Wall clock time and date at job start Tue Mar 31 2020 05:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30890 * 1 3 3 Si 1.86801 * 119.99785 * 2 1 4 4 H 1.48498 * 109.47269 * 274.65509 * 3 2 1 5 5 H 1.48496 * 109.47308 * 34.65997 * 3 2 1 6 6 H 1.48506 * 109.46726 * 154.65560 * 3 2 1 7 7 C 1.39884 * 119.99691 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99855 * 162.15847 * 7 2 1 9 9 C 1.41215 * 120.00439 * 342.16062 * 7 2 1 10 10 C 1.40832 * 120.18001 * 155.14613 * 9 7 2 11 11 C 1.36438 * 119.80917 * 180.02562 * 10 9 7 12 12 C 1.39312 * 120.18981 * 359.97438 * 11 10 9 13 13 O 1.35669 * 119.82280 * 179.97438 * 12 11 10 14 14 C 1.42902 * 117.00170 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46883 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.46937 * 65.00807 * 15 14 13 17 17 C 1.38403 * 120.00314 * 179.97438 * 16 15 14 18 18 N 1.32515 * 119.21640 * 0.02562 * 17 16 15 19 19 C 1.32251 * 120.74127 * 179.72484 * 18 17 16 20 20 C 1.38627 * 119.19967 * 359.97438 * 19 18 17 21 21 C 1.38580 * 118.55409 * 0.02562 * 20 19 18 22 22 C 1.50708 * 120.39845 * 179.97438 * 21 20 19 23 23 F 1.39900 * 109.47059 * 89.99692 * 22 21 20 24 24 F 1.39903 * 109.47075 * 209.99818 * 22 21 20 25 25 F 1.39898 * 109.47104 * 329.99760 * 22 21 20 26 26 N 1.32288 * 119.20429 * 359.97438 * 21 20 19 27 27 C 1.39321 * 120.36050 * 0.25194 * 12 11 10 28 28 C 1.36445 * 120.18359 * 359.49042 * 27 12 11 29 29 H 0.97003 * 119.99924 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.09767 * 359.97438 * 10 9 7 31 31 H 1.08006 * 119.90760 * 179.97438 * 11 10 9 32 32 H 1.09002 * 109.46623 * 60.00326 * 14 13 12 33 33 H 1.08996 * 109.47314 * 300.00364 * 14 13 12 34 34 H 1.08998 * 109.47629 * 305.00605 * 15 14 13 35 35 H 1.09002 * 109.47091 * 185.00422 * 15 14 13 36 36 H 0.97006 * 120.00282 * 359.97438 * 16 15 14 37 37 H 1.08005 * 120.40185 * 179.97438 * 19 18 17 38 38 H 1.07999 * 120.72673 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.90744 * 179.71654 * 27 12 11 40 40 H 1.08000 * 120.09166 * 180.25550 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.3919 2.1033 -1.3954 5 1 1.4930 2.6222 0.7962 6 1 3.5862 1.4137 0.5994 7 6 2.0083 -1.2115 -0.0005 8 1 3.0493 -1.2339 -0.2871 9 6 1.3531 -2.4052 0.3736 10 6 1.8226 -3.6474 -0.0955 11 6 1.1836 -4.7960 0.2703 12 6 0.0700 -4.7426 1.1057 13 8 -0.5601 -5.8893 1.4643 14 6 -1.6952 -5.7645 2.3234 15 6 -2.2687 -7.1526 2.6155 16 7 -1.2911 -7.9346 3.3763 17 6 -1.5887 -9.2310 3.7589 18 7 -2.7624 -9.7496 3.4282 19 6 -3.0760 -10.9872 3.7734 20 6 -2.1598 -11.7426 4.4887 21 6 -0.9419 -11.1692 4.8180 22 6 0.0845 -11.9526 5.5952 23 9 0.9172 -12.6407 4.7062 24 9 0.8520 -11.0758 6.3695 25 9 -0.5630 -12.8684 6.4314 26 7 -0.6911 -9.9260 4.4419 27 6 -0.4037 -3.5175 1.5703 28 6 0.2271 -2.3599 1.2181 29 1 -0.4850 0.8401 -0.0004 30 1 2.6855 -3.6906 -0.7435 31 1 1.5420 -5.7495 -0.0888 32 1 -2.4546 -5.1534 1.8356 33 1 -1.3934 -5.2916 3.2579 34 1 -2.4882 -7.6601 1.6762 35 1 -3.1852 -7.0520 3.1969 36 1 -0.4351 -7.5438 3.6121 37 1 -4.0344 -11.4043 3.5014 38 1 -2.3904 -12.7556 4.7837 39 1 -1.2703 -3.4842 2.2139 40 1 -0.1389 -1.4114 1.5825 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071907732.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:39 Heat of formation + Delta-G solvation = -107.081582 kcal Electronic energy + Delta-G solvation = -29098.537786 eV Core-core repulsion = 24271.066060 eV Total energy + Delta-G solvation = -4827.471726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.109 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.52793 -48.08000 -47.95452 -41.43784 -38.99642 -37.01590 -35.93446 -34.42895 -33.43260 -32.13718 -29.77148 -29.50987 -28.49251 -27.71722 -24.90807 -24.21800 -23.72556 -22.39505 -21.07930 -20.34757 -19.29341 -19.09897 -18.89978 -17.87733 -17.43721 -17.18543 -16.89683 -15.99242 -15.74159 -15.56669 -15.31250 -14.85959 -14.78487 -14.71571 -14.42250 -14.36715 -14.12680 -14.11235 -14.05568 -13.96642 -13.58642 -12.99825 -12.86048 -12.45026 -12.32060 -11.91831 -11.64771 -11.46044 -11.41507 -11.27734 -11.12526 -11.07580 -10.85657 -10.61570 -10.01473 -9.85136 -9.69393 -9.43229 -9.06370 -8.45368 -7.71276 -7.07752 -6.78016 -4.30297 0.31534 0.71879 1.90194 2.56912 2.71943 2.91330 3.05466 3.09309 3.14964 3.17578 3.27307 3.51226 3.89189 3.91271 3.92585 3.99497 4.36592 4.50499 4.56702 4.72852 4.87015 5.04433 5.17224 5.47060 5.49441 5.61778 5.64783 5.82272 6.04359 6.21793 6.26352 6.63431 6.70602 6.83682 7.01804 7.06066 7.22549 7.34557 7.50226 7.84221 7.85314 7.95169 8.09299 8.36677 8.58887 8.85330 8.93294 10.16961 Molecular weight = 353.11amu Principal moments of inertia in cm(-1) A = 0.021632 B = 0.001700 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.092374 B =16464.349725 C =17145.258339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.462 4.462 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.197 4.197 11 C -0.110 4.110 12 C -0.014 4.014 13 O -0.328 6.328 14 C 0.052 3.948 15 C 0.140 3.860 16 N -0.678 5.678 17 C 0.577 3.423 18 N -0.547 5.547 19 C 0.208 3.792 20 C -0.256 4.256 21 C 0.138 3.862 22 C 0.524 3.476 23 F -0.167 7.167 24 F -0.161 7.161 25 F -0.168 7.168 26 N -0.536 5.536 27 C -0.172 4.172 28 C -0.135 4.135 29 H 0.280 0.720 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.423 0.577 37 H 0.181 0.819 38 H 0.156 0.844 39 H 0.094 0.906 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 -20.275 10.065 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.492 4.492 8 H 0.095 0.905 9 C 0.086 3.914 10 C -0.216 4.216 11 C -0.129 4.129 12 C -0.056 4.056 13 O -0.244 6.244 14 C -0.024 4.024 15 C 0.016 3.984 16 N -0.314 5.314 17 C 0.220 3.780 18 N -0.270 5.270 19 C 0.038 3.962 20 C -0.284 4.284 21 C -0.013 4.013 22 C 0.468 3.532 23 F -0.148 7.148 24 F -0.142 7.142 25 F -0.149 7.149 26 N -0.259 5.259 27 C -0.191 4.191 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.262 0.738 37 H 0.198 0.802 38 H 0.174 0.826 39 H 0.112 0.888 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.867 -19.151 9.599 22.821 hybrid contribution 0.482 0.200 0.487 0.714 sum -7.385 -18.951 10.086 22.703 Atomic orbital electron populations 1.69841 1.07537 1.29108 1.36039 1.25888 0.94726 1.01282 0.92326 0.86326 0.80761 0.80768 0.79032 1.19614 1.20100 1.18455 1.19477 0.98113 0.91202 1.40390 0.90454 1.17607 0.91802 0.92189 0.89766 1.20604 1.03267 0.92249 1.05528 1.19610 0.95584 0.97650 1.00042 1.18513 0.97824 0.83647 1.05658 1.85831 1.42366 1.31149 1.65032 1.22728 0.89619 0.95429 0.94667 1.21518 0.90680 0.89973 0.96182 1.44346 1.21137 1.08618 1.57280 1.19175 0.84670 0.87398 0.86779 1.68034 1.18692 1.14702 1.25553 1.23070 0.98336 0.87318 0.87523 1.22237 0.95346 1.04165 1.06613 1.20974 0.93109 0.91434 0.95823 1.17820 0.80118 0.77535 0.77695 1.93260 1.73015 1.80316 1.68190 1.93264 1.76554 1.68599 1.75754 1.93221 1.81331 1.67836 1.72525 1.67342 1.34578 1.07015 1.16924 1.20597 1.01300 0.92891 1.04308 1.20937 0.98527 0.96499 0.99468 0.90965 0.88197 0.88583 0.90800 0.92238 0.90181 0.89621 0.73780 0.80205 0.82616 0.88764 0.86146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.36 10.98 55.54 0.61 -19.75 16 2 C 0.07 1.85 5.13 -17.34 -0.09 1.76 16 3 Si 0.91 18.45 29.60 -169.99 -5.03 13.42 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.46 -12.09 9.04 -37.84 -0.34 -12.43 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.09 2.33 5.57 -106.81 -0.59 1.73 16 10 C -0.20 -4.78 9.74 -39.25 -0.38 -5.16 16 11 C -0.11 -2.50 9.92 -39.83 -0.40 -2.90 16 12 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 13 O -0.33 -6.09 10.07 -18.71 -0.19 -6.28 16 14 C 0.05 0.73 4.86 37.16 0.18 0.91 16 15 C 0.14 1.61 6.03 -4.04 -0.02 1.59 16 16 N -0.68 -8.44 5.65 -62.31 -0.35 -8.79 16 17 C 0.58 7.24 8.43 -322.80 -2.72 4.52 16 18 N -0.55 -5.95 9.59 -13.93 -0.13 -6.08 16 19 C 0.21 1.56 11.30 -17.23 -0.19 1.37 16 20 C -0.26 -1.95 9.51 -39.31 -0.37 -2.32 16 21 C 0.14 1.46 6.32 -82.27 -0.52 0.94 16 22 C 0.52 5.21 3.45 36.01 0.12 5.33 16 23 F -0.17 -1.73 17.30 2.25 0.04 -1.69 16 24 F -0.16 -1.84 17.07 2.25 0.04 -1.81 16 25 F -0.17 -1.42 16.53 2.25 0.04 -1.38 16 26 N -0.54 -6.89 10.12 -10.15 -0.10 -6.99 16 27 C -0.17 -3.86 8.96 -39.83 -0.36 -4.22 16 28 C -0.13 -3.41 8.64 -39.25 -0.34 -3.75 16 29 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.10 1.98 8.06 -52.48 -0.42 1.56 16 32 H 0.07 1.00 7.63 -51.93 -0.40 0.60 16 33 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.42 5.45 8.59 -40.82 -0.35 5.10 16 37 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 38 H 0.16 0.71 7.68 -52.49 -0.40 0.31 16 39 H 0.09 1.84 6.27 -52.49 -0.33 1.51 16 40 H 0.12 3.14 6.18 -52.49 -0.32 2.81 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -29.37 362.51 -9.77 -39.14 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.86 Total: 7.93 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -6.29 Total: -13.19 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.02 Total: -41.61 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.19 Total: -6.28 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.11 Total: -4.88 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.37 -9.77 -39.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071907732.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.938 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds