Wall clock time and date at job start Tue Mar 31 2020 06:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39861 * 125.90135 * 2 1 4 4 C 1.35319 * 107.92562 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.13261 * 179.97438 * 4 3 2 6 6 N 1.34947 * 107.74317 * 0.02562 * 4 3 2 7 7 C 1.46497 * 126.03880 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.49882 * 0.05873 * 7 6 4 9 9 C 1.53042 * 109.49646 * 239.99884 * 7 6 4 10 10 C 1.53042 * 109.53913 * 178.68048 * 9 7 6 11 11 C 1.53198 * 109.31032 * 61.36607 * 10 9 7 12 12 N 1.46925 * 108.77438 * 305.36521 * 11 10 9 13 13 C 1.34775 * 120.63158 * 233.60970 * 12 11 10 14 14 O 1.21549 * 120.00117 * 174.48169 * 13 12 11 15 15 C 1.47891 * 120.00036 * 354.47857 * 13 12 11 16 16 C 1.39919 * 120.02635 * 147.01058 * 15 13 12 17 17 C 1.38324 * 120.35651 * 180.02562 * 16 15 13 18 18 C 1.37750 * 120.41642 * 359.97438 * 17 16 15 19 19 C 1.40754 * 120.03814 * 0.02562 * 18 17 16 20 20 C 1.41434 * 120.17957 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00257 * 152.70988 * 20 19 18 22 22 C 1.39940 * 119.99599 * 332.70409 * 20 19 18 23 23 N 1.30830 * 119.99665 * 163.41599 * 22 20 19 24 24 Si 1.86793 * 120.00344 * 343.41745 * 22 20 19 25 25 H 1.48499 * 109.47298 * 95.42091 * 24 22 20 26 26 H 1.48496 * 109.47409 * 215.42060 * 24 22 20 27 27 H 1.48500 * 109.47154 * 335.42165 * 24 22 20 28 28 C 1.39000 * 120.02224 * 326.73464 * 15 13 12 29 29 C 1.46930 * 118.73828 * 53.61030 * 12 11 10 30 30 N 1.30844 * 125.89351 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47159 * 270.02770 * 1 2 3 32 32 H 1.09001 * 109.47089 * 30.02503 * 1 2 3 33 33 H 1.08996 * 109.47154 * 150.02455 * 1 2 3 34 34 H 1.08006 * 126.03846 * 0.02562 * 3 2 1 35 35 H 1.09004 * 109.47173 * 270.00865 * 5 4 3 36 36 H 1.09004 * 109.47000 * 30.00122 * 5 4 3 37 37 H 1.08995 * 109.47368 * 150.00033 * 5 4 3 38 38 H 1.09000 * 109.46564 * 298.70011 * 9 7 6 39 39 H 1.09001 * 109.46364 * 58.67607 * 9 7 6 40 40 H 1.09003 * 109.50156 * 181.31503 * 10 9 7 41 41 H 1.09002 * 109.49727 * 301.41898 * 10 9 7 42 42 H 1.09004 * 109.58789 * 65.15300 * 11 10 9 43 43 H 1.08997 * 109.58700 * 185.57980 * 11 10 9 44 44 H 1.08003 * 119.81631 * 0.02562 * 16 15 13 45 45 H 1.08007 * 119.79034 * 179.97438 * 17 16 15 46 46 H 1.07997 * 119.98318 * 180.02562 * 18 17 16 47 47 H 0.96997 * 119.99760 * 179.97438 * 23 22 20 48 48 H 1.08003 * 120.20208 * 0.02562 * 28 15 13 49 49 H 1.09002 * 109.58285 * 186.60435 * 29 12 11 50 50 H 1.08993 * 109.58774 * 66.17587 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6143 0.7153 0.0006 5 6 4.8351 1.5988 0.0002 6 7 3.6088 -0.6342 0.0004 7 6 4.7899 -1.5008 0.0013 8 1 5.6910 -0.8877 0.0033 9 6 4.7761 -2.3844 -1.2482 10 6 6.0263 -3.2669 -1.2649 11 6 6.0222 -4.1746 -0.0308 12 7 5.8893 -3.3390 1.1704 13 6 6.7757 -3.4424 2.1803 14 8 6.7148 -2.6777 3.1232 15 6 7.8225 -4.4864 2.1415 16 6 9.0790 -4.2394 2.7055 17 6 10.0632 -5.2107 2.6725 18 6 9.8181 -6.4322 2.0848 19 6 8.5603 -6.6990 1.5123 20 6 8.3052 -7.9523 0.9086 21 1 7.2970 -8.3376 0.8692 22 6 9.3592 -8.6932 0.3623 23 7 9.1984 -9.9651 0.1014 24 14 10.9957 -7.8662 0.0056 25 1 11.9184 -8.0807 1.1491 26 1 11.5879 -8.4504 -1.2245 27 1 10.7819 -6.4099 -0.1915 28 6 7.5570 -5.7158 1.5497 29 6 4.7717 -2.3885 1.2497 30 7 2.2741 -1.0600 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9923 2.1598 0.0004 35 1 5.1296 1.8112 -1.0275 36 1 4.6075 2.5331 0.5134 37 1 5.6511 1.0912 0.5146 38 1 3.8869 -3.0147 -1.2376 39 1 4.7644 -1.7549 -2.1380 40 1 6.0276 -3.8791 -2.1667 41 1 6.9161 -2.6375 -1.2505 42 1 5.1822 -4.8669 -0.0891 43 1 6.9567 -4.7338 0.0147 44 1 9.2813 -3.2851 3.1690 45 1 11.0300 -5.0101 3.1102 46 1 10.5915 -7.1857 2.0634 47 1 9.9289 -10.4785 -0.2777 48 1 6.5873 -5.9122 1.1167 49 1 4.8812 -1.7693 2.1400 50 1 3.8298 -2.9350 1.2957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071870899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:37 Heat of formation + Delta-G solvation = 62.984765 kcal Electronic energy + Delta-G solvation = -31246.902318 eV Core-core repulsion = 27240.328152 eV Total energy + Delta-G solvation = -4006.574166 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.53163 -40.10347 -37.82751 -37.07557 -34.36785 -33.74116 -32.79665 -31.95657 -30.99536 -30.63555 -29.81801 -27.51817 -27.08620 -25.80304 -25.27392 -23.27297 -22.69376 -21.13906 -20.86481 -20.53124 -19.27881 -18.95596 -17.64254 -16.80715 -16.26718 -16.09527 -15.83901 -15.29624 -14.98562 -14.86404 -14.54603 -14.27969 -14.07793 -13.76164 -13.67264 -13.55042 -13.42421 -13.29820 -13.08245 -12.90251 -12.70622 -12.67441 -12.53125 -12.33843 -12.12782 -12.05370 -11.72595 -11.61738 -11.28620 -11.12832 -10.95937 -10.89692 -10.83259 -10.53439 -10.51096 -9.97288 -9.79955 -9.51371 -9.23390 -9.17447 -8.69423 -8.44806 -7.88213 -7.83676 -7.09366 -4.65513 1.73549 1.88841 2.23299 2.43739 2.65544 2.99000 3.10771 3.17412 3.22043 3.39500 3.83741 4.19186 4.35568 4.42065 4.49267 4.66305 4.75443 4.82997 4.95877 4.99722 5.11153 5.15289 5.21298 5.22879 5.36701 5.43343 5.44885 5.49719 5.54711 5.62312 5.70604 5.73604 5.78051 5.79983 5.84600 5.86567 6.03603 6.07500 6.10735 6.18445 6.25964 6.46718 6.52959 6.60057 6.69244 6.88487 6.94687 7.12066 7.31802 7.39599 7.62852 7.66116 7.68532 7.81620 8.17048 8.41202 8.52093 8.61853 9.92467 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.002489 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.859774 B =11246.540011 C =11805.903583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 C -0.276 4.276 4 C 0.086 3.914 5 C -0.095 4.095 6 N -0.360 5.360 7 C 0.151 3.849 8 H 0.103 0.897 9 C -0.124 4.124 10 C -0.132 4.132 11 C 0.082 3.918 12 N -0.609 5.609 13 C 0.570 3.430 14 O -0.550 6.550 15 C -0.098 4.098 16 C -0.189 4.189 17 C -0.083 4.083 18 C -0.219 4.219 19 C 0.084 3.916 20 C -0.441 4.441 21 H 0.093 0.907 22 C 0.082 3.918 23 N -0.802 5.802 24 Si 0.912 3.088 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.242 1.242 28 C -0.185 4.185 29 C 0.110 3.890 30 N -0.290 5.290 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.128 0.872 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.287 0.713 48 H 0.117 0.883 49 H 0.094 0.906 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.664 17.352 -5.578 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 C -0.305 4.305 4 C -0.041 4.041 5 C -0.154 4.154 6 N -0.142 5.142 7 C 0.048 3.952 8 H 0.121 0.879 9 C -0.162 4.162 10 C -0.171 4.171 11 C -0.040 4.040 12 N -0.343 5.343 13 C 0.362 3.638 14 O -0.428 6.428 15 C -0.101 4.101 16 C -0.209 4.209 17 C -0.101 4.101 18 C -0.238 4.238 19 C 0.081 3.919 20 C -0.470 4.470 21 H 0.111 0.889 22 C -0.137 4.137 23 N -0.426 5.426 24 Si 0.739 3.261 25 H -0.197 1.197 26 H -0.219 1.219 27 H -0.165 1.165 28 C -0.205 4.205 29 C -0.014 4.014 30 N -0.112 5.112 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.146 0.854 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.098 0.902 48 H 0.134 0.866 49 H 0.112 0.888 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.499 16.103 -5.171 18.928 hybrid contribution 0.713 0.983 -0.213 1.233 sum -7.785 17.086 -5.384 19.533 Atomic orbital electron populations 1.20143 0.86874 1.03053 1.02826 1.22300 0.96853 0.90860 0.99838 1.21059 0.90891 0.99626 1.18912 1.21121 0.97345 0.84656 1.00980 1.20486 0.93255 0.98319 1.03305 1.48607 1.05114 1.03787 1.56738 1.21708 0.84135 0.91788 0.97557 0.87866 1.21872 1.00060 0.98344 0.95943 1.21971 0.97306 0.98631 0.99200 1.22602 1.05800 0.92978 0.82640 1.47913 1.27556 1.39678 1.19142 1.18931 0.80431 0.83437 0.81047 1.90686 1.73484 1.44222 1.34399 1.19341 0.93856 0.94083 1.02852 1.20357 0.93124 0.99812 1.07600 1.20558 0.97497 0.93539 0.98515 1.21172 0.98778 0.97663 1.06193 1.17650 0.91035 0.92365 0.90843 1.19501 0.96873 0.99148 1.31433 0.88917 1.26191 1.00779 0.94065 0.92700 1.69673 1.34784 1.07105 1.31023 0.86308 0.80438 0.81968 0.77346 1.19672 1.21870 1.16494 1.21417 1.00514 0.92703 1.05818 1.21678 0.90446 0.91964 0.97274 1.77306 0.86196 1.22610 1.25123 0.90678 0.90665 0.91042 0.83857 0.90201 0.89567 0.90978 0.90184 0.91402 0.89521 0.91165 0.91027 0.85436 0.87854 0.88076 0.87983 0.90226 0.86570 0.88804 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.45 36.01 0.38 -0.19 16 2 C 0.07 0.79 7.22 -82.41 -0.59 0.20 16 3 C -0.28 -2.98 10.65 -40.02 -0.43 -3.40 16 4 C 0.09 0.96 6.93 -82.26 -0.57 0.39 16 5 C -0.10 -0.75 9.95 36.00 0.36 -0.39 16 6 N -0.36 -4.57 3.28 -50.58 -0.17 -4.74 16 7 C 0.15 1.84 3.06 -67.81 -0.21 1.63 16 8 H 0.10 1.19 6.67 -51.93 -0.35 0.84 16 9 C -0.12 -1.38 5.43 -26.69 -0.14 -1.53 16 10 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 11 C 0.08 1.15 4.74 -3.71 -0.02 1.13 16 12 N -0.61 -9.71 2.97 -173.86 -0.52 -10.23 16 13 C 0.57 11.12 7.41 -12.31 -0.09 11.03 16 14 O -0.55 -12.05 16.19 5.32 0.09 -11.96 16 15 C -0.10 -2.04 5.36 -105.03 -0.56 -2.60 16 16 C -0.19 -3.93 9.61 -38.92 -0.37 -4.30 16 17 C -0.08 -1.71 10.01 -39.73 -0.40 -2.11 16 18 C -0.22 -4.94 7.05 -38.81 -0.27 -5.21 16 19 C 0.08 1.96 5.19 -106.87 -0.55 1.41 16 20 C -0.44 -10.98 9.59 -37.73 -0.36 -11.34 16 21 H 0.09 2.41 8.06 -52.48 -0.42 1.99 16 22 C 0.08 2.01 5.44 -17.34 -0.09 1.92 16 23 N -0.80 -20.15 13.93 55.55 0.77 -19.38 16 24 Si 0.91 19.34 24.40 -169.99 -4.15 15.19 16 25 H -0.27 -5.62 6.71 56.52 0.38 -5.24 16 26 H -0.29 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.24 -5.15 6.67 56.52 0.38 -4.77 16 28 C -0.18 -3.90 7.11 -38.44 -0.27 -4.17 16 29 C 0.11 1.60 5.98 -3.71 -0.02 1.58 16 30 N -0.29 -4.00 12.43 33.67 0.42 -3.58 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.59 7.09 -51.93 -0.37 0.22 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.95 8.04 -51.93 -0.42 0.54 16 43 H 0.13 2.05 4.31 -51.93 -0.22 1.82 16 44 H 0.10 2.05 7.96 -52.48 -0.42 1.63 16 45 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 46 H 0.10 2.29 4.25 -52.49 -0.22 2.07 16 47 H 0.29 6.53 8.30 -40.82 -0.34 6.20 16 48 H 0.12 2.26 5.78 -52.48 -0.30 1.95 16 49 H 0.09 1.52 7.00 -51.93 -0.36 1.16 16 50 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -29.14 395.90 -9.32 -38.46 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -7.34 Total: 7.89 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -4.39 Total: -17.61 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.51 Total: -37.92 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.15 Total: 15.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.14 -9.32 -38.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071870899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.443 kcal (2) G-P(sol) polarization free energy of solvation -29.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds