Wall clock time and date at job start Tue Mar 31 2020 06:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39872 * 125.89365 * 2 1 4 4 C 1.35313 * 107.91797 * 179.75929 * 3 2 1 5 5 C 1.50703 * 126.13080 * 180.26386 * 4 3 2 6 6 N 1.34951 * 107.74473 * 0.42245 * 4 3 2 7 7 C 1.46507 * 126.03770 * 179.84027 * 6 4 3 8 8 H 1.08998 * 109.52109 * 359.79798 * 7 6 4 9 9 C 1.53043 * 109.49411 * 119.87331 * 7 6 4 10 10 C 1.53041 * 109.53307 * 181.31407 * 9 7 6 11 11 C 1.53613 * 109.24670 * 298.51549 * 10 9 7 12 12 N 1.46923 * 108.54566 * 54.85652 * 11 10 9 13 13 C 1.34781 * 120.63641 * 126.36749 * 12 11 10 14 14 O 1.21545 * 120.00133 * 175.60995 * 13 12 11 15 15 C 1.47890 * 119.99475 * 355.61490 * 13 12 11 16 16 C 1.39917 * 120.01992 * 221.63121 * 15 13 12 17 17 C 1.38332 * 120.35433 * 180.23515 * 16 15 13 18 18 C 1.37750 * 120.41476 * 359.47789 * 17 16 15 19 19 C 1.40755 * 120.03498 * 0.51734 * 18 17 16 20 20 C 1.41432 * 120.17396 * 179.76554 * 19 18 17 21 21 H 1.08000 * 119.99990 * 207.63267 * 20 19 18 22 22 C 1.39935 * 120.00350 * 27.63527 * 20 19 18 23 23 N 1.30824 * 119.99941 * 14.49293 * 22 20 19 24 24 Si 1.86803 * 120.00350 * 194.49542 * 22 20 19 25 25 H 1.48503 * 109.47055 * 89.99924 * 24 22 20 26 26 H 1.48498 * 109.47358 * 209.99848 * 24 22 20 27 27 H 1.48497 * 109.46800 * 329.99993 * 24 22 20 28 28 C 1.38993 * 120.02806 * 41.60304 * 15 13 12 29 29 C 1.46931 * 118.73605 * 306.09842 * 12 11 10 30 30 N 1.30831 * 125.90158 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.46945 * 270.00043 * 1 2 3 32 32 H 1.09001 * 109.47129 * 30.00495 * 1 2 3 33 33 H 1.09002 * 109.46675 * 150.00410 * 1 2 3 34 34 H 1.07993 * 126.04120 * 0.02562 * 3 2 1 35 35 H 1.09006 * 109.46759 * 270.18533 * 5 4 3 36 36 H 1.08997 * 109.47005 * 30.18322 * 5 4 3 37 37 H 1.08992 * 109.47254 * 150.18879 * 5 4 3 38 38 H 1.08993 * 109.46333 * 301.33629 * 9 7 6 39 39 H 1.09000 * 109.45617 * 61.30100 * 9 7 6 40 40 H 1.09002 * 109.49434 * 58.59567 * 10 9 7 41 41 H 1.08998 * 109.49631 * 178.65431 * 10 9 7 42 42 H 1.09004 * 109.74343 * 295.12041 * 11 10 9 43 43 H 1.09004 * 109.66874 * 174.54660 * 11 10 9 44 44 H 1.07998 * 119.82583 * 359.95322 * 16 15 13 45 45 H 1.08004 * 119.79028 * 179.74096 * 17 16 15 46 46 H 1.08001 * 119.98121 * 180.23757 * 18 17 16 47 47 H 0.97005 * 120.00383 * 180.02562 * 23 22 20 48 48 H 1.08006 * 120.19936 * 0.04524 * 28 15 13 49 49 H 1.09001 * 109.58470 * 173.64789 * 29 12 11 50 50 H 1.09003 * 109.58518 * 294.06780 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 0.0054 5 6 4.8350 1.5991 0.0130 6 7 3.6088 -0.6340 -0.0008 7 6 4.7900 -1.5006 -0.0013 8 1 5.6914 -0.8878 0.0005 9 6 4.7731 -2.3878 1.2456 10 6 6.0233 -3.2704 1.2627 11 6 6.0192 -4.1783 0.0236 12 7 5.8925 -3.3352 -1.1730 13 6 6.7813 -3.4359 -2.1813 14 8 6.6211 -2.7913 -3.1992 15 6 7.9513 -4.3307 -2.0490 16 6 9.2078 -3.9113 -2.4993 17 6 10.3059 -4.7446 -2.3834 18 6 10.1775 -5.9922 -1.8138 19 6 8.9214 -6.4314 -1.3550 20 6 8.7852 -7.7137 -0.7742 21 1 7.8402 -8.2337 -0.8288 22 6 9.8749 -8.3088 -0.1288 23 7 10.9197 -7.5887 0.1895 24 14 9.8379 -10.1316 0.2784 25 1 10.4059 -10.9038 -0.8559 26 1 10.6434 -10.3823 1.5004 27 1 8.4350 -10.5576 0.5140 28 6 7.8036 -5.5887 -1.4766 29 6 4.7751 -2.3845 -1.2523 30 7 2.2743 -1.0598 -0.0005 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8901 -0.5138 34 1 1.9922 2.1598 0.0004 35 1 5.1323 1.8167 -1.0129 36 1 4.6060 2.5307 0.5303 37 1 5.6496 1.0888 0.5268 38 1 4.7589 -1.7610 2.1372 39 1 3.8839 -3.0181 1.2308 40 1 6.9131 -2.6408 1.2526 41 1 6.0226 -3.8848 2.1630 42 1 5.1768 -4.8681 0.0754 43 1 6.9520 -4.7403 -0.0225 44 1 9.3202 -2.9336 -2.9440 45 1 11.2708 -4.4132 -2.7379 46 1 11.0403 -6.6356 -1.7234 47 1 11.6753 -8.0012 0.6366 48 1 6.8354 -5.9166 -1.1279 49 1 4.8868 -1.7626 -2.1405 50 1 3.8333 -2.9310 -1.3024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071870900.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:41 Heat of formation + Delta-G solvation = 59.314504 kcal Electronic energy + Delta-G solvation = -31154.552951 eV Core-core repulsion = 27147.819630 eV Total energy + Delta-G solvation = -4006.733320 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 353.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.49513 -39.96648 -37.62163 -36.91422 -34.29525 -33.73679 -32.71096 -31.87754 -30.80693 -30.02352 -29.59015 -27.45795 -27.04717 -25.64802 -25.35582 -23.18405 -22.34408 -20.97307 -20.90777 -20.46923 -19.19380 -18.89007 -17.49123 -16.71610 -16.16571 -15.83121 -15.57474 -15.13191 -14.96537 -14.83391 -14.46304 -14.22549 -14.01327 -13.62425 -13.59210 -13.47034 -13.34852 -13.20548 -12.97714 -12.80315 -12.61818 -12.60167 -12.40033 -12.22256 -12.01679 -11.76893 -11.56310 -11.39244 -11.28474 -11.08098 -10.87901 -10.77094 -10.67733 -10.53136 -10.49682 -10.31318 -9.60702 -9.33696 -9.20594 -9.11686 -8.64873 -8.37510 -7.65503 -7.57714 -6.87803 -4.53494 1.77058 2.20956 2.27261 2.64433 2.68239 3.00668 3.03747 3.06933 3.30867 3.54601 3.84303 4.24274 4.45368 4.49291 4.56871 4.70345 4.80643 4.86757 5.02487 5.08064 5.17267 5.24120 5.26836 5.42160 5.44147 5.46416 5.48697 5.57687 5.58907 5.66034 5.75123 5.78158 5.84626 5.85538 5.94023 6.08717 6.11402 6.18018 6.25065 6.30299 6.59757 6.65106 6.70935 6.82778 6.93639 6.99051 7.09058 7.25923 7.52486 7.68105 7.70491 7.81958 7.85929 8.01349 8.42375 8.62403 8.71201 8.74276 10.07300 Molecular weight = 353.18amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.002418 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.837456 B =11578.513512 C =12358.036091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.067 3.933 3 C -0.276 4.276 4 C 0.087 3.913 5 C -0.095 4.095 6 N -0.359 5.359 7 C 0.151 3.849 8 H 0.104 0.896 9 C -0.124 4.124 10 C -0.131 4.131 11 C 0.078 3.922 12 N -0.609 5.609 13 C 0.571 3.429 14 O -0.552 6.552 15 C -0.109 4.109 16 C -0.180 4.180 17 C -0.112 4.112 18 C -0.135 4.135 19 C 0.104 3.896 20 C -0.463 4.463 21 H 0.080 0.920 22 C 0.076 3.924 23 N -0.797 5.797 24 Si 0.910 3.090 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.262 1.262 28 C -0.200 4.200 29 C 0.111 3.889 30 N -0.290 5.290 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.144 0.856 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.282 0.718 48 H 0.108 0.892 49 H 0.092 0.908 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 12.445 5.131 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.099 4.099 3 C -0.305 4.305 4 C -0.041 4.041 5 C -0.154 4.154 6 N -0.142 5.142 7 C 0.048 3.952 8 H 0.121 0.879 9 C -0.162 4.162 10 C -0.170 4.170 11 C -0.044 4.044 12 N -0.343 5.343 13 C 0.363 3.637 14 O -0.431 6.431 15 C -0.112 4.112 16 C -0.200 4.200 17 C -0.131 4.131 18 C -0.154 4.154 19 C 0.102 3.898 20 C -0.493 4.493 21 H 0.098 0.902 22 C -0.142 4.142 23 N -0.423 5.423 24 Si 0.734 3.266 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.186 1.186 28 C -0.220 4.220 29 C -0.013 4.013 30 N -0.113 5.113 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.161 0.839 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.152 0.848 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.140 0.860 47 H 0.093 0.907 48 H 0.126 0.874 49 H 0.111 0.889 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.858 11.400 4.706 16.431 hybrid contribution 0.047 0.141 0.370 0.399 sum -10.811 11.541 5.076 16.609 Atomic orbital electron populations 1.20139 0.86899 1.03119 1.02697 1.22295 0.96835 0.90872 0.99922 1.21053 0.90891 0.99610 1.18988 1.21128 0.97351 0.84667 1.00940 1.20488 0.93130 0.98158 1.03590 1.48615 1.05111 1.03796 1.56659 1.21719 0.84072 0.91802 0.97629 0.87853 1.21878 1.00102 0.98328 0.95915 1.22009 0.97198 0.98592 0.99156 1.22731 1.06086 0.92924 0.82671 1.47949 1.27338 1.39401 1.19616 1.19028 0.81845 0.81009 0.81802 1.90678 1.76158 1.47234 1.28992 1.19212 0.92196 0.95271 1.04558 1.20344 0.91784 1.00072 1.07776 1.20677 0.96596 0.95232 1.00584 1.21538 0.98927 0.95649 0.99326 1.17536 0.90774 0.92277 0.89230 1.19546 0.97877 1.00650 1.31220 0.90235 1.25879 0.94554 1.00064 0.93662 1.69775 1.05827 1.37103 1.29574 0.86280 0.79529 0.82241 0.78532 1.19270 1.20285 1.18581 1.21299 0.99251 0.93738 1.07692 1.21637 0.90611 0.91996 0.97029 1.77288 0.86232 1.22640 1.25103 0.90772 0.90648 0.91038 0.83869 0.90009 0.89621 0.91093 0.91477 0.90308 0.91070 0.89714 0.91422 0.84779 0.88574 0.88552 0.86042 0.90724 0.87410 0.88927 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 36.01 0.38 -0.21 16 2 C 0.07 0.81 7.22 -82.40 -0.59 0.21 16 3 C -0.28 -3.08 10.65 -40.01 -0.43 -3.50 16 4 C 0.09 1.00 6.93 -82.26 -0.57 0.43 16 5 C -0.10 -0.79 9.95 36.01 0.36 -0.44 16 6 N -0.36 -4.74 3.28 -50.58 -0.17 -4.91 16 7 C 0.15 1.94 3.06 -67.81 -0.21 1.73 16 8 H 0.10 1.26 6.68 -51.93 -0.35 0.92 16 9 C -0.12 -1.47 5.42 -26.69 -0.14 -1.62 16 10 C -0.13 -1.61 6.10 -26.39 -0.16 -1.77 16 11 C 0.08 1.17 5.12 -3.49 -0.02 1.15 16 12 N -0.61 -10.28 2.97 -173.60 -0.51 -10.79 16 13 C 0.57 11.77 7.34 -12.31 -0.09 11.68 16 14 O -0.55 -12.74 16.37 5.33 0.09 -12.65 16 15 C -0.11 -2.40 5.33 -105.04 -0.56 -2.96 16 16 C -0.18 -3.97 9.65 -38.92 -0.38 -4.35 16 17 C -0.11 -2.49 10.01 -39.73 -0.40 -2.89 16 18 C -0.13 -3.25 8.66 -38.81 -0.34 -3.59 16 19 C 0.10 2.54 5.54 -106.87 -0.59 1.95 16 20 C -0.46 -11.25 9.05 -37.73 -0.34 -11.59 16 21 H 0.08 1.86 7.89 -52.49 -0.41 1.45 16 22 C 0.08 1.77 5.18 -17.35 -0.09 1.68 16 23 N -0.80 -19.12 10.97 55.55 0.61 -18.51 16 24 Si 0.91 17.56 29.58 -169.99 -5.03 12.53 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 27 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 28 C -0.20 -4.44 7.07 -38.45 -0.27 -4.71 16 29 C 0.11 1.70 5.96 -3.71 -0.02 1.68 16 30 N -0.29 -4.11 12.43 33.67 0.42 -3.69 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.57 7.10 -51.93 -0.37 0.20 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.13 2.34 3.93 -51.93 -0.20 2.13 16 44 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 45 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 46 H 0.12 3.01 6.26 -52.49 -0.33 2.69 16 47 H 0.28 6.18 8.30 -40.82 -0.34 5.85 16 48 H 0.11 2.21 6.12 -52.48 -0.32 1.89 16 49 H 0.09 1.57 7.03 -51.93 -0.36 1.20 16 50 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -28.83 402.64 -10.39 -39.23 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.40 Total: 9.84 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -4.47 Total: -17.11 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.35 Total: -37.90 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.09 Total: -12.65 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.83 -10.39 -39.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071870900.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.542 kcal (2) G-P(sol) polarization free energy of solvation -28.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds