Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99817 * 2 1 4 4 H 1.48494 * 109.47291 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46805 * 300.00191 * 3 2 1 6 6 H 1.48496 * 109.47129 * 59.99837 * 3 2 1 7 7 C 1.37877 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99624 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00063 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.47144 * 179.97438 * 9 7 2 11 11 C 1.34772 * 119.99937 * 98.90888 * 10 9 7 12 12 O 1.21565 * 120.00117 * 187.21941 * 11 10 9 13 13 C 1.47812 * 120.00250 * 6.94394 * 11 10 9 14 14 C 1.39597 * 120.14198 * 329.83234 * 13 11 10 15 15 C 1.37953 * 119.84622 * 179.74417 * 14 13 11 16 16 C 1.38365 * 120.15140 * 0.53477 * 15 14 13 17 17 C 1.50694 * 119.85449 * 179.72377 * 16 15 14 18 18 N 1.46506 * 109.47091 * 270.01901 * 17 16 15 19 19 C 1.34774 * 120.00332 * 180.02562 * 18 17 16 20 20 N 1.34774 * 119.99869 * 180.02562 * 19 18 17 21 21 O 1.21591 * 119.99632 * 359.97438 * 19 18 17 22 22 C 1.38365 * 120.29278 * 359.73958 * 16 15 14 23 23 C 1.37952 * 120.14358 * 359.97438 * 22 16 15 24 24 C 1.39843 * 120.00020 * 278.91186 * 10 9 7 25 25 C 1.38889 * 120.07164 * 7.60750 * 24 10 9 26 26 C 1.38116 * 119.92637 * 179.74798 * 25 24 10 27 27 C 1.38285 * 120.06992 * 0.52672 * 26 25 24 28 28 C 1.38289 * 120.14782 * 359.72880 * 27 26 25 29 29 C 1.38111 * 120.07132 * 0.02562 * 28 27 26 30 30 H 0.96994 * 120.00297 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46975 * 59.99934 * 9 7 2 32 32 H 1.09001 * 109.46331 * 300.00127 * 9 7 2 33 33 H 1.07994 * 120.07398 * 0.02736 * 14 13 11 34 34 H 1.08010 * 119.92703 * 180.27723 * 15 14 13 35 35 H 1.08996 * 109.47331 * 30.01687 * 17 16 15 36 36 H 1.08999 * 109.47676 * 150.01941 * 17 16 15 37 37 H 0.97000 * 119.99507 * 359.97438 * 18 17 16 38 38 H 0.96995 * 120.00489 * 359.97438 * 20 19 18 39 39 H 0.97008 * 119.99408 * 179.97438 * 20 19 18 40 40 H 1.07992 * 119.92675 * 180.02562 * 22 16 15 41 41 H 1.08001 * 120.07081 * 179.97438 * 23 22 16 42 42 H 1.07994 * 120.03988 * 359.97438 * 25 24 10 43 43 H 1.07996 * 119.96479 * 180.27736 * 26 25 24 44 44 H 1.07997 * 119.92909 * 179.69966 * 27 26 25 45 45 H 1.08000 * 119.96585 * 179.97438 * 28 27 26 46 46 H 1.07998 * 120.03719 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.5037 -4.2422 1.1536 12 8 3.3879 -5.0762 1.1783 13 6 1.7624 -3.9145 2.3897 14 6 1.2464 -2.6311 2.5782 15 6 0.5510 -2.3333 3.7318 16 6 0.3739 -3.3001 4.7057 17 6 -0.3815 -2.9657 5.9660 18 7 0.5530 -2.4655 6.9773 19 6 0.0992 -2.1021 8.1932 20 7 0.9589 -1.6414 9.1233 21 8 -1.0860 -2.1890 8.4506 22 6 0.8877 -4.5724 4.5277 23 6 1.5800 -4.8851 3.3761 24 6 2.8002 -4.0221 -1.1959 25 6 2.6164 -3.2796 -2.3552 26 6 3.2117 -3.6840 -3.5341 27 6 3.9810 -4.8327 -3.5634 28 6 4.1617 -5.5771 -2.4120 29 6 3.5733 -5.1755 -1.2288 30 1 -0.4850 0.8400 -0.0004 31 1 0.6248 -2.5571 -0.8896 32 1 0.6242 -2.5566 0.8903 33 1 1.3874 -1.8745 1.8206 34 1 0.1474 -1.3421 3.8770 35 1 -1.1273 -2.2007 5.7505 36 1 -0.8774 -3.8611 6.3409 37 1 1.4985 -2.3965 6.7720 38 1 1.9043 -1.5717 8.9178 39 1 0.6321 -1.3795 9.9984 40 1 0.7456 -5.3226 5.2914 41 1 1.9809 -5.8785 3.2386 42 1 2.0117 -2.3851 -2.3341 43 1 3.0728 -3.1046 -4.4348 44 1 4.4415 -5.1494 -4.4875 45 1 4.7628 -6.4740 -2.4384 46 1 3.7144 -5.7576 -0.3301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072281053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = 22.993913 kcal Electronic energy + Delta-G solvation = -30482.342689 eV Core-core repulsion = 26338.201295 eV Total energy + Delta-G solvation = -4144.141394 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 353.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63382 -39.93718 -38.79156 -37.55536 -35.65266 -34.81904 -33.76774 -32.95619 -31.43276 -30.77355 -30.32408 -29.16783 -27.67681 -26.30015 -23.56372 -23.06856 -22.44145 -21.75290 -21.28283 -20.88088 -19.46701 -18.47727 -17.55353 -17.05766 -16.89810 -16.55136 -15.96014 -15.60028 -15.42652 -14.94914 -14.87150 -14.77500 -14.45529 -14.20758 -14.09270 -13.73531 -13.52391 -13.23185 -12.92194 -12.83432 -12.64671 -12.53130 -12.42325 -12.06500 -11.66508 -11.55920 -11.16284 -11.13507 -10.95404 -10.63405 -10.49036 -10.37313 -10.23722 -9.91753 -9.87818 -9.32699 -9.12737 -8.98492 -8.89805 -8.65160 -8.36594 -8.35302 -7.24874 -6.44707 -4.56161 1.00960 1.68397 1.90090 1.98706 2.82472 3.07752 3.09969 3.18154 3.21532 3.29293 3.54069 4.07298 4.14582 4.41726 4.48766 4.66963 4.85375 4.96404 5.05110 5.24636 5.41781 5.43972 5.51912 5.62268 5.68603 5.72861 5.93088 6.04400 6.11981 6.13267 6.15052 6.30447 6.35600 6.48082 6.51254 6.58922 6.68274 6.73474 6.75893 6.83713 6.89635 7.00020 7.01142 7.10308 7.21232 7.26839 7.49565 7.68577 7.74809 7.81638 8.01601 8.48677 8.51305 8.66043 9.12656 10.59041 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.003101 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.923239 B = 9028.048329 C =11113.678533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.197 3.803 10 N -0.528 5.528 11 C 0.557 3.443 12 O -0.540 6.540 13 C -0.127 4.127 14 C -0.094 4.094 15 C -0.111 4.111 16 C -0.096 4.096 17 C 0.180 3.820 18 N -0.739 5.739 19 C 0.705 3.295 20 N -0.869 5.869 21 O -0.598 6.598 22 C -0.124 4.124 23 C -0.069 4.069 24 C 0.169 3.831 25 C -0.139 4.139 26 C -0.106 4.106 27 C -0.160 4.160 28 C -0.110 4.110 29 C -0.172 4.172 30 H 0.271 0.729 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.204 0.796 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.397 0.603 39 H 0.413 0.587 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.142 0.858 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.202 -4.976 7.558 9.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.585 4.585 8 H 0.087 0.913 9 C 0.079 3.921 10 N -0.245 5.245 11 C 0.349 3.651 12 O -0.421 6.421 13 C -0.130 4.130 14 C -0.111 4.111 15 C -0.129 4.129 16 C -0.097 4.097 17 C 0.056 3.944 18 N -0.395 5.395 19 C 0.403 3.597 20 N -0.437 5.437 21 O -0.476 6.476 22 C -0.143 4.143 23 C -0.088 4.088 24 C 0.073 3.927 25 C -0.159 4.159 26 C -0.125 4.125 27 C -0.179 4.179 28 C -0.129 4.129 29 C -0.192 4.192 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.220 0.780 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.233 0.767 38 H 0.225 0.775 39 H 0.245 0.755 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.160 0.840 43 H 0.135 0.865 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.358 -5.377 7.688 9.673 hybrid contribution 1.152 1.277 -0.028 1.720 sum 3.510 -4.100 7.660 9.371 Atomic orbital electron populations 1.69926 1.05945 1.27980 1.47505 1.24963 0.94908 0.99456 0.94002 0.86425 0.80370 0.82716 0.78118 1.19360 1.20492 1.20493 1.21401 0.94131 0.89733 1.53230 0.91332 1.20634 0.88114 0.82311 1.01079 1.45838 1.41519 1.32545 1.04635 1.18463 0.82633 0.80485 0.83491 1.90433 1.31555 1.35082 1.85039 1.19906 1.02172 0.95728 0.95165 1.23465 0.91598 0.97951 0.98083 1.21155 0.99424 0.99104 0.93245 1.20018 0.99454 0.94479 0.95705 1.20077 0.90459 0.99823 0.84017 1.45189 1.11728 1.70229 1.12327 1.15978 0.85137 0.77955 0.80663 1.42987 1.10894 1.72852 1.17012 1.90971 1.14852 1.61587 1.80222 1.20837 0.99615 0.96114 0.97736 1.21118 0.96469 0.98963 0.92249 1.18013 0.94991 0.93709 0.85980 1.21190 1.02563 1.00797 0.91399 1.20881 0.97650 0.96642 0.97342 1.20985 1.01911 0.96996 0.98000 1.20982 0.99825 0.99441 0.92631 1.22397 0.99055 0.96946 1.00792 0.91949 0.93940 0.90515 0.77986 0.85427 0.90461 0.90735 0.76677 0.77541 0.75503 0.85860 0.85396 0.83999 0.86480 0.87136 0.86772 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.50 13.29 55.43 0.74 -20.76 16 2 C 0.07 1.71 5.35 -17.82 -0.10 1.62 16 3 Si 0.90 18.90 29.54 -169.99 -5.02 13.88 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.55 -12.84 6.61 -34.44 -0.23 -13.07 16 8 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 9 C 0.20 4.34 4.02 -5.19 -0.02 4.32 16 10 N -0.53 -11.12 2.70 -115.81 -0.31 -11.44 16 11 C 0.56 11.39 7.36 -12.35 -0.09 11.30 16 12 O -0.54 -11.45 13.26 5.31 0.07 -11.38 16 13 C -0.13 -2.29 5.59 -104.97 -0.59 -2.87 16 14 C -0.09 -1.71 7.49 -39.18 -0.29 -2.00 16 15 C -0.11 -1.70 9.68 -39.64 -0.38 -2.09 16 16 C -0.10 -1.25 5.25 -104.53 -0.55 -1.80 16 17 C 0.18 2.14 5.79 -5.19 -0.03 2.11 16 18 N -0.74 -7.79 5.55 -66.42 -0.37 -8.16 16 19 C 0.70 8.38 8.84 -86.92 -0.77 7.61 16 20 N -0.87 -6.40 8.88 27.63 0.25 -6.15 16 21 O -0.60 -9.82 17.18 5.29 0.09 -9.73 16 22 C -0.12 -1.59 9.68 -39.64 -0.38 -1.98 16 23 C -0.07 -1.05 9.60 -39.18 -0.38 -1.42 16 24 C 0.17 3.47 6.43 -83.72 -0.54 2.93 16 25 C -0.14 -2.70 8.95 -39.39 -0.35 -3.06 16 26 C -0.11 -1.77 10.04 -39.61 -0.40 -2.16 16 27 C -0.16 -2.47 10.04 -39.55 -0.40 -2.87 16 28 C -0.11 -1.80 10.04 -39.61 -0.40 -2.20 16 29 C -0.17 -3.30 8.96 -39.38 -0.35 -3.65 16 30 H 0.27 6.34 8.31 -40.82 -0.34 6.01 16 31 H 0.04 1.00 7.09 -51.93 -0.37 0.63 16 32 H 0.08 1.70 3.96 -52.31 -0.21 1.49 16 33 H 0.20 4.23 3.13 -52.49 -0.16 4.07 16 34 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.40 3.45 8.48 -40.82 -0.35 3.10 16 38 H 0.40 1.79 8.84 -40.82 -0.36 1.43 16 39 H 0.41 2.58 8.93 -40.82 -0.36 2.22 16 40 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.82 7.93 -52.49 -0.42 1.40 16 42 H 0.14 2.93 6.05 -52.49 -0.32 2.61 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.17 3.35 4.76 -54.93 -0.26 3.09 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -29.27 383.18 -10.33 -39.60 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -5.30 Total: 17.66 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -6.24 Total: -9.30 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.30 Total: -46.51 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.16 Total: -21.11 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.27 -10.33 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072281053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.595 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds