Wall clock time and date at job start Tue Mar 31 2020 06:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47069 * 2 1 4 4 C 1.52999 * 109.46902 * 240.00097 * 2 1 3 5 5 N 1.46499 * 109.47383 * 120.00372 * 2 1 3 6 6 C 1.38651 * 125.98187 * 0.02562 * 5 2 1 7 7 C 1.32888 * 107.91387 * 179.72766 * 6 5 2 8 8 N 1.38650 * 107.91369 * 0.39795 * 7 6 5 9 9 C 1.46500 * 125.98245 * 179.85940 * 8 7 6 10 10 N 1.46902 * 109.47267 * 267.13359 * 9 8 7 11 11 C 1.46893 * 110.99784 * 296.00418 * 10 9 8 12 12 C 1.50701 * 109.47309 * 165.29967 * 11 10 9 13 13 H 1.08000 * 120.00145 * 120.00093 * 12 11 10 14 14 C 1.37875 * 119.99546 * 300.00283 * 12 11 10 15 15 N 1.31522 * 119.99683 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00357 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47224 * 270.00112 * 16 14 12 18 18 H 1.48506 * 109.47292 * 150.00373 * 16 14 12 19 19 H 1.48495 * 109.47049 * 30.00148 * 16 14 12 20 20 C 1.46898 * 110.99969 * 172.05485 * 10 9 8 21 21 C 1.53000 * 109.47020 * 202.13642 * 20 10 9 22 22 H 1.08998 * 110.43257 * 299.52684 * 21 20 10 23 23 C 1.54817 * 110.48927 * 176.84040 * 21 20 10 24 24 C 1.54993 * 102.09230 * 220.44455 * 23 21 20 25 25 O 1.44378 * 103.49251 * 37.02164 * 24 23 21 26 26 C 1.43745 * 106.97460 * 319.93984 * 25 24 23 27 27 C 1.34750 * 125.98692 * 179.97438 * 5 2 1 28 28 S 1.71200 * 125.94611 * 0.02562 * 27 5 2 29 29 H 1.09003 * 109.46925 * 299.99609 * 1 2 3 30 30 H 1.08998 * 109.47206 * 59.99716 * 1 2 3 31 31 H 1.09007 * 109.47004 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46828 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47338 * 300.00202 * 3 2 1 34 34 H 1.09003 * 109.46928 * 60.00393 * 3 2 1 35 35 H 1.08995 * 109.47402 * 300.00135 * 4 2 1 36 36 H 1.08998 * 109.47038 * 60.00084 * 4 2 1 37 37 H 1.09003 * 109.46959 * 179.97438 * 4 2 1 38 38 H 1.08001 * 126.04094 * 0.02562 * 6 5 2 39 39 H 1.08001 * 126.04251 * 180.25522 * 7 6 5 40 40 H 1.08994 * 109.47486 * 147.12979 * 9 8 7 41 41 H 1.09010 * 109.47163 * 27.13211 * 9 8 7 42 42 H 1.09003 * 109.46969 * 45.29937 * 11 10 9 43 43 H 1.09001 * 109.47455 * 285.30241 * 11 10 9 44 44 H 0.97000 * 120.00109 * 179.97438 * 15 14 12 45 45 H 1.09003 * 109.46934 * 322.13396 * 20 10 9 46 46 H 1.08999 * 109.47799 * 82.13527 * 20 10 9 47 47 H 1.08999 * 110.90617 * 338.63936 * 23 21 20 48 48 H 1.09002 * 110.90322 * 102.24185 * 23 21 20 49 49 H 1.09007 * 110.61199 * 278.52190 * 24 23 21 50 50 H 1.08998 * 110.75522 * 155.59127 * 24 23 21 51 51 H 1.09001 * 109.87843 * 267.08480 * 26 25 24 52 52 H 1.09006 * 109.87573 * 145.93742 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1961 6 6 1.2322 -1.2622 2.1849 7 6 2.0420 -1.7941 3.0944 8 7 3.3479 -1.5561 2.6941 9 6 4.5568 -1.9704 3.4104 10 7 4.9961 -0.8853 4.2980 11 6 5.3863 0.3014 3.5252 12 6 5.4813 1.4912 4.4454 13 1 6.4172 2.0199 4.5496 14 6 4.3733 1.9046 5.1541 15 7 4.4563 2.9426 5.9575 16 14 2.7543 0.9905 4.9733 17 1 1.9655 1.5943 3.8695 18 1 1.9867 1.0878 6.2409 19 1 3.0235 -0.4371 4.6659 20 6 6.0918 -1.3294 5.1698 21 6 6.1561 -0.4304 6.4062 22 1 6.3403 0.6038 6.1155 23 6 7.2526 -0.9261 7.3802 24 6 6.5695 -0.7416 8.7592 25 8 5.1922 -1.0904 8.5023 26 6 4.8517 -0.5380 7.2197 27 6 3.3104 -0.8826 1.5275 28 16 4.6678 -0.3611 0.6241 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2495 38 1 0.1526 -1.2770 2.2089 39 1 1.7367 -2.3172 3.9887 40 1 5.3457 -2.1945 2.6925 41 1 4.3414 -2.8597 4.0029 42 1 4.6390 0.4959 2.7559 43 1 6.3544 0.1272 3.0556 44 1 3.6767 3.2337 6.4559 45 1 5.9156 -2.3598 5.4786 46 1 7.0353 -1.2690 4.6273 47 1 7.4878 -1.9750 7.1999 48 1 8.1481 -0.3094 7.3040 49 1 6.6478 0.2938 9.0908 50 1 7.0042 -1.4141 9.4987 51 1 4.4117 0.4511 7.3471 52 1 4.1488 -1.1953 6.7078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071856492.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:15 Heat of formation + Delta-G solvation = 36.810142 kcal Electronic energy + Delta-G solvation = -32402.191842 eV Core-core repulsion = 28529.926610 eV Total energy + Delta-G solvation = -3872.265232 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.66671 -40.50118 -39.06433 -37.76031 -34.73491 -34.06305 -32.79534 -31.49519 -30.33427 -29.91527 -28.44710 -28.33182 -27.12415 -25.48712 -23.89273 -23.78037 -22.87063 -22.32466 -21.22308 -20.94109 -19.00782 -18.54610 -17.80478 -17.30276 -17.12018 -16.86771 -16.48602 -16.41943 -15.99213 -15.96929 -15.73490 -15.22017 -15.18143 -14.76186 -14.70376 -14.43096 -14.15001 -13.71380 -13.62348 -13.33018 -13.30316 -13.19311 -13.07463 -12.92340 -12.72982 -12.59616 -12.39210 -12.34072 -12.26527 -12.13402 -12.05585 -11.92319 -11.83332 -11.61949 -11.42046 -11.25808 -11.09686 -10.66864 -10.53373 -10.34658 -8.92066 -8.44399 -8.21431 -8.13536 -6.21863 0.39539 0.80949 1.06628 1.38895 1.42019 1.51644 1.68571 1.99001 2.54719 2.97546 3.16691 3.39571 3.42322 3.74734 3.76200 3.85129 3.92286 3.93665 4.06261 4.11700 4.22240 4.29056 4.31025 4.40472 4.46225 4.54023 4.61101 4.62073 4.70138 4.74391 4.77229 4.79799 4.85568 4.87744 4.91757 4.92875 5.02520 5.07346 5.10005 5.12699 5.22106 5.32211 5.34963 5.43347 5.48532 5.66662 5.67426 5.71916 5.95671 6.07083 6.13822 6.31221 6.54301 6.75826 7.45045 8.91187 Molecular weight = 353.19amu Principal moments of inertia in cm(-1) A = 0.015966 B = 0.004208 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.303716 B = 6652.302864 C = 6890.554759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.168 3.832 3 C -0.175 4.175 4 C -0.163 4.163 5 N -0.447 5.447 6 C -0.019 4.019 7 C -0.001 4.001 8 N -0.446 5.446 9 C 0.274 3.726 10 N -0.549 5.549 11 C 0.172 3.828 12 C -0.504 4.504 13 H 0.016 0.984 14 C 0.042 3.958 15 N -0.947 5.947 16 Si 0.910 3.090 17 H -0.323 1.323 18 H -0.320 1.320 19 H -0.132 1.132 20 C 0.092 3.908 21 C -0.122 4.122 22 H 0.086 0.914 23 C -0.142 4.142 24 C 0.045 3.955 25 O -0.402 6.402 26 C 0.074 3.926 27 C 0.451 3.549 28 S -0.717 6.717 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.236 0.764 39 H 0.234 0.766 40 H 0.065 0.935 41 H 0.149 0.851 42 H 0.051 0.949 43 H -0.009 1.009 44 H 0.255 0.745 45 H 0.097 0.903 46 H 0.031 0.969 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.040 0.960 50 H 0.119 0.881 51 H 0.016 0.984 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.054 -16.558 -5.336 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.087 3.913 3 C -0.233 4.233 4 C -0.222 4.222 5 N -0.136 5.136 6 C -0.147 4.147 7 C -0.129 4.129 8 N -0.134 5.134 9 C 0.064 3.936 10 N -0.275 5.275 11 C 0.046 3.954 12 C -0.543 4.543 13 H 0.034 0.966 14 C -0.156 4.156 15 N -0.587 5.587 16 Si 0.739 3.261 17 H -0.253 1.253 18 H -0.249 1.249 19 H -0.052 1.052 20 C -0.035 4.035 21 C -0.141 4.141 22 H 0.104 0.896 23 C -0.180 4.180 24 C -0.031 4.031 25 O -0.322 6.322 26 C -0.002 4.002 27 C 0.089 3.911 28 S -0.585 6.585 29 H 0.085 0.915 30 H 0.121 0.879 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.054 0.946 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.252 0.748 39 H 0.250 0.750 40 H 0.083 0.917 41 H 0.167 0.833 42 H 0.069 0.931 43 H 0.009 0.991 44 H 0.064 0.936 45 H 0.115 0.885 46 H 0.049 0.951 47 H 0.115 0.885 48 H 0.093 0.907 49 H 0.058 0.942 50 H 0.137 0.863 51 H 0.034 0.966 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.709 -16.141 -5.427 20.116 hybrid contribution -0.066 1.070 0.080 1.075 sum -10.775 -15.071 -5.347 19.283 Atomic orbital electron populations 1.22199 0.88815 1.04845 1.04826 1.21143 0.96892 0.91556 0.81694 1.22378 1.04083 0.94452 1.02421 1.22297 1.04028 1.00328 0.95541 1.45989 1.03622 1.43157 1.20810 1.23124 1.00797 1.01463 0.89302 1.23148 0.80404 1.06208 1.03118 1.45671 1.09147 1.42391 1.16229 1.22565 0.83624 0.94428 0.92960 1.62891 1.38064 1.04935 1.21653 1.20227 0.95637 0.87346 0.92208 1.20933 0.96055 1.11750 1.25534 0.96595 1.25607 1.02370 0.94435 0.93168 1.70128 1.31006 1.27956 1.29626 0.86832 0.77356 0.87918 0.74010 1.25291 1.24895 1.05221 1.21809 0.91367 0.97946 0.92416 1.22730 0.93761 1.02764 0.94844 0.89637 1.23157 0.98030 1.02835 0.93988 1.23635 0.81404 1.00084 0.98028 1.88735 1.29350 1.76786 1.37285 1.22912 0.98009 0.96552 0.82776 1.22223 0.89726 0.90682 0.88441 1.93211 1.29362 1.74315 1.61593 0.91521 0.87925 0.89111 0.91588 0.88239 0.94646 0.91540 0.88720 0.91418 0.74806 0.75012 0.91689 0.83338 0.93127 0.99070 0.93648 0.88522 0.95117 0.88460 0.90680 0.94201 0.86303 0.96579 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 7.37 71.98 0.53 -1.46 16 2 C 0.17 3.88 1.06 3.60 0.00 3.88 16 3 C -0.17 -5.15 8.49 71.98 0.61 -4.53 16 4 C -0.16 -3.59 8.49 71.98 0.61 -2.98 16 5 N -0.45 -12.07 2.65 -483.11 -1.28 -13.35 16 6 C -0.02 -0.37 10.36 82.44 0.85 0.49 16 7 C 0.00 -0.01 8.78 82.44 0.72 0.71 16 8 N -0.45 -12.96 1.96 -537.58 -1.06 -14.02 16 9 C 0.27 7.80 5.35 170.81 0.91 8.72 16 10 N -0.55 -20.02 1.16 -913.16 -1.06 -21.08 16 11 C 0.17 8.29 3.38 85.56 0.29 8.58 16 12 C -0.50 -29.12 6.72 25.60 0.17 -28.95 16 13 H 0.02 1.05 8.01 -2.91 -0.02 1.02 16 14 C 0.04 2.45 3.83 84.65 0.32 2.77 16 15 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 16 Si 0.91 43.10 22.76 68.60 1.56 44.66 16 17 H -0.32 -16.39 7.11 99.48 0.71 -15.68 16 18 H -0.32 -15.86 7.11 99.48 0.71 -15.16 16 19 H -0.13 -4.87 2.41 99.48 0.24 -4.63 16 20 C 0.09 3.04 4.19 86.30 0.36 3.40 16 21 C -0.12 -4.67 2.51 -9.80 -0.02 -4.69 16 22 H 0.09 4.28 4.92 -2.39 -0.01 4.27 16 23 C -0.14 -4.24 6.71 31.90 0.21 -4.03 16 24 C 0.04 1.36 7.72 72.66 0.56 1.93 16 25 O -0.40 -14.73 11.52 -148.98 -1.72 -16.44 16 26 C 0.07 2.94 5.38 72.35 0.39 3.32 16 27 C 0.45 15.52 6.02 179.07 1.08 16.60 16 28 S -0.72 -31.26 22.88 -56.49 -1.29 -32.55 16 29 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 30 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 0.80 7.87 -2.38 -0.02 0.78 16 32 H 0.07 2.53 5.78 -2.39 -0.01 2.51 16 33 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.06 5.78 -2.39 -0.01 2.04 16 38 H 0.24 2.14 7.23 -2.91 -0.02 2.12 16 39 H 0.23 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.07 2.06 7.71 -2.39 -0.02 2.04 16 41 H 0.15 2.75 7.86 -2.38 -0.02 2.73 16 42 H 0.05 2.58 3.50 -6.56 -0.02 2.56 16 43 H -0.01 -0.47 7.82 -2.39 -0.02 -0.49 16 44 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 45 H 0.10 2.38 7.72 -2.39 -0.02 2.36 16 46 H 0.03 1.06 7.75 -2.39 -0.02 1.04 16 47 H 0.10 2.32 7.87 -2.39 -0.02 2.30 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.12 2.72 8.14 -2.39 -0.02 2.71 16 51 H 0.02 0.78 6.31 -2.39 -0.02 0.77 16 52 H 0.09 3.30 6.96 -2.38 -0.02 3.29 16 Total: -1.00 -86.58 382.36 3.49 -83.09 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.42 Total: 25.59 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 7.61 Total: 3.75 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -3.10 Total: -108.11 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.72 Total: -16.44 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.56 Total: 44.66 kcal Atomic # 16 Polarization: -31.26 SS G_CDS: -1.29 Total: -32.55 kcal Total: -86.58 3.49 -83.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071856492.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.898 kcal (2) G-P(sol) polarization free energy of solvation -86.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds