56 11.14 7.25 -12.31 -0.09 11.05 16 15 O -0.55 -12.22 16.27 5.32 0.09 -12.13 16 16 N -0.61 -9.68 2.18 -173.51 -0.38 -10.06 16 17 C 0.11 1.44 6.19 -3.02 -0.02 1.42 16 18 C -0.13 -1.39 5.78 -27.19 -0.16 -1.55 16 19 C 0.08 1.02 5.11 -5.08 -0.03 1.00 16 20 N -0.51 -6.81 3.88 -177.65 -0.69 -7.50 16 21 C 0.26 3.56 5.30 -154.77 -0.82 2.74 16 22 C -0.14 -1.67 9.21 -39.00 -0.36 -2.03 16 23 C -0.11 -1.00 10.20 -39.25 -0.40 -1.40 16 24 C 0.03 0.29 11.31 -17.35 -0.20 0.09 16 25 N -0.23 -3.19 11.49 30.57 0.35 -2.84 16 26 N -0.23 -3.39 11.54 31.23 0.36 -3.03 16 27 C 0.05 0.76 3.47 -5.74 -0.02 0.74 16 28 C 0.11 1.61 5.05 -3.95 -0.02 1.59 16 29 C -0.22 -4.71 7.15 -38.44 -0.28 -4.98 16 30 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 31 H 0.12 3.01 6.15 -52.49 -0.32 2.68 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.09 2.01 8.06 -52.49 -0.42 1.59 16 34 H 0.09 1.24 6.93 -51.92 -0.36 0.88 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.95 7.98 -51.93 -0.41 0.54 16 38 H 0.05 0.74 7.32 -51.93 -0.38 0.36 16 39 H 0.07 0.78 7.69 -51.93 -0.40 0.38 16 40 H 0.15 1.62 7.36 -52.49 -0.39 1.23 16 41 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.09 1.38 7.97 -51.93 -0.41 0.97 16 44 H 0.05 0.83 5.39 -51.93 -0.28 0.55 16 45 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 46 H 0.12 2.04 5.16 -51.93 -0.27 1.77 16 47 H 0.12 2.29 2.68 -52.49 -0.14 2.15 16 LS Contribution 373.97 15.07 5.64 5.64 Total: -1.00 -28.93 373.97 -9.99 -38.92 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.87 Total: 9.96 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -5.06 Total: -13.02 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.25 Total: -41.76 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.93 -9.99 -38.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070021586.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.001 kcal (2) G-P(sol) polarization free energy of solvation -28.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds