Wall clock time and date at job start Tue Mar 31 2020 05:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86801 * 119.99738 * 2 1 4 4 H 1.48505 * 109.46718 * 269.99806 * 3 2 1 5 5 H 1.48504 * 109.47229 * 29.99621 * 3 2 1 6 6 H 1.48496 * 109.47124 * 150.00308 * 3 2 1 7 7 C 1.39939 * 120.00321 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00133 * 196.86573 * 7 2 1 9 9 C 1.41436 * 119.99810 * 16.86160 * 7 2 1 10 10 C 1.40790 * 120.17682 * 205.32151 * 9 7 2 11 11 C 1.37704 * 120.03900 * 179.97438 * 10 9 7 12 12 C 1.38371 * 120.41483 * 359.79079 * 11 10 9 13 13 C 1.39884 * 120.35686 * 0.47042 * 12 11 10 14 14 C 1.47879 * 120.02592 * 179.78225 * 13 12 11 15 15 O 1.21550 * 120.00135 * 144.57492 * 14 13 12 16 16 N 1.34776 * 120.00205 * 324.58126 * 14 13 12 17 17 C 1.46926 * 120.63315 * 174.26076 * 16 14 13 18 18 C 1.53197 * 108.77797 * 126.36423 * 17 16 14 19 19 C 1.53040 * 109.31085 * 54.63656 * 18 17 16 20 20 N 1.46501 * 109.46350 * 178.62753 * 19 18 17 21 21 C 1.39047 * 120.00233 * 205.02694 * 20 19 18 22 22 C 1.39481 * 120.15605 * 359.72797 * 21 20 19 23 23 C 1.38559 * 117.89902 * 179.71646 * 22 21 20 24 24 C 1.38811 * 118.04337 * 0.56729 * 23 22 21 25 25 N 1.31796 * 120.01310 * 359.68398 * 24 23 22 26 26 N 1.28343 * 122.28225 * 0.02562 * 25 24 23 27 27 C 1.53041 * 109.53757 * 298.63586 * 19 18 17 28 28 C 1.46929 * 120.62964 * 354.23266 * 16 14 13 29 29 C 1.39029 * 119.94852 * 359.50726 * 13 12 11 30 30 H 0.96996 * 120.00636 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.97740 * 0.02863 * 10 9 7 32 32 H 1.08004 * 119.79599 * 180.02562 * 11 10 9 33 33 H 1.08000 * 119.82160 * 180.22910 * 12 11 10 34 34 H 1.09003 * 109.58852 * 6.58039 * 17 16 14 35 35 H 1.08996 * 109.70784 * 246.22524 * 17 16 14 36 36 H 1.08997 * 109.49793 * 294.68449 * 18 17 16 37 37 H 1.08995 * 109.49739 * 174.58754 * 18 17 16 38 38 H 1.09003 * 109.45792 * 58.65434 * 19 18 17 39 39 H 0.97001 * 119.99538 * 25.03150 * 20 19 18 40 40 H 1.08003 * 121.04801 * 359.97438 * 22 21 20 41 41 H 1.08006 * 120.97867 * 180.27350 * 23 22 21 42 42 H 1.07993 * 119.99694 * 179.71084 * 24 23 22 43 43 H 1.09001 * 109.49821 * 181.31653 * 27 19 18 44 44 H 1.08997 * 109.49992 * 301.40980 * 27 19 18 45 45 H 1.09002 * 109.58570 * 353.42480 * 28 16 14 46 46 H 1.09003 * 109.58143 * 113.84957 * 28 16 14 47 47 H 1.07999 * 120.20266 * 180.27389 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4002 5 1 1.4396 2.6527 0.7000 6 1 3.5398 1.4403 0.6999 7 6 2.0081 -1.2119 0.0005 8 1 3.0532 -1.2318 0.2719 9 6 1.3465 -2.4106 -0.3542 10 6 1.8170 -3.6475 0.1263 11 6 1.1704 -4.8128 -0.2205 12 6 0.0543 -4.7781 -1.0376 13 6 -0.4245 -3.5591 -1.5290 14 6 -1.6152 -3.5310 -2.4056 15 8 -2.4038 -2.6092 -2.3302 16 7 -1.8259 -4.5276 -3.2881 17 6 -3.0647 -4.5800 -4.0764 18 6 -2.7006 -4.6829 -5.5609 19 6 -1.7702 -5.8796 -5.7720 20 7 -1.4461 -6.0008 -7.1955 21 6 -1.0784 -7.2339 -7.7224 22 6 -1.0116 -8.3566 -6.8973 23 6 -0.6460 -9.5630 -7.4724 24 6 -0.3573 -9.5778 -8.8301 25 7 -0.4410 -8.4668 -9.5341 26 7 -0.7845 -7.3470 -9.0093 27 6 -0.4820 -5.6738 -4.9718 28 6 -0.8210 -5.5820 -3.4806 29 6 0.2164 -2.3734 -1.1880 30 1 -0.4851 0.8400 -0.0004 31 1 2.6851 -3.6823 0.7679 32 1 1.5345 -5.7595 0.1507 33 1 -0.4476 -5.6976 -1.3005 34 1 -3.6457 -3.6738 -3.9048 35 1 -3.6508 -5.4508 -3.7827 36 1 -2.1958 -3.7697 -5.8759 37 1 -3.6078 -4.8192 -6.1494 38 1 -2.2664 -6.7893 -5.4338 39 1 -1.4879 -5.2207 -7.7705 40 1 -1.2418 -8.2885 -5.8443 41 1 -0.5828 -10.4644 -6.8808 42 1 -0.0645 -10.5000 -9.3098 43 1 0.1898 -6.5153 -5.1410 44 1 0.0019 -4.7513 -5.2923 45 1 0.0785 -5.3371 -2.9157 46 1 -1.2220 -6.5359 -3.1377 47 1 -0.1524 -1.4296 -1.5615 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071863386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:48 Heat of formation + Delta-G solvation = 56.352247 kcal Electronic energy + Delta-G solvation = -30261.117184 eV Core-core repulsion = 26216.140978 eV Total energy + Delta-G solvation = -4044.976206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 352.164 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.17439 -40.07710 -38.16296 -37.04344 -35.60572 -33.86416 -33.25805 -32.51272 -31.42157 -30.19099 -29.62966 -29.40162 -25.53318 -25.50865 -24.75980 -23.43168 -23.38432 -21.99993 -21.05305 -20.63958 -19.03557 -18.19151 -17.68011 -17.49334 -16.67304 -16.14563 -15.87887 -15.43490 -15.23143 -15.11202 -14.94518 -14.82845 -14.43147 -14.26704 -13.83331 -13.65439 -13.38805 -13.13810 -12.92623 -12.75335 -12.51973 -12.26732 -12.01865 -11.79232 -11.72371 -11.42571 -11.39177 -11.21140 -11.09991 -10.84391 -10.77359 -10.71500 -10.46251 -10.40363 -10.13788 -9.78305 -9.75867 -9.29800 -9.02627 -8.46937 -8.31930 -7.67718 -7.56155 -6.84598 -4.48078 0.62732 0.98615 2.20624 2.65009 2.74346 3.03557 3.06721 3.09013 3.26555 3.47388 3.64464 3.86757 4.14279 4.32121 4.45383 4.45892 4.50776 4.55113 4.59266 4.77835 4.87424 4.92531 5.10598 5.18190 5.37042 5.42947 5.45277 5.50039 5.51979 5.62552 5.69765 5.84642 5.86114 5.91688 5.92627 6.06053 6.08973 6.23796 6.62006 6.68043 6.77788 6.91955 6.96985 7.14159 7.21618 7.31015 7.57366 7.69267 7.79060 7.91433 8.09561 8.43222 8.66365 8.72931 8.75303 8.78932 10.09362 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002247 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.426386 B =12459.543289 C =12661.993271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.102 3.898 10 C -0.212 4.212 11 C -0.096 4.096 12 C -0.227 4.227 13 C -0.122 4.122 14 C 0.569 3.431 15 O -0.539 6.539 16 N -0.618 5.618 17 C 0.117 3.883 18 C -0.139 4.139 19 C 0.153 3.847 20 N -0.708 5.708 21 C 0.347 3.653 22 C -0.183 4.183 23 C -0.078 4.078 24 C -0.023 4.023 25 N -0.204 5.204 26 N -0.313 5.313 27 C -0.152 4.152 28 C 0.097 3.903 29 C -0.099 4.099 30 H 0.285 0.715 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.409 0.591 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.167 0.833 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.063 0.937 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 -15.329 -10.954 19.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.232 4.232 11 C -0.115 4.115 12 C -0.247 4.247 13 C -0.125 4.125 14 C 0.361 3.639 15 O -0.416 6.416 16 N -0.353 5.353 17 C -0.007 4.007 18 C -0.178 4.178 19 C 0.048 3.952 20 N -0.340 5.340 21 C 0.106 3.894 22 C -0.216 4.216 23 C -0.106 4.106 24 C -0.192 4.192 25 N -0.045 5.045 26 N -0.165 5.165 27 C -0.191 4.191 28 C -0.026 4.026 29 C -0.119 4.119 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.245 0.755 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.184 0.816 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.141 0.859 46 H 0.081 0.919 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.936 -13.884 -12.149 18.864 hybrid contribution 0.175 0.139 1.264 1.284 sum -3.761 -13.745 -10.885 17.932 Atomic orbital electron populations 1.69798 1.07489 1.29818 1.33415 1.25982 0.94798 1.01560 0.92387 0.86273 0.80407 0.80448 0.79435 1.19177 1.20169 1.18532 1.19609 0.97891 0.90911 1.40404 0.90043 1.17587 0.91130 0.92490 0.88890 1.21105 1.03554 0.92818 1.05708 1.20455 0.96074 0.96737 0.98212 1.20495 1.01173 0.94967 1.08038 1.19393 0.96223 0.95398 1.01503 1.19002 0.85983 0.80023 0.78930 1.90714 1.47512 1.34179 1.69240 1.48009 1.19035 1.26998 1.41249 1.21401 0.87291 1.03487 0.88500 1.22186 0.99715 0.98102 0.97823 1.21129 0.95687 0.99422 0.79007 1.44624 1.72820 1.07042 1.09490 1.20110 0.90426 0.87456 0.91443 1.21910 1.05415 0.92497 1.01827 1.22222 0.94092 0.98456 0.95868 1.23978 1.03043 0.99302 0.92884 1.72735 1.06139 0.94817 1.30779 1.72992 1.17023 1.17810 1.08718 1.22506 0.97322 1.03484 0.95825 1.22271 0.94689 0.90490 0.95161 1.21524 0.96994 0.95748 0.97643 0.90376 0.88623 0.88851 0.88315 0.88416 0.91727 0.90482 0.90144 0.89908 0.75465 0.83545 0.83467 0.81556 0.90640 0.90576 0.85910 0.91913 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.36 10.95 55.55 0.61 -19.75 16 2 C 0.07 1.78 5.15 -17.34 -0.09 1.69 16 3 Si 0.91 18.38 29.59 -169.99 -5.03 13.35 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.46 -11.72 9.05 -37.73 -0.34 -12.07 16 8 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 9 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 10 C -0.21 -4.82 9.78 -38.81 -0.38 -5.20 16 11 C -0.10 -1.94 10.01 -39.73 -0.40 -2.33 16 12 C -0.23 -4.45 7.36 -38.92 -0.29 -4.74 16 13 C -0.12 -2.72 5.28 -105.04 -0.56 -3.27 16 14 C 0.57 11.74 7.38 -12.31 -0.09 11.65 16 15 O -0.54 -12.99 16.23 5.32 0.09 -12.90 16 16 N -0.62 -9.30 2.97 -173.86 -0.52 -9.82 16 17 C 0.12 1.40 6.44 -3.71 -0.02 1.38 16 18 C -0.14 -1.31 5.55 -26.61 -0.15 -1.45 16 19 C 0.15 1.32 2.11 -67.89 -0.14 1.18 16 20 N -0.71 -6.55 5.25 -53.76 -0.28 -6.83 16 21 C 0.35 3.67 7.73 -154.77 -1.20 2.47 16 22 C -0.18 -1.52 8.92 -39.00 -0.35 -1.87 16 23 C -0.08 -0.55 10.20 -39.25 -0.40 -0.95 16 24 C -0.02 -0.19 11.31 -17.36 -0.20 -0.39 16 25 N -0.20 -2.49 11.49 30.57 0.35 -2.13 16 26 N -0.31 -4.02 11.53 31.23 0.36 -3.66 16 27 C -0.15 -1.54 5.60 -26.61 -0.15 -1.69 16 28 C 0.10 1.18 4.77 -3.71 -0.02 1.16 16 29 C -0.10 -2.53 8.24 -38.44 -0.32 -2.84 16 30 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 31 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 32 H 0.09 1.58 8.06 -52.48 -0.42 1.15 16 33 H 0.10 1.63 6.03 -52.49 -0.32 1.31 16 34 H 0.10 1.36 7.00 -51.93 -0.36 1.00 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.62 6.51 -51.93 -0.34 0.29 16 39 H 0.41 3.70 8.73 -40.82 -0.36 3.34 16 40 H 0.15 0.95 6.27 -52.48 -0.33 0.62 16 41 H 0.15 0.53 8.06 -52.48 -0.42 0.11 16 42 H 0.17 0.88 8.06 -52.49 -0.42 0.45 16 43 H 0.08 0.69 7.72 -51.93 -0.40 0.29 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.12 1.76 4.46 -51.93 -0.23 1.53 16 46 H 0.06 0.62 8.05 -51.93 -0.42 0.21 16 47 H 0.13 3.55 6.12 -52.49 -0.32 3.23 16 LS Contribution 381.67 15.07 5.75 5.75 Total: -1.00 -31.21 381.67 -10.35 -41.56 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.01 Total: 9.71 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -5.67 Total: -15.29 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.52 Total: -42.19 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.09 Total: -12.90 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.21 -10.35 -41.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071863386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.912 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds