Wall clock time and date at job start Tue Mar 31 2020 05:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46749 * 2 1 4 4 C 1.52994 * 109.46917 * 120.00489 * 2 1 3 5 5 C 1.53002 * 117.49819 * 294.45448 * 4 2 1 6 6 C 1.53001 * 60.03036 * 107.48346 * 5 4 2 7 7 N 1.46897 * 109.47133 * 240.00477 * 2 1 3 8 8 C 1.46904 * 111.00173 * 292.46536 * 7 2 1 9 9 C 1.50707 * 109.47127 * 78.08041 * 8 7 2 10 10 H 1.08002 * 119.99571 * 2.14698 * 9 8 7 11 11 C 1.37874 * 120.00047 * 182.14947 * 9 8 7 12 12 N 1.31520 * 119.99894 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 120.00078 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46849 * 89.99915 * 13 11 9 15 15 H 1.48496 * 109.46986 * 210.00356 * 13 11 9 16 16 H 1.48498 * 109.47103 * 330.00419 * 13 11 9 17 17 C 1.46896 * 111.00057 * 168.51205 * 7 2 1 18 18 C 1.50700 * 109.47219 * 286.70514 * 17 7 2 19 19 C 1.38281 * 119.92433 * 275.48219 * 18 17 7 20 20 C 1.38098 * 120.07584 * 179.72410 * 19 18 17 21 21 C 1.38913 * 119.92506 * 0.54774 * 20 19 18 22 22 N 1.39674 * 120.07897 * 179.70225 * 21 20 19 23 23 S 1.65595 * 120.00108 * 313.48326 * 22 21 20 24 24 C 1.81404 * 104.45073 * 298.44450 * 23 22 21 25 25 O 1.42101 * 104.27893 * 54.51547 * 23 22 21 26 26 O 1.42098 * 104.28039 * 182.37476 * 23 22 21 27 27 C 1.38919 * 119.84915 * 359.73051 * 21 20 19 28 28 C 1.38104 * 119.92131 * 359.97438 * 27 21 20 29 29 H 1.08993 * 109.47397 * 307.49266 * 1 2 3 30 30 H 1.09002 * 109.46868 * 67.49582 * 1 2 3 31 31 H 1.09005 * 109.46844 * 187.49408 * 1 2 3 32 32 H 1.09006 * 115.56045 * 148.77254 * 4 2 1 33 33 H 1.09001 * 117.50186 * 214.97769 * 5 4 2 34 34 H 1.08999 * 117.49978 * 359.97438 * 5 4 2 35 35 H 1.09002 * 117.50087 * 107.49894 * 6 5 4 36 36 H 1.09002 * 117.49884 * 252.52164 * 6 5 4 37 37 H 1.08998 * 109.47406 * 198.07877 * 8 7 2 38 38 H 1.09002 * 109.46692 * 318.08576 * 8 7 2 39 39 H 0.97001 * 119.99520 * 179.97438 * 12 11 9 40 40 H 1.09000 * 109.47070 * 46.70400 * 17 7 2 41 41 H 1.09004 * 109.46965 * 166.70279 * 17 7 2 42 42 H 1.08002 * 119.96188 * 359.97438 * 19 18 17 43 43 H 1.08002 * 120.04309 * 180.27685 * 20 19 18 44 44 H 0.97001 * 119.99803 * 133.47780 * 22 21 20 45 45 H 1.09005 * 109.46883 * 65.05107 * 24 23 22 46 46 H 1.08991 * 109.47592 * 185.05157 * 24 23 22 47 47 H 1.09004 * 109.47030 * 305.05823 * 24 23 22 48 48 H 1.07995 * 120.04102 * 179.97438 * 27 21 20 49 49 H 1.08003 * 119.96043 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.7457 -0.0782 2.6059 6 6 0.9972 -1.3433 2.1813 7 7 2.0197 -0.6924 -1.1995 8 6 1.7011 -2.1255 -1.1471 9 6 0.2517 -2.3313 -1.5049 10 1 -0.3616 -1.4862 -1.7807 11 6 -0.2913 -3.5984 -1.4802 12 7 -1.5561 -3.7780 -1.7930 13 14 0.7698 -5.0601 -1.0037 14 1 0.6947 -5.2685 0.4647 15 1 0.2800 -6.2757 -1.7020 16 1 2.1781 -4.7980 -1.3950 17 6 3.4623 -0.4800 -1.3779 18 6 3.7082 0.9313 -1.8457 19 6 3.6210 1.2370 -3.1915 20 6 3.8401 2.5304 -3.6229 21 6 4.1597 3.5225 -2.7047 22 7 4.3881 4.8305 -3.1383 23 16 5.3656 5.1107 -4.4452 24 6 6.9844 4.4610 -3.9474 25 8 4.8050 4.3136 -5.4795 26 8 5.4086 6.5269 -4.5535 27 6 4.2522 3.2108 -1.3541 28 6 4.0258 1.9165 -0.9288 29 1 -0.3634 0.6254 0.8153 30 1 -0.3633 0.3934 -0.9494 31 1 -0.3633 -1.0189 0.1340 32 1 2.9896 -1.2444 1.1355 33 1 2.5016 -0.1783 3.3849 34 1 1.1893 0.8590 2.6085 35 1 1.2607 -2.2756 2.6809 36 1 -0.0518 -1.2383 1.9042 37 1 2.3303 -2.6638 -1.8559 38 1 1.8838 -2.5017 -0.1404 39 1 -1.9379 -4.6696 -1.7759 40 1 3.9735 -0.6425 -0.4291 41 1 3.8435 -1.1807 -2.1208 42 1 3.3772 0.4642 -3.9055 43 1 3.7674 2.7695 -4.6737 44 1 3.9741 5.5746 -2.6738 45 1 6.9168 3.3814 -3.8124 46 1 7.7193 4.6851 -4.7204 47 1 7.2898 4.9258 -3.0099 48 1 4.5008 3.9796 -0.6375 49 1 4.0979 1.6733 0.1211 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071897156.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:02 Heat of formation + Delta-G solvation = 2.057247 kcal Electronic energy + Delta-G solvation = -29724.526346 eV Core-core repulsion = 25780.346933 eV Total energy + Delta-G solvation = -3944.179414 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.82678 -38.64228 -37.43626 -36.33529 -35.85661 -34.63596 -32.46531 -30.93938 -30.51796 -29.86504 -29.14805 -27.43841 -24.57617 -23.39363 -22.74251 -22.00973 -21.31231 -21.19115 -19.78730 -18.21159 -18.10042 -17.82196 -16.84918 -16.61104 -15.89034 -15.72456 -15.38712 -15.18070 -14.95849 -14.33455 -14.21760 -13.90641 -13.68026 -13.59405 -13.49633 -13.31009 -13.03271 -12.52059 -12.45998 -12.43947 -12.25027 -12.21187 -11.91106 -11.59753 -11.47248 -11.38537 -11.25981 -11.09801 -11.05068 -10.78240 -10.59920 -10.38941 -10.38140 -10.20309 -9.91949 -9.77993 -9.41244 -9.00252 -8.87313 -8.50925 -8.27453 -7.35909 -6.01118 -3.94654 -0.16551 1.30978 1.44358 2.27144 3.27538 3.36187 3.37073 3.39024 3.70075 3.85152 4.21007 4.35401 4.44000 4.59165 4.80504 4.87342 4.97520 5.03475 5.14058 5.15360 5.28243 5.30211 5.37162 5.41295 5.47253 5.52433 5.75989 5.86876 5.91597 5.92959 6.02722 6.10537 6.15568 6.19470 6.30457 6.33737 6.43734 6.47110 6.55825 6.68782 6.70144 6.77502 6.83649 6.92692 7.04838 7.07704 7.45588 7.68154 7.91514 8.06292 8.70370 9.10960 9.60926 11.11373 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.002606 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.424673 B =10743.634510 C =11577.114738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.187 4.187 6 C -0.170 4.170 7 N -0.511 5.511 8 C 0.157 3.843 9 C -0.496 4.496 10 H 0.090 0.910 11 C 0.068 3.932 12 N -0.901 5.901 13 Si 0.867 3.133 14 H -0.279 1.279 15 H -0.288 1.288 16 H -0.269 1.269 17 C 0.082 3.918 18 C -0.063 4.063 19 C -0.075 4.075 20 C -0.150 4.150 21 C 0.121 3.879 22 N -1.056 6.056 23 S 2.611 3.389 24 C -0.668 4.668 25 O -0.947 6.947 26 O -0.959 6.959 27 C -0.132 4.132 28 C -0.100 4.100 29 H 0.029 0.971 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.108 0.892 37 H 0.020 0.980 38 H 0.000 1.000 39 H 0.262 0.738 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.154 0.846 44 H 0.423 0.577 45 H 0.132 0.868 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.123 0.877 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.802 15.307 2.559 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.015 3.985 3 H 0.086 0.914 4 C -0.192 4.192 5 C -0.225 4.225 6 C -0.207 4.207 7 N -0.233 5.233 8 C 0.031 3.969 9 C -0.535 4.535 10 H 0.108 0.892 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.695 3.305 14 H -0.205 1.205 15 H -0.214 1.214 16 H -0.194 1.194 17 C -0.046 4.046 18 C -0.065 4.065 19 C -0.094 4.094 20 C -0.171 4.171 21 C 0.026 3.974 22 N -0.807 5.807 23 S 2.704 3.296 24 C -0.819 4.819 25 O -0.936 6.936 26 O -0.950 6.950 27 C -0.153 4.153 28 C -0.119 4.119 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.038 0.962 38 H 0.017 0.983 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.150 0.850 43 H 0.171 0.829 44 H 0.260 0.740 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.148 0.852 48 H 0.141 0.859 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.260 15.676 1.170 22.617 hybrid contribution 1.202 -1.304 1.804 2.529 sum 17.462 14.373 2.974 22.811 Atomic orbital electron populations 1.22207 0.93717 1.04438 0.99819 1.21130 0.96458 0.95730 0.85230 0.91435 1.23026 1.00044 1.03844 0.92283 1.22894 1.03902 0.97682 0.98023 1.23078 0.99159 0.95676 1.02805 1.62270 1.09894 1.14495 1.36666 1.20315 0.98341 0.82975 0.95248 1.21168 0.93273 0.94745 1.44281 0.89245 1.24864 0.94696 0.98307 0.95460 1.69886 1.12260 1.22310 1.49644 0.86983 0.81413 0.83275 0.78787 1.20484 1.21434 1.19442 1.21147 0.91496 0.92357 0.99588 1.20045 0.97000 0.96056 0.93352 1.21020 0.96809 0.95939 0.95621 1.21887 1.00714 0.93221 1.01265 1.17343 1.03287 0.83140 0.93608 1.53202 1.62944 1.11881 1.52711 1.05014 0.76699 0.74206 0.73664 1.30458 1.23958 1.14452 1.12988 1.93602 1.74749 1.71102 1.54190 1.93621 1.87018 1.28991 1.85323 1.21023 1.03041 0.96999 0.94282 1.20962 0.99369 0.92131 0.99488 0.95199 0.92460 0.88157 0.88925 0.89973 0.89246 0.89958 0.87364 0.96171 0.98263 0.92828 0.94505 0.90326 0.84974 0.82885 0.73970 0.84927 0.85190 0.85208 0.85923 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 6.40 37.16 0.24 -2.53 16 2 C 0.12 2.13 2.57 -67.71 -0.17 1.96 16 3 H 0.07 1.08 6.14 -51.93 -0.32 0.77 16 4 C -0.17 -2.75 3.73 -90.58 -0.34 -3.09 16 5 C -0.19 -2.55 10.06 -26.73 -0.27 -2.81 16 6 C -0.17 -2.77 9.35 -26.69 -0.25 -3.02 16 7 N -0.51 -9.66 4.38 -229.52 -1.00 -10.66 16 8 C 0.16 3.50 3.61 -4.97 -0.02 3.48 16 9 C -0.50 -13.07 7.33 -34.44 -0.25 -13.32 16 10 H 0.09 2.57 6.24 -52.49 -0.33 2.25 16 11 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 12 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 13 Si 0.87 20.83 27.43 -169.99 -4.66 16.17 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.22 6.60 56.52 0.37 -5.85 16 17 C 0.08 1.26 4.99 -4.98 -0.02 1.24 16 18 C -0.06 -0.85 4.97 -104.59 -0.52 -1.37 16 19 C -0.07 -1.01 9.71 -39.62 -0.38 -1.39 16 20 C -0.15 -1.85 9.23 -39.38 -0.36 -2.22 16 21 C 0.12 1.27 6.02 -83.78 -0.50 0.76 16 22 N -1.06 -8.60 5.67 32.41 0.18 -8.42 16 23 S 2.61 21.45 6.00 -107.50 -0.65 20.81 16 24 C -0.67 -3.34 10.75 101.05 1.09 -2.25 16 25 O -0.95 -11.14 15.17 -57.54 -0.87 -12.01 16 26 O -0.96 -10.58 18.08 -57.54 -1.04 -11.62 16 27 C -0.13 -1.31 9.97 -39.38 -0.39 -1.70 16 28 C -0.10 -1.16 8.29 -39.61 -0.33 -1.48 16 29 H 0.03 0.49 7.86 -51.93 -0.41 0.08 16 30 H 0.06 1.18 7.62 -51.93 -0.40 0.78 16 31 H 0.10 2.23 4.40 -51.93 -0.23 2.00 16 32 H 0.09 1.49 6.51 -51.93 -0.34 1.15 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.11 1.90 5.79 -51.93 -0.30 1.60 16 37 H 0.02 0.47 6.79 -51.93 -0.35 0.11 16 38 H 0.00 -0.01 5.29 -51.93 -0.27 -0.28 16 39 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 40 H 0.04 0.53 6.36 -51.93 -0.33 0.20 16 41 H 0.08 1.20 7.61 -51.93 -0.40 0.81 16 42 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 43 H 0.15 1.95 5.65 -52.49 -0.30 1.65 16 44 H 0.42 2.69 8.92 -34.47 -0.31 2.38 16 45 H 0.13 0.66 8.14 -51.92 -0.42 0.23 16 46 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.30 8.00 -52.48 -0.42 0.88 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -33.45 390.33 -11.21 -44.66 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.24 Total: 7.08 kcal Atomic # 6 Polarization: -23.40 SS G_CDS: -2.59 Total: -25.99 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.05 Total: -44.98 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -1.91 Total: -23.63 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.66 Total: 16.17 kcal Atomic # 16 Polarization: 21.45 SS G_CDS: -0.65 Total: 20.81 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.45 -11.21 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897156.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.719 kcal (2) G-P(sol) polarization free energy of solvation -33.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds