Wall clock time and date at job start Tue Mar 31 2020 05:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46919 * 2 1 4 4 C 1.53001 * 109.47303 * 240.00702 * 2 1 3 5 5 C 1.52993 * 117.50288 * 132.79463 * 4 2 1 6 6 C 1.53004 * 60.00254 * 252.51007 * 5 4 2 7 7 N 1.46897 * 109.47498 * 120.00310 * 2 1 3 8 8 C 1.46898 * 110.99658 * 62.50281 * 7 2 1 9 9 C 1.50705 * 109.47102 * 282.36281 * 8 7 2 10 10 H 1.07998 * 119.99903 * 355.89949 * 9 8 7 11 11 C 1.37879 * 119.99800 * 175.90477 * 9 8 7 12 12 N 1.31513 * 120.00079 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99758 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47315 * 59.99874 * 13 11 9 15 15 H 1.48505 * 109.47028 * 179.97438 * 13 11 9 16 16 H 1.48492 * 109.47192 * 299.99109 * 13 11 9 17 17 C 1.46891 * 111.00207 * 186.45942 * 7 2 1 18 18 C 1.50700 * 109.47233 * 77.45963 * 17 7 2 19 19 C 1.38291 * 119.92457 * 264.78500 * 18 17 7 20 20 C 1.38099 * 120.07226 * 179.72672 * 19 18 17 21 21 C 1.38909 * 119.92585 * 0.54367 * 20 19 18 22 22 N 1.39675 * 120.07512 * 179.70487 * 21 20 19 23 23 S 1.65602 * 119.99995 * 273.59136 * 22 21 20 24 24 C 1.81400 * 104.45219 * 296.31071 * 23 22 21 25 25 O 1.42100 * 104.28069 * 52.38300 * 23 22 21 26 26 O 1.42103 * 104.27805 * 180.23799 * 23 22 21 27 27 C 1.38913 * 119.85291 * 359.73718 * 21 20 19 28 28 C 1.38101 * 119.92084 * 359.97438 * 27 21 20 29 29 H 1.09003 * 109.46566 * 170.00838 * 1 2 3 30 30 H 1.08999 * 109.47158 * 50.01216 * 1 2 3 31 31 H 1.08996 * 109.47185 * 290.00824 * 1 2 3 32 32 H 1.09008 * 115.54776 * 278.50362 * 4 2 1 33 33 H 1.09003 * 117.49899 * 359.97438 * 5 4 2 34 34 H 1.09002 * 117.50068 * 145.01685 * 5 4 2 35 35 H 1.08994 * 117.49460 * 252.50967 * 6 5 4 36 36 H 1.08997 * 117.49850 * 107.48534 * 6 5 4 37 37 H 1.08994 * 109.47281 * 42.36398 * 8 7 2 38 38 H 1.09004 * 109.47002 * 162.36545 * 8 7 2 39 39 H 0.96997 * 120.00294 * 180.02562 * 12 11 9 40 40 H 1.08998 * 109.47325 * 197.45852 * 17 7 2 41 41 H 1.09006 * 109.47297 * 317.45801 * 17 7 2 42 42 H 1.08002 * 119.96095 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.04015 * 180.27694 * 20 19 18 44 44 H 0.96996 * 120.00240 * 93.58939 * 22 21 20 45 45 H 1.09003 * 109.46978 * 65.09701 * 24 23 22 46 46 H 1.09003 * 109.47308 * 185.10061 * 24 23 22 47 47 H 1.08999 * 109.46890 * 305.10005 * 24 23 22 48 48 H 1.07995 * 120.04037 * 179.97438 * 27 21 20 49 49 H 1.08000 * 119.96082 * 179.97438 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.1448 -0.0380 -2.0578 6 6 1.7180 -0.0946 -2.6076 7 7 2.0198 -0.6925 1.1993 8 6 1.5983 -2.0997 1.2036 9 6 0.1513 -2.1895 1.6152 10 1 -0.3814 -1.2988 1.9140 11 6 -0.4924 -3.4088 1.6105 12 7 0.1562 -4.4934 1.2463 13 14 -2.2861 -3.5199 2.1200 14 1 -3.1102 -2.6757 1.2181 15 1 -2.7402 -4.9309 2.0285 16 1 -2.4341 -3.0417 3.5181 17 6 3.4799 -0.5800 1.3129 18 6 3.8398 0.7908 1.8253 19 6 4.1662 1.7967 0.9341 20 6 4.4910 3.0555 1.4000 21 6 4.5005 3.3077 2.7660 22 7 4.8344 4.5781 3.2409 23 16 6.4214 4.9746 3.4995 24 6 6.9607 3.8484 4.8153 25 8 7.0666 4.6553 2.2744 26 8 6.3751 6.3125 3.9761 27 6 4.1777 2.2935 3.6587 28 6 3.8481 1.0386 3.1857 29 1 -0.3632 -1.0121 -0.1783 30 1 -0.3633 0.6604 -0.7874 31 1 -0.3633 0.3516 0.9656 32 1 2.0597 -1.8093 -1.1889 33 1 3.5080 0.9254 -1.7000 34 1 3.8916 -0.6767 -2.5294 35 1 1.5263 -0.7706 -3.4408 36 1 1.1429 0.8313 -2.6111 37 1 1.7183 -2.5180 0.2043 38 1 2.2120 -2.6607 1.9085 39 1 -0.2967 -5.3511 1.2426 40 1 3.8498 -1.3355 2.0060 41 1 3.9334 -0.7324 0.3334 42 1 4.1633 1.5986 -0.1276 43 1 4.7415 3.8418 0.7033 44 1 4.1369 5.2281 3.4191 45 1 6.9342 2.8222 4.4488 46 1 7.9777 4.1009 5.1155 47 1 6.2943 3.9455 5.6724 48 1 4.1846 2.4862 4.7213 49 1 3.5975 0.2495 3.8792 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071897157.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:06 Heat of formation + Delta-G solvation = -4.806659 kcal Electronic energy + Delta-G solvation = -29687.007488 eV Core-core repulsion = 25742.530433 eV Total energy + Delta-G solvation = -3944.477055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 352.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.76482 -38.44489 -37.34114 -36.24245 -35.66307 -34.70420 -32.51359 -30.97417 -30.72551 -29.76937 -28.92053 -27.02476 -24.44626 -23.10560 -22.56565 -22.04410 -21.78402 -21.11280 -19.78598 -18.61870 -18.07405 -17.77510 -16.59895 -16.48266 -15.79429 -15.71659 -15.35502 -15.13206 -14.78976 -14.33566 -14.01631 -13.92075 -13.69486 -13.51289 -13.46717 -13.29271 -12.85561 -12.44159 -12.39273 -12.26761 -12.12958 -12.08693 -11.91087 -11.59935 -11.43423 -11.30195 -11.20173 -11.11383 -11.06921 -10.78790 -10.65560 -10.58046 -10.25750 -10.02120 -9.95263 -9.59678 -9.37430 -9.09127 -8.87846 -8.53686 -8.38613 -7.25013 -6.02268 -3.99443 -0.08091 1.25654 1.47255 2.37817 3.32127 3.36960 3.39480 3.47122 3.72016 3.92247 4.18224 4.41853 4.42681 4.66010 4.85245 4.96478 5.02190 5.07869 5.09159 5.18428 5.30759 5.32054 5.34120 5.46746 5.49673 5.56187 5.80551 5.87478 5.90480 5.99976 6.07147 6.17448 6.18573 6.20472 6.32126 6.37564 6.42005 6.45902 6.52873 6.69763 6.73325 6.82276 6.91556 7.09743 7.17281 7.37733 7.46941 7.84025 8.10716 8.17816 8.52759 9.05256 9.60795 11.07952 Molecular weight = 352.16amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.002602 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.127327 B =10757.498085 C =11755.041766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.125 3.875 3 H 0.061 0.939 4 C -0.172 4.172 5 C -0.191 4.191 6 C -0.176 4.176 7 N -0.520 5.520 8 C 0.186 3.814 9 C -0.496 4.496 10 H 0.069 0.931 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.277 1.277 17 C 0.080 3.920 18 C -0.041 4.041 19 C -0.113 4.113 20 C -0.097 4.097 21 C 0.101 3.899 22 N -1.062 6.062 23 S 2.610 3.390 24 C -0.670 4.670 25 O -0.949 6.949 26 O -0.962 6.962 27 C -0.121 4.121 28 C -0.093 4.093 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.057 0.943 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.009 0.991 38 H 0.022 0.978 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.045 0.955 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.421 0.579 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.130 0.870 48 H 0.124 0.876 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 14.556 2.759 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.016 3.984 3 H 0.079 0.921 4 C -0.192 4.192 5 C -0.228 4.228 6 C -0.214 4.214 7 N -0.243 5.243 8 C 0.061 3.939 9 C -0.534 4.534 10 H 0.087 0.913 11 C -0.148 4.148 12 N -0.541 5.541 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.203 1.203 17 C -0.048 4.048 18 C -0.042 4.042 19 C -0.132 4.132 20 C -0.118 4.118 21 C 0.007 3.993 22 N -0.818 5.818 23 S 2.703 3.297 24 C -0.821 4.821 25 O -0.939 6.939 26 O -0.952 6.952 27 C -0.142 4.142 28 C -0.112 4.112 29 H 0.106 0.894 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.027 0.973 38 H 0.040 0.960 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.144 0.856 43 H 0.144 0.856 44 H 0.259 0.741 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.148 0.852 48 H 0.142 0.858 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.718 15.153 2.701 19.345 hybrid contribution -1.083 -0.880 0.117 1.400 sum 10.636 14.273 2.819 18.021 Atomic orbital electron populations 1.21997 0.93847 1.03462 0.99855 1.21124 0.96172 0.95518 0.85620 0.92068 1.23312 1.01460 1.01105 0.93322 1.23016 0.91991 1.02122 1.05657 1.22768 0.98153 1.02772 0.97681 1.62428 1.06758 1.18650 1.36421 1.19917 0.96391 0.81167 0.96396 1.21270 0.95544 0.93574 1.43037 0.91274 1.24957 0.98062 0.95808 0.95950 1.69935 1.36655 0.98749 1.48789 0.86656 0.85347 0.76780 0.79213 1.20270 1.21569 1.20308 1.21151 0.91483 0.92347 0.99849 1.20184 0.94478 0.96265 0.93276 1.21142 0.99772 0.92327 1.00008 1.21376 0.98499 0.97445 0.94488 1.17147 1.05915 0.84171 0.92106 1.53055 1.26415 1.20619 1.81705 1.04989 0.73374 0.74893 0.76396 1.30498 1.12674 1.18741 1.20158 1.93630 1.74367 1.85269 1.40640 1.93617 1.85382 1.33144 1.83090 1.21382 1.00350 0.93170 0.99276 1.20997 0.98310 0.96430 0.95499 0.89423 0.95304 0.92390 0.86666 0.89406 0.89576 0.89498 0.89258 0.97320 0.95969 0.93019 0.90461 0.93650 0.85647 0.85590 0.74071 0.84942 0.85313 0.85155 0.85819 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 7.52 37.16 0.28 -2.26 16 2 C 0.12 2.19 2.45 -67.71 -0.17 2.02 16 3 H 0.06 1.01 6.35 -51.93 -0.33 0.68 16 4 C -0.17 -2.86 3.85 -90.62 -0.35 -3.21 16 5 C -0.19 -2.60 9.38 -26.73 -0.25 -2.85 16 6 C -0.18 -2.50 9.95 -26.73 -0.27 -2.77 16 7 N -0.52 -9.94 4.39 -229.52 -1.01 -10.95 16 8 C 0.19 4.36 4.51 -4.97 -0.02 4.33 16 9 C -0.50 -12.72 6.58 -34.44 -0.23 -12.95 16 10 H 0.07 1.77 5.91 -52.49 -0.31 1.46 16 11 C 0.05 1.41 5.46 -17.82 -0.10 1.32 16 12 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 13 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 C 0.08 1.28 5.03 -4.98 -0.03 1.26 16 18 C -0.04 -0.57 5.08 -104.58 -0.53 -1.10 16 19 C -0.11 -1.46 8.49 -39.61 -0.34 -1.80 16 20 C -0.10 -1.17 9.76 -39.38 -0.38 -1.56 16 21 C 0.10 1.08 5.54 -83.79 -0.46 0.62 16 22 N -1.06 -9.06 5.60 32.41 0.18 -8.88 16 23 S 2.61 22.79 6.07 -107.50 -0.65 22.14 16 24 C -0.67 -3.69 10.76 101.05 1.09 -2.61 16 25 O -0.95 -11.86 17.62 -57.54 -1.01 -12.88 16 26 O -0.96 -11.02 18.08 -57.54 -1.04 -12.06 16 27 C -0.12 -1.27 9.92 -39.38 -0.39 -1.66 16 28 C -0.09 -1.18 9.71 -39.61 -0.38 -1.57 16 29 H 0.09 1.91 6.06 -51.93 -0.31 1.60 16 30 H 0.03 0.47 7.98 -51.93 -0.41 0.05 16 31 H 0.06 1.14 7.10 -51.93 -0.37 0.77 16 32 H 0.12 2.26 5.80 -51.92 -0.30 1.95 16 33 H 0.09 1.10 5.93 -51.93 -0.31 0.79 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.09 1.20 8.03 -51.93 -0.42 0.79 16 37 H 0.01 0.23 5.38 -51.93 -0.28 -0.05 16 38 H 0.02 0.56 7.54 -51.93 -0.39 0.17 16 39 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 41 H 0.05 0.71 6.14 -51.93 -0.32 0.39 16 42 H 0.13 1.53 5.88 -52.49 -0.31 1.22 16 43 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.42 2.89 8.92 -34.47 -0.31 2.58 16 45 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 46 H 0.13 0.51 8.14 -51.92 -0.42 0.09 16 47 H 0.13 0.50 8.14 -51.92 -0.42 0.08 16 48 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 49 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -32.43 397.63 -11.63 -44.06 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -7.28 Total: 6.26 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -2.53 Total: -24.78 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: -0.09 Total: -44.56 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -2.05 Total: -24.94 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 22.79 SS G_CDS: -0.65 Total: 22.14 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.43 -11.63 -44.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071897157.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.253 kcal (2) G-P(sol) polarization free energy of solvation -32.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds