Wall clock time and date at job start Tue Mar 31 2020 06:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 C 1.52999 * 109.46902 * 240.00097 * 2 1 3 5 5 N 1.46499 * 109.47383 * 120.00372 * 2 1 3 6 6 C 1.38651 * 125.98187 * 0.02562 * 5 2 1 7 7 C 1.32888 * 107.91387 * 179.72766 * 6 5 2 8 8 N 1.38650 * 107.91369 * 0.39795 * 7 6 5 9 9 C 1.46500 * 125.98245 * 179.85940 * 8 7 6 10 10 N 1.46902 * 109.47267 * 267.13359 * 9 8 7 11 11 C 1.46893 * 110.99784 * 296.00418 * 10 9 8 12 12 C 1.50701 * 109.47309 * 165.29967 * 11 10 9 13 13 H 1.08000 * 120.00145 * 120.00093 * 12 11 10 14 14 C 1.37875 * 119.99546 * 300.00283 * 12 11 10 15 15 N 1.31522 * 119.99683 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00357 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47224 * 270.00112 * 16 14 12 18 18 H 1.48506 * 109.47292 * 150.00373 * 16 14 12 19 19 H 1.48495 * 109.47049 * 30.00148 * 16 14 12 20 20 C 1.46898 * 110.99969 * 172.05485 * 10 9 8 21 21 C 1.53000 * 109.47020 * 202.13642 * 20 10 9 22 22 H 1.08998 * 110.43257 * 299.52684 * 21 20 10 23 23 C 1.54817 * 110.48927 * 176.84040 * 21 20 10 24 24 C 1.54993 * 102.09230 * 220.44455 * 23 21 20 25 25 O 1.44378 * 103.49251 * 37.02164 * 24 23 21 26 26 C 1.43745 * 106.97460 * 319.93984 * 25 24 23 27 27 C 1.34750 * 125.98692 * 179.97438 * 5 2 1 28 28 S 1.71200 * 125.94611 * 0.02562 * 27 5 2 29 29 H 1.09003 * 109.46925 * 299.99609 * 1 2 3 30 30 H 1.08998 * 109.47206 * 59.99716 * 1 2 3 31 31 H 1.09007 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46828 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47338 * 300.00202 * 3 2 1 34 34 H 1.09003 * 109.46928 * 60.00393 * 3 2 1 35 35 H 1.08995 * 109.47402 * 300.00135 * 4 2 1 36 36 H 1.08998 * 109.47038 * 60.00084 * 4 2 1 37 37 H 1.09003 * 109.46959 * 179.97438 * 4 2 1 38 38 H 1.08001 * 126.04094 * 0.02562 * 6 5 2 39 39 H 1.08001 * 126.04251 * 180.25522 * 7 6 5 40 40 H 1.08994 * 109.47486 * 147.12979 * 9 8 7 41 41 H 1.09010 * 109.47163 * 27.13211 * 9 8 7 42 42 H 1.09003 * 109.46969 * 45.29937 * 11 10 9 43 43 H 1.09001 * 109.47455 * 285.30241 * 11 10 9 44 44 H 0.97000 * 120.00109 * 179.97438 * 15 14 12 45 45 H 1.09003 * 109.46934 * 322.13396 * 20 10 9 46 46 H 1.08999 * 109.47799 * 82.13527 * 20 10 9 47 47 H 1.08999 * 110.90617 * 338.63936 * 23 21 20 48 48 H 1.09002 * 110.90322 * 102.24185 * 23 21 20 49 49 H 1.09007 * 110.61199 * 278.52190 * 24 23 21 50 50 H 1.08998 * 110.75522 * 155.59127 * 24 23 21 51 51 H 1.09001 * 109.87843 * 267.08480 * 26 25 24 52 52 H 1.09006 * 109.87573 * 145.93742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.2322 -1.2622 2.1849 7 6 2.0420 -1.7941 3.0944 8 7 3.3479 -1.5561 2.6941 9 6 4.5568 -1.9704 3.4104 10 7 4.9961 -0.8853 4.2980 11 6 5.3863 0.3014 3.5252 12 6 5.4813 1.4912 4.4454 13 1 6.4172 2.0199 4.5496 14 6 4.3733 1.9046 5.1541 15 7 4.4563 2.9426 5.9575 16 14 2.7543 0.9905 4.9733 17 1 1.9655 1.5943 3.8695 18 1 1.9867 1.0878 6.2409 19 1 3.0235 -0.4371 4.6659 20 6 6.0918 -1.3294 5.1698 21 6 6.1561 -0.4304 6.4062 22 1 6.3403 0.6038 6.1155 23 6 7.2526 -0.9261 7.3802 24 6 6.5695 -0.7416 8.7592 25 8 5.1922 -1.0904 8.5023 26 6 4.8517 -0.5380 7.2197 27 6 3.3104 -0.8826 1.5275 28 16 4.6678 -0.3611 0.6241 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 0.1526 -1.2770 2.2089 39 1 1.7367 -2.3172 3.9887 40 1 5.3457 -2.1945 2.6925 41 1 4.3414 -2.8597 4.0029 42 1 4.6390 0.4959 2.7559 43 1 6.3544 0.1272 3.0556 44 1 3.6767 3.2337 6.4559 45 1 5.9156 -2.3598 5.4786 46 1 7.0353 -1.2690 4.6273 47 1 7.4878 -1.9750 7.1999 48 1 8.1481 -0.3094 7.3040 49 1 6.6478 0.2938 9.0908 50 1 7.0042 -1.4141 9.4987 51 1 4.4117 0.4511 7.3471 52 1 4.1488 -1.1953 6.7078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071856492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:16 Heat of formation + Delta-G solvation = 58.052301 kcal Electronic energy + Delta-G solvation = -32401.270713 eV Core-core repulsion = 28529.926610 eV Total energy + Delta-G solvation = -3871.344102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.188 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49706 -39.00971 -37.82369 -36.39731 -33.14448 -32.29342 -31.35840 -30.43822 -28.80014 -28.18846 -27.53425 -27.27647 -25.74894 -23.88760 -22.63345 -22.17861 -21.67267 -20.92446 -19.99891 -19.40631 -17.68894 -16.80738 -16.22465 -15.91683 -15.72673 -15.59192 -15.22100 -14.94183 -14.76309 -14.51515 -14.24495 -13.84750 -13.80405 -13.60800 -13.37089 -13.06971 -12.58097 -12.47554 -12.37679 -12.30708 -12.15685 -11.99450 -11.74868 -11.52453 -11.44591 -11.18474 -11.07529 -10.92313 -10.88247 -10.78842 -10.44576 -10.27281 -10.24361 -9.91011 -9.90151 -9.74056 -9.36405 -9.07525 -8.97874 -8.38553 -7.27681 -6.93480 -6.62330 -6.02202 -4.00309 1.70418 2.00877 2.08069 2.81364 3.05247 3.38828 3.46997 3.64664 4.36436 4.57659 4.59363 4.61565 4.68490 4.78248 4.84828 4.92234 5.13688 5.23369 5.31860 5.32385 5.35750 5.42217 5.48901 5.54007 5.55037 5.63568 5.68515 5.70254 5.75777 5.78948 5.91349 5.94421 6.01395 6.02941 6.18765 6.23775 6.34838 6.38792 6.49477 6.56515 6.57854 6.61290 6.78439 6.89149 6.99382 7.08004 7.14618 7.27664 7.64178 7.76937 7.85944 8.06798 8.59777 8.97487 9.64324 11.06649 Molecular weight = 353.19amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.004208 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.303716 B = 6652.302864 C = 6890.554759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.177 3.823 3 C -0.177 4.177 4 C -0.171 4.171 5 N -0.453 5.453 6 C -0.027 4.027 7 C 0.013 3.987 8 N -0.443 5.443 9 C 0.277 3.723 10 N -0.544 5.544 11 C 0.144 3.856 12 C -0.508 4.508 13 H 0.068 0.932 14 C 0.088 3.912 15 N -0.899 5.899 16 Si 0.855 3.145 17 H -0.303 1.303 18 H -0.307 1.307 19 H -0.193 1.193 20 C 0.089 3.911 21 C -0.119 4.119 22 H 0.139 0.861 23 C -0.152 4.152 24 C 0.050 3.950 25 O -0.396 6.396 26 C 0.064 3.936 27 C 0.465 3.535 28 S -0.627 6.627 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.188 0.812 39 H 0.189 0.811 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.014 0.986 44 H 0.260 0.740 45 H 0.050 0.950 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.061 0.939 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -11.926 -5.691 15.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.095 3.905 3 C -0.235 4.235 4 C -0.230 4.230 5 N -0.144 5.144 6 C -0.156 4.156 7 C -0.117 4.117 8 N -0.132 5.132 9 C 0.067 3.933 10 N -0.271 5.271 11 C 0.020 3.980 12 C -0.546 4.546 13 H 0.086 0.914 14 C -0.116 4.116 15 N -0.536 5.536 16 Si 0.684 3.316 17 H -0.232 1.232 18 H -0.235 1.235 19 H -0.115 1.115 20 C -0.039 4.039 21 C -0.138 4.138 22 H 0.157 0.843 23 C -0.191 4.191 24 C -0.027 4.027 25 O -0.315 6.315 26 C -0.012 4.012 27 C 0.107 3.893 28 S -0.494 6.494 29 H 0.085 0.915 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.205 0.795 39 H 0.206 0.794 40 H 0.093 0.907 41 H 0.113 0.887 42 H 0.077 0.923 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.053 0.947 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.074 0.926 50 H 0.098 0.902 51 H 0.079 0.921 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.413 -11.478 -5.773 14.834 hybrid contribution -1.135 -0.430 0.188 1.228 sum -8.548 -11.908 -5.585 15.686 Atomic orbital electron populations 1.22188 0.92622 1.02884 1.03755 1.20831 0.94248 0.93388 0.82033 1.22439 1.06630 0.92249 1.02222 1.22405 1.06348 0.99327 0.94918 1.45643 1.04297 1.44477 1.19988 1.22170 0.98780 1.03604 0.91040 1.22211 0.82291 1.05814 1.01388 1.45538 1.07676 1.43136 1.16875 1.22312 0.83479 0.94458 0.93067 1.63328 1.37513 1.04672 1.21619 1.20750 0.96983 0.86781 0.93486 1.20889 0.98055 1.10384 1.25265 0.91424 1.24927 0.98991 0.93814 0.93832 1.69974 1.30373 1.25528 1.27758 0.87518 0.82487 0.85801 0.75785 1.23176 1.23450 1.11476 1.21766 0.92046 0.96240 0.93837 1.22968 0.92612 1.05008 0.93177 0.84317 1.23197 0.99285 1.01064 0.95512 1.23414 0.82591 0.99813 0.96895 1.88749 1.27626 1.77254 1.37892 1.23146 0.97613 0.98564 0.81883 1.22769 0.89640 0.89238 0.87687 1.93093 1.26280 1.70980 1.59059 0.91510 0.89933 0.91621 0.87641 0.90990 0.92383 0.92838 0.90980 0.87865 0.79494 0.79374 0.90748 0.88749 0.92336 0.96718 0.93082 0.93174 0.94669 0.91705 0.90843 0.92579 0.90229 0.92066 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 7.37 37.16 0.27 -1.13 16 2 C 0.18 2.24 1.06 -131.82 -0.14 2.10 16 3 C -0.18 -2.60 8.49 37.16 0.32 -2.28 16 4 C -0.17 -2.03 8.49 37.16 0.32 -1.72 16 5 N -0.45 -6.72 2.65 -104.05 -0.28 -7.00 16 6 C -0.03 -0.33 10.36 -16.31 -0.17 -0.50 16 7 C 0.01 0.17 8.78 -16.31 -0.14 0.02 16 8 N -0.44 -7.16 1.96 -121.27 -0.24 -7.40 16 9 C 0.28 4.44 5.35 -63.31 -0.34 4.10 16 10 N -0.54 -10.38 1.16 -239.98 -0.28 -10.65 16 11 C 0.14 3.35 3.38 -4.98 -0.02 3.34 16 12 C -0.51 -13.71 6.72 -34.44 -0.23 -13.94 16 13 H 0.07 2.03 8.01 -52.49 -0.42 1.61 16 14 C 0.09 2.41 3.83 -17.82 -0.07 2.34 16 15 N -0.90 -26.65 13.96 55.43 0.77 -25.87 16 16 Si 0.86 20.57 22.76 -169.99 -3.87 16.70 16 17 H -0.30 -7.82 7.11 56.52 0.40 -7.41 16 18 H -0.31 -7.77 7.11 56.52 0.40 -7.37 16 19 H -0.19 -3.91 2.41 56.52 0.14 -3.77 16 20 C 0.09 1.57 4.19 -3.82 -0.02 1.55 16 21 C -0.12 -2.31 2.51 -89.09 -0.22 -2.53 16 22 H 0.14 3.29 4.92 -51.93 -0.26 3.03 16 23 C -0.15 -2.43 6.71 -24.72 -0.17 -2.59 16 24 C 0.05 0.81 7.72 38.21 0.29 1.10 16 25 O -0.40 -7.70 11.52 -35.23 -0.41 -8.10 16 26 C 0.06 1.31 5.38 37.73 0.20 1.51 16 27 C 0.46 8.26 6.02 -86.96 -0.52 7.74 16 28 S -0.63 -13.04 22.88 -107.50 -2.46 -15.50 16 29 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.49 7.87 -51.93 -0.41 0.08 16 32 H 0.11 1.91 5.78 -51.93 -0.30 1.60 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 1.54 5.78 -51.93 -0.30 1.24 16 38 H 0.19 1.54 7.23 -52.49 -0.38 1.17 16 39 H 0.19 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.07 1.25 7.71 -51.93 -0.40 0.85 16 41 H 0.09 1.20 7.86 -51.92 -0.41 0.79 16 42 H 0.06 1.44 3.50 -45.37 -0.16 1.29 16 43 H 0.01 0.36 7.82 -51.93 -0.41 -0.05 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.05 0.76 7.72 -51.93 -0.40 0.36 16 46 H 0.04 0.63 7.75 -51.93 -0.40 0.23 16 47 H 0.06 0.92 7.87 -51.93 -0.41 0.51 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 51 H 0.06 1.46 6.31 -51.93 -0.33 1.14 16 52 H 0.08 1.53 6.96 -51.93 -0.36 1.17 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -33.78 382.36 -10.58 -44.36 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -8.95 Total: 8.61 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -0.63 Total: -0.89 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: -0.02 Total: -50.93 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.41 Total: -8.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -3.87 Total: 16.70 kcal Atomic # 16 Polarization: -13.04 SS G_CDS: -2.46 Total: -15.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.78 -10.58 -44.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071856492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.408 kcal (2) G-P(sol) polarization free energy of solvation -33.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds