Wall clock time and date at job start Tue Mar 31 2020 06:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34960 * 125.97985 * 124.71356 * 10 9 7 12 12 C 1.35243 * 107.86064 * 179.83521 * 11 10 9 13 13 C 1.40395 * 107.86535 * 0.42509 * 12 11 10 14 14 N 1.40196 * 125.97533 * 179.71691 * 13 12 11 15 15 C 1.34787 * 119.99563 * 359.97438 * 14 13 12 16 16 O 1.21589 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99663 * 179.97438 * 15 14 13 18 18 C 1.46500 * 119.99738 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47049 * 179.97438 * 18 17 15 20 20 C 1.50699 * 109.47042 * 180.02562 * 19 18 17 21 21 C 1.34237 * 126.50292 * 265.03294 * 20 19 18 22 22 N 1.36829 * 109.93286 * 180.02562 * 21 20 19 23 23 H 0.96995 * 125.06698 * 180.02562 * 22 21 20 24 24 C 1.37689 * 109.87232 * 359.97438 * 22 21 20 25 25 C 1.39122 * 133.50406 * 180.02562 * 24 22 21 26 26 C 1.37748 * 119.77970 * 179.97438 * 25 24 22 27 27 C 1.38838 * 120.66507 * 359.97438 * 26 25 24 28 28 C 1.36624 * 120.52464 * 0.02562 * 27 26 25 29 29 C 1.39639 * 119.76830 * 359.69612 * 28 27 26 30 30 N 1.31213 * 108.05618 * 359.73465 * 13 12 11 31 31 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 33 33 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 34 34 H 1.08007 * 126.06930 * 359.97438 * 11 10 9 35 35 H 1.08003 * 126.06501 * 180.12029 * 12 11 10 36 36 H 0.96998 * 120.00770 * 179.97438 * 14 13 12 37 37 H 0.96998 * 120.00102 * 0.02562 * 17 15 14 38 38 H 1.08994 * 109.47484 * 300.00768 * 18 17 15 39 39 H 1.09001 * 109.46808 * 60.00196 * 18 17 15 40 40 H 1.08999 * 109.46986 * 300.00391 * 19 18 17 41 41 H 1.09001 * 109.46814 * 60.00848 * 19 18 17 42 42 H 1.08000 * 125.03608 * 359.97438 * 21 20 19 43 43 H 1.08006 * 120.11144 * 359.95075 * 25 24 22 44 44 H 1.08001 * 119.66971 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.73560 * 179.97438 * 27 26 25 46 46 H 1.08008 * 120.11410 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6215 0.8835 12 6 3.2626 -5.4440 0.5300 13 6 3.8667 -4.9131 -0.6208 14 7 4.9608 -5.4620 -1.3044 15 6 5.5275 -6.6027 -0.8635 16 8 5.0902 -7.1553 0.1273 17 7 6.5789 -7.1307 -1.5210 18 6 7.1953 -8.3702 -1.0415 19 6 8.3585 -8.7499 -1.9600 20 6 8.9921 -10.0253 -1.4671 21 6 10.0611 -10.1264 -0.6616 22 7 10.3477 -11.4441 -0.4299 23 1 11.0764 -11.7671 0.1227 24 6 9.4468 -12.2433 -1.0973 25 6 9.2832 -13.6209 -1.2027 26 6 8.2573 -14.1315 -1.9670 27 6 7.3824 -13.2850 -2.6345 28 6 7.5247 -11.9291 -2.5447 29 6 8.5542 -11.3898 -1.7707 30 7 3.2287 -3.8132 -0.9445 31 1 -0.4850 -0.8400 0.0004 32 1 0.6281 -2.5591 0.8866 33 1 0.6207 -2.5548 -0.8933 34 1 1.5912 -4.7504 1.7304 35 1 3.5584 -6.3462 1.0448 36 1 5.3099 -5.0210 -2.0946 37 1 6.9280 -6.6896 -2.3112 38 1 7.5659 -8.2229 -0.0271 39 1 6.4541 -9.1694 -1.0450 40 1 7.9873 -8.8973 -2.9742 41 1 9.0997 -7.9507 -1.9568 42 1 10.6138 -9.2913 -0.2570 43 1 9.9586 -14.2877 -0.6872 44 1 8.1322 -15.2012 -2.0479 45 1 6.5835 -13.7015 -3.2299 46 1 6.8406 -11.2767 -3.0671 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071912178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:14 Heat of formation + Delta-G solvation = 108.102157 kcal Electronic energy + Delta-G solvation = -28499.112551 eV Core-core repulsion = 24390.954479 eV Total energy + Delta-G solvation = -4108.158073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64599 -40.71781 -39.54829 -37.30215 -35.91668 -34.67134 -33.67914 -33.08361 -31.03178 -30.40329 -29.63984 -29.30730 -28.06455 -26.15978 -23.88636 -23.19627 -22.90760 -22.12918 -21.59091 -20.57406 -20.06112 -19.53565 -18.28047 -17.74870 -17.14560 -16.79514 -16.75922 -15.90707 -15.71828 -15.63683 -14.91853 -14.68322 -14.61698 -14.27630 -14.26563 -14.07871 -13.87104 -13.75546 -13.14087 -13.03856 -12.80086 -12.39095 -12.35384 -12.23843 -12.08106 -11.98438 -11.78716 -11.51380 -11.12526 -11.11571 -10.78673 -10.40162 -10.16281 -10.08884 -9.94665 -9.68102 -9.21256 -8.94607 -8.57662 -8.55411 -8.12927 -8.02564 -7.42357 -6.55550 -4.29373 0.77631 1.29078 2.19157 2.47545 2.64727 2.74232 3.11306 3.38127 3.42228 3.54888 3.58571 3.62241 3.83931 4.29749 4.32770 4.41616 4.43462 4.64609 4.72523 4.83192 4.83271 4.94302 5.13631 5.18206 5.25635 5.27084 5.45723 5.46903 5.52174 5.64453 5.75785 5.81052 5.86894 6.14182 6.20773 6.27475 6.30662 6.35616 6.41030 6.48614 6.52077 6.70031 6.80489 6.81619 7.03217 7.12070 7.47773 7.67045 7.89303 7.96634 8.38314 8.59986 8.62461 8.67783 9.38912 10.81948 Molecular weight = 353.16amu Principal moments of inertia in cm(-1) A = 0.025497 B = 0.001482 C = 0.001441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.910967 B =18884.898336 C =19429.097023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.022 3.978 3 Si 1.080 2.920 4 H -0.286 1.286 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.320 5.320 11 C 0.050 3.950 12 C -0.284 4.284 13 C 0.278 3.722 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.567 6.567 17 N -0.745 5.745 18 C 0.146 3.854 19 C -0.054 4.054 20 C -0.168 4.168 21 C 0.059 3.941 22 N -0.596 5.596 23 H 0.416 0.584 24 C 0.094 3.906 25 C -0.132 4.132 26 C -0.099 4.099 27 C -0.147 4.147 28 C -0.068 4.068 29 C -0.100 4.100 30 N -0.306 5.306 31 H 0.267 0.733 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.397 0.603 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.171 0.829 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.095 -26.426 -4.392 34.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.182 4.182 3 Si 0.907 3.093 4 H -0.212 1.212 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.645 4.645 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.101 5.101 11 C -0.100 4.100 12 C -0.315 4.315 13 C 0.024 3.976 14 N -0.294 5.294 15 C 0.412 3.588 16 O -0.443 6.443 17 N -0.402 5.402 18 C 0.021 3.979 19 C -0.092 4.092 20 C -0.176 4.176 21 C -0.067 4.067 22 N -0.198 5.198 23 H 0.253 0.747 24 C -0.013 4.013 25 C -0.153 4.153 26 C -0.118 4.118 27 C -0.166 4.166 28 C -0.087 4.087 29 C -0.104 4.104 30 N -0.137 5.137 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.184 0.816 35 H 0.180 0.820 36 H 0.241 0.759 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.188 0.812 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.442 -24.261 -4.208 32.651 hybrid contribution 0.944 -2.066 0.140 2.276 sum 22.386 -26.328 -4.068 34.797 Atomic orbital electron populations 1.70818 1.06781 1.30459 1.46115 1.25919 0.96325 1.02798 0.93188 0.83381 0.74672 0.74338 0.76925 1.21239 1.21273 1.20741 1.22145 0.95429 0.90462 1.56493 0.91801 1.19742 0.86334 0.82866 0.97929 1.48741 1.23481 1.19582 1.18327 1.22550 1.00520 0.90212 0.96719 1.21530 1.02071 1.06302 1.01598 1.18790 0.90714 0.93861 0.94235 1.41400 1.31607 1.25120 1.31318 1.15629 0.80090 0.80107 0.83008 1.90870 1.64513 1.62257 1.26626 1.45047 1.34122 1.28310 1.32734 1.21202 0.94233 0.84754 0.97667 1.20057 0.96538 0.93519 0.99117 1.19931 0.99459 0.92613 1.05551 1.21668 0.98963 0.85655 1.00430 1.41733 1.28459 1.05165 1.44439 0.74731 1.18266 0.92717 0.92421 0.97873 1.20027 1.00950 0.90932 1.03368 1.20825 0.94532 0.99626 0.96852 1.20667 1.00592 0.93270 1.02064 1.20321 0.96214 0.95023 0.97133 1.19078 0.97583 0.92325 1.01429 1.77340 1.03787 1.16313 1.16250 0.92243 0.93664 0.94816 0.81584 0.82047 0.75859 0.76977 0.91466 0.91351 0.90409 0.90427 0.81155 0.86374 0.85816 0.85995 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.56 13.65 55.43 0.76 -25.81 16 2 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 3 Si 1.08 25.13 29.90 -169.99 -5.08 20.04 16 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.61 -17.26 9.24 -34.44 -0.32 -17.58 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.41 5.57 -5.19 -0.03 6.38 16 10 N -0.32 -7.62 3.67 -62.56 -0.23 -7.85 16 11 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 12 C -0.28 -5.83 9.61 -39.84 -0.38 -6.22 16 13 C 0.28 5.75 8.11 -154.36 -1.25 4.50 16 14 N -0.64 -10.19 5.46 -15.50 -0.08 -10.27 16 15 C 0.71 10.68 8.53 -86.91 -0.74 9.93 16 16 O -0.57 -10.58 13.47 5.29 0.07 -10.51 16 17 N -0.75 -7.39 5.56 -65.22 -0.36 -7.75 16 18 C 0.15 1.33 5.66 -4.04 -0.02 1.31 16 19 C -0.05 -0.34 5.86 -27.88 -0.16 -0.51 16 20 C -0.17 -1.29 5.57 -102.71 -0.57 -1.86 16 21 C 0.06 0.36 11.73 -16.73 -0.20 0.17 16 22 N -0.60 -3.58 6.07 -10.65 -0.06 -3.64 16 23 H 0.42 1.27 8.96 -40.82 -0.37 0.90 16 24 C 0.09 0.78 7.28 -83.99 -0.61 0.17 16 25 C -0.13 -0.96 10.08 -39.43 -0.40 -1.36 16 26 C -0.10 -0.70 10.01 -39.54 -0.40 -1.10 16 27 C -0.15 -1.13 9.97 -39.94 -0.40 -1.53 16 28 C -0.07 -0.59 10.05 -39.64 -0.40 -0.99 16 29 C -0.10 -0.91 6.35 -105.14 -0.67 -1.58 16 30 N -0.31 -7.22 12.42 31.44 0.39 -6.83 16 31 H 0.27 7.67 7.22 -40.82 -0.29 7.38 16 32 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.03 0.90 8.00 -51.93 -0.42 0.48 16 34 H 0.17 2.80 8.06 -52.48 -0.42 2.38 16 35 H 0.16 3.27 5.91 -52.48 -0.31 2.96 16 36 H 0.41 5.13 8.84 -40.82 -0.36 4.77 16 37 H 0.40 2.65 8.49 -40.82 -0.35 2.30 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.17 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 LS Contribution 396.12 15.07 5.97 5.97 Total: -1.00 -37.08 396.12 -11.42 -48.49 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.94 Total: 7.07 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -6.84 Total: -8.91 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: 0.41 Total: -62.16 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.08 -11.42 -48.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071912178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.597 kcal (2) G-P(sol) polarization free energy of solvation -37.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds