Wall clock time and date at job start Tue Mar 31 2020 06:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38351 * 119.87060 * 2 1 4 4 C 1.37990 * 120.12521 * 180.25311 * 3 2 1 5 5 C 1.39409 * 119.86847 * 359.74816 * 4 3 2 6 6 C 1.48293 * 120.12162 * 180.02562 * 5 4 3 7 7 N 1.31361 * 126.51113 * 145.00019 * 6 5 4 8 8 N 1.39775 * 109.08209 * 179.97438 * 7 6 5 9 9 C 1.46494 * 125.16501 * 179.97438 * 8 7 6 10 10 C 1.50708 * 109.46913 * 305.01917 * 9 8 7 11 11 H 1.07998 * 119.99767 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99776 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00298 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99658 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47262 * 90.00246 * 14 12 10 16 16 H 1.48504 * 109.47082 * 209.99957 * 14 12 10 17 17 H 1.48503 * 109.47560 * 330.00314 * 14 12 10 18 18 C 1.34158 * 109.66816 * 0.02562 * 8 7 6 19 19 C 1.37962 * 107.89234 * 359.75644 * 18 8 7 20 20 C 1.47290 * 126.80746 * 180.25917 * 19 18 8 21 21 O 1.21623 * 119.99621 * 180.13034 * 20 19 18 22 22 N 1.34769 * 120.00339 * 0.12839 * 20 19 18 23 23 C 1.47023 * 125.64815 * 359.69489 * 22 20 19 24 24 C 1.54312 * 107.27538 * 180.96341 * 23 22 20 25 25 C 1.55159 * 102.86572 * 22.52662 * 24 23 22 26 26 C 1.47421 * 125.65176 * 179.97438 * 22 20 19 27 27 C 1.39357 * 119.75351 * 359.97438 * 5 4 3 28 28 C 1.38034 * 119.86822 * 0.02562 * 27 5 4 29 29 C 1.50706 * 119.93151 * 179.97438 * 28 27 5 30 30 H 1.08999 * 109.47206 * 270.25350 * 1 2 3 31 31 H 1.09002 * 109.47153 * 30.25361 * 1 2 3 32 32 H 1.09006 * 109.46840 * 150.25534 * 1 2 3 33 33 H 1.07995 * 119.94246 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.06933 * 179.76890 * 4 3 2 35 35 H 1.09001 * 109.47374 * 65.01828 * 9 8 7 36 36 H 1.08999 * 109.47354 * 185.02127 * 9 8 7 37 37 H 0.96999 * 120.00458 * 179.97438 * 13 12 10 38 38 H 1.08005 * 126.05218 * 180.02562 * 18 8 7 39 39 H 1.08994 * 109.88078 * 300.50916 * 23 22 20 40 40 H 1.09002 * 109.88047 * 61.67363 * 23 22 20 41 41 H 1.09002 * 110.92874 * 264.10738 * 24 23 22 42 42 H 1.09006 * 110.58562 * 140.78533 * 24 23 22 43 43 H 1.08993 * 111.00357 * 206.22942 * 25 24 23 44 44 H 1.08997 * 111.03644 * 82.38630 * 25 24 23 45 45 H 1.09006 * 110.36959 * 274.67928 * 26 22 20 46 46 H 1.09006 * 110.36764 * 36.88636 * 26 22 20 47 47 H 1.07999 * 120.06525 * 179.97438 * 27 5 4 48 48 H 1.08999 * 109.47015 * 90.00111 * 29 28 27 49 49 H 1.09000 * 109.46646 * 209.99264 * 29 28 27 50 50 H 1.09000 * 109.47248 * 329.99981 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1997 0.0000 4 6 3.5759 1.2058 -0.0053 5 6 4.2756 0.0000 -0.0053 6 6 5.7585 0.0001 -0.0104 7 7 6.5422 -0.8636 0.5942 8 7 7.8749 -0.5214 0.3484 9 6 9.0403 -1.2491 0.8565 10 6 8.9494 -1.3582 2.3569 11 1 8.1075 -0.9287 2.8795 12 6 9.9412 -2.0062 3.0623 13 7 10.9666 -2.5286 2.4260 14 14 9.8281 -2.1420 4.9219 15 1 9.1019 -3.3857 5.2842 16 1 11.1957 -2.1813 5.4994 17 1 9.0968 -0.9671 5.4606 18 6 7.9246 0.5753 -0.4227 19 6 6.6284 0.9609 -0.6954 20 6 6.2029 2.1111 -1.5111 21 8 5.0188 2.3395 -1.6694 22 7 7.1255 2.9104 -2.0821 23 6 8.5830 2.7542 -1.9682 24 6 9.2310 3.9075 -2.7626 25 6 8.1061 4.9755 -2.8008 26 6 6.8407 4.0897 -2.9197 27 6 3.5762 -1.2053 0.0006 28 6 2.1959 -1.1992 0.0058 29 6 1.4381 -2.5019 0.0116 30 1 -0.3633 0.0045 1.0276 31 1 -0.3633 0.8877 -0.5178 32 1 -0.3633 -0.8923 -0.5099 33 1 1.6530 2.1332 0.0004 34 1 4.1128 2.1428 -0.0090 35 1 9.0637 -2.2478 0.4204 36 1 9.9499 -0.7130 0.5857 37 1 11.6645 -2.9842 2.9223 38 1 8.8208 1.0666 -0.7721 39 1 8.8810 2.8094 -0.9212 40 1 8.8875 1.7974 -2.3925 41 1 9.4928 3.5868 -3.7709 42 1 10.1073 4.2890 -2.2384 43 1 8.2122 5.6237 -3.6706 44 1 8.0895 5.5594 -1.8806 45 1 6.6831 3.7900 -3.9558 46 1 5.9669 4.6209 -2.5422 47 1 4.1131 -2.1424 0.0002 48 1 1.2593 -2.8137 1.0406 49 1 0.4842 -2.3694 -0.4988 50 1 2.0228 -3.2646 -0.5028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071830972.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:55 Heat of formation + Delta-G solvation = 62.670807 kcal Electronic energy + Delta-G solvation = -31064.424650 eV Core-core repulsion = 27057.836870 eV Total energy + Delta-G solvation = -4006.587780 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.74973 -39.33875 -39.02664 -37.08016 -34.14125 -33.23754 -32.03037 -31.94912 -31.16590 -30.12213 -28.69208 -27.77917 -27.01399 -25.98289 -24.31384 -23.11883 -21.90574 -21.68567 -21.33421 -20.29656 -19.85084 -18.49743 -16.89653 -16.56314 -16.43729 -16.26709 -15.38594 -15.27937 -15.14311 -14.63119 -14.39908 -14.16638 -14.11352 -13.86843 -13.66827 -13.56764 -13.04598 -12.91658 -12.70715 -12.58040 -12.54070 -12.44127 -12.21659 -12.12600 -11.89237 -11.77646 -11.51011 -11.38733 -11.27778 -11.07350 -10.95358 -10.92892 -10.78445 -10.67415 -10.35630 -10.10772 -9.83201 -9.46381 -9.07682 -8.72384 -8.55373 -8.34415 -8.13442 -7.62502 -6.35374 -4.41113 1.40412 1.82002 2.08433 2.85640 3.04235 3.18850 3.25117 3.28693 3.37176 3.76839 4.21998 4.24209 4.36594 4.43756 4.74377 4.80504 4.96505 5.01226 5.04986 5.10707 5.12561 5.21963 5.27408 5.31265 5.39221 5.50930 5.55135 5.56986 5.61902 5.65667 5.71454 5.75974 5.77747 5.82198 5.89114 5.91324 5.94555 5.97645 6.03157 6.10347 6.39542 6.40539 6.46066 6.62817 6.73984 6.88043 6.94492 6.98961 7.15508 7.38091 7.52890 7.66770 7.71364 7.75483 8.33814 8.54831 8.66980 9.25668 10.73574 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.005864 B = 0.004257 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4773.603345 B = 6576.341166 C =10707.213064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.057 4.057 5 C -0.012 4.012 6 C 0.140 3.860 7 N -0.262 5.262 8 N -0.312 5.312 9 C 0.250 3.750 10 C -0.533 4.533 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.893 5.893 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.087 3.913 19 C -0.311 4.311 20 C 0.615 3.385 21 O -0.543 6.543 22 N -0.622 5.622 23 C 0.091 3.909 24 C -0.132 4.132 25 C -0.134 4.134 26 C 0.110 3.890 27 C -0.086 4.086 28 C -0.104 4.104 29 C -0.112 4.112 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.269 0.731 38 H 0.184 0.816 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.066 0.934 49 H 0.066 0.934 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 10.886 -10.419 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.076 4.076 5 C -0.014 4.014 6 C -0.027 4.027 7 N -0.082 5.082 8 N -0.088 5.088 9 C 0.134 3.866 10 C -0.571 4.571 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.735 3.265 15 H -0.202 1.202 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.067 4.067 19 C -0.326 4.326 20 C 0.408 3.592 21 O -0.422 6.422 22 N -0.357 5.357 23 C -0.032 4.032 24 C -0.170 4.170 25 C -0.172 4.172 26 C -0.013 4.013 27 C -0.105 4.105 28 C -0.104 4.104 29 C -0.168 4.168 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.200 0.800 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.095 0.905 47 H 0.141 0.859 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.474 9.662 -9.621 16.603 hybrid contribution 0.553 0.524 0.453 0.887 sum -8.920 10.186 -9.168 16.352 Atomic orbital electron populations 1.20830 0.91843 1.02411 1.01949 1.19751 0.95535 0.92801 1.00534 1.20837 0.94007 0.96975 1.02946 1.21495 0.93571 0.98141 0.94428 1.17663 0.87565 0.93653 1.02504 1.21723 0.92656 0.92602 0.95758 1.77458 0.87330 1.22150 1.21295 1.49274 1.06397 1.19485 1.33621 1.19919 0.77956 0.92481 0.96287 1.21201 1.08223 1.37751 0.89913 0.91134 1.24920 0.94677 0.94521 0.99680 1.69902 1.10407 1.36364 1.36466 0.86312 0.77422 0.78973 0.83765 1.20181 1.20894 1.19616 1.23580 0.98656 0.90339 0.94110 1.20837 0.91810 1.04317 1.15682 1.16932 0.84225 0.80371 0.77683 1.90713 1.15905 1.73133 1.62484 1.48276 1.06161 1.29378 1.51890 1.22345 0.80871 0.99263 1.00771 1.22659 0.98269 0.95154 1.00950 1.22796 0.94279 0.97272 1.02888 1.22131 0.98248 0.86039 0.94875 1.21062 0.93177 0.97477 0.98808 1.19517 0.93281 0.94732 1.02899 1.20794 0.99686 0.94278 1.02055 0.91490 0.91929 0.91441 0.86411 0.84223 0.93140 0.92405 0.92175 0.79963 0.90750 0.90984 0.90464 0.89869 0.89989 0.90570 0.91799 0.90461 0.85867 0.91484 0.91544 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.59 36.01 0.35 -0.84 16 2 C -0.09 -1.22 5.88 -104.56 -0.62 -1.83 16 3 C -0.13 -1.98 9.68 -39.63 -0.38 -2.36 16 4 C -0.06 -1.02 7.77 -39.24 -0.30 -1.32 16 5 C -0.01 -0.23 5.73 -104.91 -0.60 -0.83 16 6 C 0.14 2.93 6.94 -80.56 -0.56 2.37 16 7 N -0.26 -6.02 12.27 34.57 0.42 -5.60 16 8 N -0.31 -6.85 3.62 -62.03 -0.22 -7.07 16 9 C 0.25 6.00 6.21 -5.19 -0.03 5.97 16 10 C -0.53 -14.28 9.21 -34.44 -0.32 -14.60 16 11 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 12 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 14 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 18 C 0.09 1.58 9.88 -16.64 -0.16 1.42 16 19 C -0.31 -5.89 6.23 -102.95 -0.64 -6.53 16 20 C 0.61 10.66 7.71 -12.58 -0.10 10.56 16 21 O -0.54 -10.36 12.71 5.26 0.07 -10.29 16 22 N -0.62 -8.40 3.33 -171.83 -0.57 -8.97 16 23 C 0.09 0.97 4.99 -3.07 -0.02 0.95 16 24 C -0.13 -1.01 6.95 -24.90 -0.17 -1.18 16 25 C -0.13 -1.03 7.08 -24.57 -0.17 -1.20 16 26 C 0.11 1.17 6.91 -2.52 -0.02 1.15 16 27 C -0.09 -1.51 9.41 -39.24 -0.37 -1.88 16 28 C -0.10 -1.56 5.87 -104.67 -0.61 -2.18 16 29 C -0.11 -1.30 9.60 36.01 0.35 -0.95 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.07 0.62 5.93 -51.93 -0.31 0.31 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.14 2.59 5.67 -52.49 -0.30 2.29 16 35 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.33 8.05 -51.93 -0.42 0.91 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.18 2.60 4.46 -52.48 -0.23 2.37 16 39 H 0.07 0.80 6.88 -51.93 -0.36 0.45 16 40 H 0.07 0.75 7.01 -51.93 -0.36 0.39 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 47 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 0.65 5.92 -51.93 -0.31 0.34 16 50 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 402.68 15.07 6.07 6.07 Total: -1.00 -31.65 402.68 -10.32 -41.97 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.32 Total: 3.26 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -4.49 Total: -11.65 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.36 Total: -45.26 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.65 -10.32 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071830972.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.642 kcal (2) G-P(sol) polarization free energy of solvation -31.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds