Wall clock time and date at job start Tue Mar 31 2020 06:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39861 * 125.90135 * 2 1 4 4 C 1.35319 * 107.92562 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.13261 * 179.97438 * 4 3 2 6 6 N 1.34947 * 107.74317 * 0.02562 * 4 3 2 7 7 C 1.46497 * 126.03880 * 180.02562 * 6 4 3 8 8 H 1.08997 * 109.49882 * 0.05873 * 7 6 4 9 9 C 1.53042 * 109.49646 * 239.99884 * 7 6 4 10 10 C 1.53042 * 109.53913 * 178.68048 * 9 7 6 11 11 C 1.53198 * 109.31032 * 61.36607 * 10 9 7 12 12 N 1.46925 * 108.77438 * 305.36521 * 11 10 9 13 13 C 1.34775 * 120.63158 * 233.60970 * 12 11 10 14 14 O 1.21549 * 120.00117 * 174.48169 * 13 12 11 15 15 C 1.47891 * 120.00036 * 354.47857 * 13 12 11 16 16 C 1.39919 * 120.02635 * 147.01058 * 15 13 12 17 17 C 1.38324 * 120.35651 * 180.02562 * 16 15 13 18 18 C 1.37750 * 120.41642 * 359.97438 * 17 16 15 19 19 C 1.40754 * 120.03814 * 0.02562 * 18 17 16 20 20 C 1.41434 * 120.17957 * 180.02562 * 19 18 17 21 21 H 1.08004 * 120.00257 * 152.70988 * 20 19 18 22 22 C 1.39940 * 119.99599 * 332.70409 * 20 19 18 23 23 N 1.30830 * 119.99665 * 163.41599 * 22 20 19 24 24 Si 1.86793 * 120.00344 * 343.41745 * 22 20 19 25 25 H 1.48499 * 109.47298 * 95.42091 * 24 22 20 26 26 H 1.48496 * 109.47409 * 215.42060 * 24 22 20 27 27 H 1.48500 * 109.47154 * 335.42165 * 24 22 20 28 28 C 1.39000 * 120.02224 * 326.73464 * 15 13 12 29 29 C 1.46930 * 118.73828 * 53.61030 * 12 11 10 30 30 N 1.30844 * 125.89351 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47159 * 270.02770 * 1 2 3 32 32 H 1.09001 * 109.47089 * 30.02503 * 1 2 3 33 33 H 1.08996 * 109.47154 * 150.02455 * 1 2 3 34 34 H 1.08006 * 126.03846 * 0.02562 * 3 2 1 35 35 H 1.09004 * 109.47173 * 270.00865 * 5 4 3 36 36 H 1.09004 * 109.47000 * 30.00122 * 5 4 3 37 37 H 1.08995 * 109.47368 * 150.00033 * 5 4 3 38 38 H 1.09000 * 109.46564 * 298.70011 * 9 7 6 39 39 H 1.09001 * 109.46364 * 58.67607 * 9 7 6 40 40 H 1.09003 * 109.50156 * 181.31503 * 10 9 7 41 41 H 1.09002 * 109.49727 * 301.41898 * 10 9 7 42 42 H 1.09004 * 109.58789 * 65.15300 * 11 10 9 43 43 H 1.08997 * 109.58700 * 185.57980 * 11 10 9 44 44 H 1.08003 * 119.81631 * 0.02562 * 16 15 13 45 45 H 1.08007 * 119.79034 * 179.97438 * 17 16 15 46 46 H 1.07997 * 119.98318 * 180.02562 * 18 17 16 47 47 H 0.96997 * 119.99760 * 179.97438 * 23 22 20 48 48 H 1.08003 * 120.20208 * 0.02562 * 28 15 13 49 49 H 1.09002 * 109.58285 * 186.60435 * 29 12 11 50 50 H 1.08993 * 109.58774 * 66.17587 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6143 0.7153 0.0006 5 6 4.8351 1.5988 0.0002 6 7 3.6088 -0.6342 0.0004 7 6 4.7899 -1.5008 0.0013 8 1 5.6910 -0.8877 0.0033 9 6 4.7761 -2.3844 -1.2482 10 6 6.0263 -3.2669 -1.2649 11 6 6.0222 -4.1746 -0.0308 12 7 5.8893 -3.3390 1.1704 13 6 6.7757 -3.4424 2.1803 14 8 6.7148 -2.6777 3.1232 15 6 7.8225 -4.4864 2.1415 16 6 9.0790 -4.2394 2.7055 17 6 10.0632 -5.2107 2.6725 18 6 9.8181 -6.4322 2.0848 19 6 8.5603 -6.6990 1.5123 20 6 8.3052 -7.9523 0.9086 21 1 7.2970 -8.3376 0.8692 22 6 9.3592 -8.6932 0.3623 23 7 9.1984 -9.9651 0.1014 24 14 10.9957 -7.8662 0.0056 25 1 11.9184 -8.0807 1.1491 26 1 11.5879 -8.4504 -1.2245 27 1 10.7819 -6.4099 -0.1915 28 6 7.5570 -5.7158 1.5497 29 6 4.7717 -2.3885 1.2497 30 7 2.2741 -1.0600 0.0005 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3633 -0.8902 -0.5134 34 1 1.9923 2.1598 0.0004 35 1 5.1296 1.8112 -1.0275 36 1 4.6075 2.5331 0.5134 37 1 5.6511 1.0912 0.5146 38 1 3.8869 -3.0147 -1.2376 39 1 4.7644 -1.7549 -2.1380 40 1 6.0276 -3.8791 -2.1667 41 1 6.9161 -2.6375 -1.2505 42 1 5.1822 -4.8669 -0.0891 43 1 6.9567 -4.7338 0.0147 44 1 9.2813 -3.2851 3.1690 45 1 11.0300 -5.0101 3.1102 46 1 10.5915 -7.1857 2.0634 47 1 9.9289 -10.4785 -0.2777 48 1 6.5873 -5.9122 1.1167 49 1 4.8812 -1.7693 2.1400 50 1 3.8298 -2.9350 1.2957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071870899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:35 Heat of formation + Delta-G solvation = 48.116263 kcal Electronic energy + Delta-G solvation = -31247.547065 eV Core-core repulsion = 27240.328152 eV Total energy + Delta-G solvation = -4007.218913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.42705 -41.50563 -39.35226 -38.51285 -35.61110 -35.35190 -33.76382 -32.95986 -32.47570 -32.17705 -30.98559 -28.39796 -27.86177 -27.27645 -26.88744 -24.40040 -24.12497 -22.53288 -22.25925 -21.48554 -20.62705 -19.92819 -19.16600 -18.04439 -17.85212 -17.46467 -17.15875 -16.54744 -16.38152 -16.21921 -15.74834 -15.47955 -15.37732 -14.88728 -14.73647 -14.63672 -14.46049 -14.38247 -14.19019 -14.10398 -14.02414 -13.83756 -13.68813 -13.35312 -13.25723 -13.16964 -12.97219 -12.83272 -12.70266 -12.48348 -12.39392 -12.13048 -11.99824 -11.89504 -11.63446 -11.52609 -11.39977 -11.21220 -10.84404 -10.16753 -9.84886 -9.61024 -9.53087 -9.40823 -8.91073 -6.53290 0.20616 0.72046 0.87426 1.28854 1.29753 1.43221 1.50289 1.76482 1.83986 1.96550 2.11772 2.59331 3.25539 3.36513 3.41913 3.63603 3.71805 3.76161 3.83949 3.96075 4.00290 4.15056 4.22822 4.29693 4.39369 4.40391 4.49354 4.53531 4.56049 4.66057 4.67579 4.70931 4.79072 4.82931 4.83815 4.87421 4.92076 4.94994 4.97924 5.00266 5.08694 5.13467 5.20745 5.29532 5.34278 5.45060 5.61945 5.71546 5.80821 5.84037 6.06369 6.09585 6.20630 6.30384 6.62321 6.76801 6.80444 6.99089 8.16184 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.017900 B = 0.002489 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.859774 B =11246.540011 C =11805.903583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.059 3.941 3 C -0.283 4.283 4 C 0.078 3.922 5 C -0.093 4.093 6 N -0.372 5.372 7 C 0.158 3.842 8 H 0.114 0.886 9 C -0.114 4.114 10 C -0.123 4.123 11 C 0.078 3.922 12 N -0.599 5.599 13 C 0.568 3.432 14 O -0.578 6.578 15 C -0.105 4.105 16 C -0.184 4.184 17 C -0.081 4.081 18 C -0.230 4.230 19 C 0.069 3.931 20 C -0.470 4.470 21 H 0.063 0.937 22 C 0.048 3.952 23 N -0.843 5.843 24 Si 0.963 3.037 25 H -0.261 1.261 26 H -0.281 1.281 27 H -0.243 1.243 28 C -0.177 4.177 29 C 0.116 3.884 30 N -0.331 5.331 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.167 0.833 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.135 0.865 46 H 0.104 0.896 47 H 0.295 0.705 48 H 0.125 0.875 49 H 0.075 0.925 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 20.168 -6.400 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 C -0.312 4.312 4 C -0.049 4.049 5 C -0.151 4.151 6 N -0.155 5.155 7 C 0.055 3.945 8 H 0.131 0.869 9 C -0.152 4.152 10 C -0.161 4.161 11 C -0.043 4.043 12 N -0.331 5.331 13 C 0.359 3.641 14 O -0.459 6.459 15 C -0.108 4.108 16 C -0.204 4.204 17 C -0.099 4.099 18 C -0.249 4.249 19 C 0.067 3.933 20 C -0.499 4.499 21 H 0.081 0.919 22 C -0.167 4.167 23 N -0.469 5.469 24 Si 0.787 3.213 25 H -0.187 1.187 26 H -0.208 1.208 27 H -0.166 1.166 28 C -0.197 4.197 29 C -0.007 4.007 30 N -0.154 5.154 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.185 0.815 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.153 0.847 46 H 0.121 0.879 47 H 0.105 0.895 48 H 0.143 0.857 49 H 0.094 0.906 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.959 18.922 -6.019 21.391 hybrid contribution 0.386 0.265 0.126 0.484 sum -7.573 19.186 -5.893 21.452 Atomic orbital electron populations 1.20262 0.84785 1.04079 1.03598 1.22942 0.98360 0.90832 0.98594 1.21429 0.90693 1.00536 1.18559 1.21742 0.98791 0.84336 1.00014 1.20598 0.91694 0.98291 1.04537 1.48626 1.04781 1.04417 1.57675 1.21591 0.84740 0.91728 0.96430 0.86868 1.21780 0.99384 0.98075 0.95948 1.21918 0.97626 0.98368 0.98208 1.22673 1.05010 0.93541 0.83110 1.47904 1.26816 1.39582 1.18749 1.18772 0.80849 0.83028 0.81440 1.90670 1.74447 1.45198 1.35633 1.19538 0.94532 0.94179 1.02540 1.20681 0.93003 1.00318 1.06349 1.20883 0.98945 0.92467 0.97643 1.21317 0.98449 0.98614 1.06500 1.17776 0.92231 0.92197 0.91144 1.19446 0.95970 1.00595 1.33904 0.91882 1.26832 1.03407 0.94321 0.92177 1.69705 1.36192 1.08178 1.32810 0.85536 0.77162 0.80869 0.77780 1.18679 1.20816 1.16614 1.21516 1.00536 0.92437 1.05217 1.21647 0.89287 0.91674 0.98117 1.77262 0.86970 1.24093 1.27037 0.89930 0.88381 0.91271 0.81515 0.88555 0.87804 0.91469 0.91202 0.89955 0.87580 0.90571 0.90412 0.87229 0.86569 0.84673 0.87865 0.89457 0.85699 0.90626 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.45 71.24 0.74 -0.27 16 2 C 0.06 1.31 7.22 43.10 0.31 1.62 16 3 C -0.28 -5.56 10.65 21.99 0.23 -5.32 16 4 C 0.08 1.60 6.93 41.40 0.29 1.89 16 5 C -0.09 -1.23 9.95 71.23 0.71 -0.53 16 6 N -0.37 -9.06 3.28 -313.95 -1.03 -10.09 16 7 C 0.16 3.68 3.06 45.07 0.14 3.81 16 8 H 0.11 2.40 6.67 -2.39 -0.02 2.39 16 9 C -0.11 -2.34 5.43 30.62 0.17 -2.18 16 10 C -0.12 -2.53 6.08 30.67 0.19 -2.34 16 11 C 0.08 2.13 4.74 86.36 0.41 2.54 16 12 N -0.60 -18.82 2.97 -822.26 -2.44 -21.27 16 13 C 0.57 21.92 7.41 86.80 0.64 22.57 16 14 O -0.58 -25.20 16.19 -3.87 -0.06 -25.26 16 15 C -0.10 -4.26 5.36 -20.13 -0.11 -4.37 16 16 C -0.18 -7.29 9.61 22.70 0.22 -7.07 16 17 C -0.08 -3.17 10.01 22.17 0.22 -2.95 16 18 C -0.23 -10.09 7.05 22.77 0.16 -9.93 16 19 C 0.07 3.24 5.19 -21.32 -0.11 3.13 16 20 C -0.47 -24.21 9.59 23.47 0.23 -23.98 16 21 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 22 C 0.05 2.40 5.44 85.25 0.46 2.86 16 23 N -0.84 -43.55 13.93 21.83 0.30 -43.24 16 24 Si 0.96 39.32 24.40 68.60 1.67 41.00 16 25 H -0.26 -10.19 6.71 99.48 0.67 -9.53 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 27 H -0.24 -9.85 6.67 99.48 0.66 -9.19 16 28 C -0.18 -7.51 7.11 23.01 0.16 -7.35 16 29 C 0.12 3.37 5.98 86.36 0.52 3.89 16 30 N -0.33 -8.96 12.43 -47.39 -0.59 -9.55 16 31 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 36 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 0.97 7.09 -2.39 -0.02 0.95 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 2.04 8.04 -2.39 -0.02 2.02 16 43 H 0.11 3.47 4.31 -2.39 -0.01 3.46 16 44 H 0.12 4.33 7.96 -2.91 -0.02 4.31 16 45 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 46 H 0.10 4.49 4.25 -2.91 -0.01 4.47 16 47 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 48 H 0.13 4.95 5.78 -2.91 -0.02 4.93 16 49 H 0.08 2.48 7.00 -2.39 -0.02 2.47 16 50 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -64.10 395.90 4.30 -59.79 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: 0.87 Total: 32.59 kcal Atomic # 6 Polarization: -29.55 SS G_CDS: 5.58 Total: -23.97 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -3.76 Total: -84.15 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.06 Total: -25.26 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.67 Total: 41.00 kcal Total: -64.10 4.30 -59.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071870899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.908 kcal (2) G-P(sol) polarization free energy of solvation -64.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds