Wall clock time and date at job start Tue Mar 31 2020 04:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99864 * 2 1 4 4 H 1.48497 * 109.47586 * 270.00364 * 3 2 1 5 5 H 1.48500 * 109.47027 * 30.00637 * 3 2 1 6 6 H 1.48506 * 109.47009 * 150.00079 * 3 2 1 7 7 C 1.37881 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00192 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99863 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47534 * 175.05713 * 9 7 2 11 11 C 1.46902 * 110.99887 * 295.14673 * 10 9 7 12 12 C 1.53237 * 109.34205 * 187.24840 * 11 10 9 13 13 N 1.47073 * 108.52352 * 306.17181 * 12 11 10 14 14 C 1.34780 * 120.88158 * 231.18930 * 13 12 11 15 15 O 1.21563 * 119.99619 * 5.74832 * 14 13 12 16 16 C 1.47788 * 120.00082 * 185.75932 * 14 13 12 17 17 C 1.39616 * 120.15548 * 53.85521 * 16 14 13 18 18 C 1.37898 * 119.86330 * 179.72652 * 17 16 14 19 19 C 1.38414 * 120.17334 * 359.97438 * 18 17 16 20 20 C 1.38278 * 120.31439 * 0.02562 * 19 18 17 21 21 C 1.38115 * 120.12991 * 359.97438 * 20 19 18 22 22 Br 1.89103 * 120.08762 * 180.02562 * 21 20 19 23 23 C 1.47079 * 118.23985 * 51.45456 * 13 12 11 24 24 C 1.46899 * 110.99999 * 59.44221 * 10 9 7 25 25 H 0.97000 * 120.00009 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47614 * 55.05475 * 9 7 2 27 27 H 1.09008 * 109.47156 * 295.05175 * 9 7 2 28 28 H 1.09002 * 109.49412 * 67.28662 * 11 10 9 29 29 H 1.08997 * 109.48987 * 307.21094 * 11 10 9 30 30 H 1.08998 * 109.62948 * 186.45329 * 12 11 10 31 31 H 1.09006 * 109.62700 * 65.88141 * 12 11 10 32 32 H 1.08004 * 120.06390 * 359.75003 * 17 16 14 33 33 H 1.08004 * 119.91510 * 179.97438 * 18 17 16 34 34 H 1.08008 * 119.84167 * 179.97438 * 19 18 17 35 35 H 1.07996 * 119.93723 * 179.97438 * 20 19 18 36 36 H 1.09001 * 109.62810 * 68.25182 * 23 13 12 37 37 H 1.08997 * 109.62978 * 188.83829 * 23 13 12 38 38 H 1.09000 * 109.49779 * 292.71332 * 24 10 9 39 39 H 1.08995 * 109.49431 * 52.79354 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2012 -3.6130 -0.1214 11 6 2.8919 -3.5788 -1.4175 12 6 3.7343 -4.8489 -1.5773 13 7 4.6152 -4.9757 -0.4064 14 6 5.9401 -5.1727 -0.5556 15 8 6.4379 -5.1435 -1.6643 16 6 6.7877 -5.4245 0.6286 17 6 6.4644 -6.4520 1.5169 18 6 7.2627 -6.6852 2.6169 19 6 8.3830 -5.9040 2.8417 20 6 8.7099 -4.8844 1.9666 21 6 7.9194 -4.6397 0.8609 22 35 8.3681 -3.2455 -0.3354 23 6 4.0111 -4.8879 0.9317 24 6 3.1586 -3.6104 0.9927 25 1 -0.4850 0.8400 0.0004 26 1 0.5600 -2.5190 -0.8443 27 1 0.6922 -2.5969 0.9291 28 1 3.5409 -2.7041 -1.4609 29 1 2.1565 -3.5267 -2.2202 30 1 4.3368 -4.7771 -2.4828 31 1 3.0789 -5.7177 -1.6383 32 1 5.5911 -7.0631 1.3426 33 1 7.0132 -7.4796 3.3048 34 1 9.0042 -6.0911 3.7052 35 1 9.5852 -4.2784 2.1482 36 1 3.3817 -5.7604 1.1073 37 1 4.7967 -4.8418 1.6858 38 1 3.8039 -2.7352 0.9159 39 1 2.6167 -3.5812 1.9379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072434090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:35 Heat of formation + Delta-G solvation = 11.324655 kcal Electronic energy + Delta-G solvation = -23232.862742 eV Core-core repulsion = 19800.947612 eV Total energy + Delta-G solvation = -3431.915130 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 352.053 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49510 -38.74292 -37.38230 -34.49099 -32.54618 -32.45118 -31.74011 -30.42884 -29.42879 -28.10452 -25.52977 -24.00362 -23.27595 -22.53957 -22.11890 -20.54464 -19.02666 -17.51665 -16.55689 -16.33779 -16.05753 -15.69100 -14.86263 -14.76600 -14.62502 -14.41620 -13.87038 -13.75740 -13.57751 -13.39543 -13.33069 -12.65711 -12.18267 -12.07394 -11.85572 -11.51614 -11.16625 -11.14872 -11.00772 -10.95896 -10.70079 -10.61397 -10.32152 -10.26207 -9.93752 -9.71276 -9.64991 -9.22879 -8.93400 -8.47416 -8.43798 -7.28402 -6.07526 -4.16702 0.62296 0.87041 1.50720 2.68067 3.04767 3.25339 3.32384 3.35859 3.38785 4.32964 4.37731 4.48529 4.62066 4.88262 4.91499 5.00278 5.19956 5.23004 5.31446 5.46235 5.47882 5.60126 5.69639 5.80798 5.83960 5.88525 5.99330 6.02893 6.08538 6.38911 6.39933 6.59318 6.70615 6.73427 7.18075 7.46324 7.50939 7.84218 7.94467 8.15694 8.21640 8.23147 8.93078 9.50946 10.97686 Molecular weight = 352.05amu Principal moments of inertia in cm(-1) A = 0.012781 B = 0.003991 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.182102 B = 7013.663498 C = 7855.671503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.056 0.944 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.050 3.950 12 C 0.116 3.884 13 N -0.596 5.596 14 C 0.553 3.447 15 O -0.523 6.523 16 C -0.093 4.093 17 C -0.084 4.084 18 C -0.110 4.110 19 C -0.099 4.099 20 C -0.097 4.097 21 C -0.053 4.053 22 Br -0.028 7.028 23 C 0.107 3.893 24 C 0.050 3.950 25 H 0.263 0.737 26 H 0.036 0.964 27 H 0.030 0.970 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.465 -13.603 5.711 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.714 3.286 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.079 4.079 12 C -0.006 4.006 13 N -0.329 5.329 14 C 0.339 3.661 15 O -0.399 6.399 16 C -0.098 4.098 17 C -0.103 4.103 18 C -0.128 4.128 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.134 4.134 22 Br 0.058 6.942 23 C -0.016 4.016 24 C -0.080 4.080 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 16.440 -13.363 4.666 21.694 hybrid contribution 0.716 1.583 0.368 1.776 sum 17.157 -11.780 5.034 21.412 Atomic orbital electron populations 1.69932 1.05992 1.26901 1.50010 1.24933 0.94733 0.99109 0.94782 0.86677 0.79955 0.83665 0.78259 1.20577 1.21071 1.19946 1.21734 0.93291 0.92080 1.51927 0.92577 1.19766 0.90681 0.85331 0.97985 1.62503 1.16462 1.47001 1.00428 1.22236 0.96778 0.95229 0.93661 1.21883 0.91744 0.99013 0.87947 1.48081 1.06052 1.70159 1.08580 1.18151 0.82014 0.77568 0.88362 1.90802 1.72767 1.50803 1.25564 1.19892 0.95605 0.97732 0.96570 1.21329 0.99645 0.96239 0.93072 1.21232 0.94656 0.99635 0.97308 1.21321 0.97036 0.94561 0.98924 1.21110 0.99294 0.98301 0.92966 1.21919 0.97312 0.97117 0.97010 1.96828 1.92711 1.44120 1.60499 1.22202 0.96700 0.99837 0.82876 1.22313 0.94610 0.94839 0.96219 0.92759 0.94620 0.95216 0.93822 0.90274 0.89304 0.91116 0.84492 0.84709 0.84753 0.84483 0.90858 0.90321 0.93719 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.03 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.55 -14.85 7.76 -34.44 -0.27 -15.12 16 8 H 0.06 1.53 5.88 -52.48 -0.31 1.22 16 9 C 0.19 4.65 5.11 -4.98 -0.03 4.63 16 10 N -0.54 -10.94 4.83 -235.47 -1.14 -12.08 16 11 C 0.05 0.96 5.25 -3.70 -0.02 0.94 16 12 C 0.12 1.87 6.61 -3.61 -0.02 1.85 16 13 N -0.60 -9.35 3.00 -173.32 -0.52 -9.87 16 14 C 0.55 8.95 6.52 -12.35 -0.08 8.86 16 15 O -0.52 -9.89 15.32 5.31 0.08 -9.81 16 16 C -0.09 -1.25 4.61 -104.95 -0.48 -1.73 16 17 C -0.08 -0.85 7.84 -39.19 -0.31 -1.16 16 18 C -0.11 -0.87 10.03 -39.64 -0.40 -1.26 16 19 C -0.10 -0.78 10.04 -39.50 -0.40 -1.17 16 20 C -0.10 -0.96 9.78 -39.61 -0.39 -1.35 16 21 C -0.05 -0.69 6.25 -39.10 -0.24 -0.94 16 22 Br -0.03 -0.41 31.79 -68.01 -2.16 -2.57 16 23 C 0.11 1.52 5.71 -3.36 -0.02 1.50 16 24 C 0.05 0.90 5.17 -3.46 -0.02 0.88 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 27 H 0.03 0.78 8.14 -51.92 -0.42 0.36 16 28 H 0.04 0.95 7.11 -51.93 -0.37 0.58 16 29 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 30 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.14 1.20 7.74 -52.48 -0.41 0.79 16 33 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 35 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.99 5.54 -51.93 -0.29 0.71 16 38 H 0.04 0.93 6.62 -51.93 -0.34 0.59 16 39 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 LS Contribution 336.28 15.07 5.07 5.07 Total: -1.00 -31.31 336.28 -10.73 -42.04 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.01 Total: -1.89 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.77 Total: -2.30 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: -0.92 Total: -46.98 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -2.16 Total: -2.57 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.31 -10.73 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072434090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.367 kcal (2) G-P(sol) polarization free energy of solvation -31.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds