Wall clock time and date at job start Tue Mar 31 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57576 * 2 1 4 4 O 1.42102 * 108.57871 * 131.02310 * 2 1 3 5 5 C 1.81397 * 101.92051 * 245.51367 * 2 1 3 6 6 C 1.50700 * 109.46970 * 179.97438 * 5 2 1 7 7 N 1.29024 * 124.91613 * 89.99872 * 6 5 2 8 8 C 1.31784 * 117.12656 * 179.97438 * 7 6 5 9 9 C 1.50704 * 122.75279 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47119 * 274.97856 * 9 8 7 11 11 C 1.36846 * 119.99934 * 89.99903 * 10 9 8 12 12 H 1.08001 * 120.00265 * 217.52261 * 11 10 9 13 13 C 1.38794 * 119.99931 * 37.51979 * 11 10 9 14 14 N 1.31588 * 120.00302 * 20.74222 * 13 11 10 15 15 Si 1.86805 * 119.99804 * 200.73518 * 13 11 10 16 16 H 1.48496 * 109.47470 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46685 * 120.00417 * 15 13 11 18 18 H 1.48500 * 109.47075 * 240.00133 * 15 13 11 19 19 C 1.39296 * 120.00038 * 269.99976 * 10 9 8 20 20 C 1.39079 * 120.08643 * 5.07189 * 19 10 9 21 21 C 1.38049 * 119.90566 * 179.78959 * 20 19 10 22 22 C 1.38333 * 120.09081 * 0.47074 * 21 20 19 23 23 C 1.38328 * 120.17743 * 359.78687 * 22 21 20 24 24 C 1.38042 * 120.09071 * 359.97438 * 23 22 21 25 25 C 1.33640 * 114.49710 * 0.02562 * 8 7 6 26 26 S 1.70981 * 124.91767 * 269.69564 * 6 5 2 27 27 H 1.08999 * 109.47340 * 54.48623 * 1 2 3 28 28 H 1.08996 * 109.47187 * 174.48996 * 1 2 3 29 29 H 1.09003 * 109.46991 * 294.48466 * 1 2 3 30 30 H 1.08994 * 109.47164 * 299.99848 * 5 2 1 31 31 H 1.09003 * 109.47321 * 60.00047 * 5 2 1 32 32 H 1.09004 * 109.46841 * 34.97819 * 9 8 7 33 33 H 1.08994 * 109.46777 * 154.97662 * 9 8 7 34 34 H 0.96999 * 120.00277 * 174.86872 * 14 13 11 35 35 H 1.07996 * 120.04918 * 0.02804 * 20 19 10 36 36 H 1.08003 * 119.95866 * 180.24951 * 21 20 19 37 37 H 1.07999 * 119.91284 * 179.76074 * 22 21 20 38 38 H 1.08002 * 119.95275 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.04430 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.03571 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1887 -0.7356 -1.6152 6 6 3.6826 -0.8171 -1.7957 7 7 4.4152 -1.8198 -1.4455 8 6 5.7094 -1.7281 -1.6763 9 6 6.6809 -2.8235 -1.3194 10 7 7.0868 -2.6791 0.0808 11 6 6.3738 -3.3037 1.0678 12 1 6.2191 -2.8112 2.0165 13 6 5.8492 -4.5700 0.8496 14 7 6.3493 -5.3353 -0.0968 15 14 4.4333 -5.1881 1.8999 16 1 4.0561 -4.1441 2.8862 17 1 3.2680 -5.4914 1.0306 18 1 4.8499 -6.4199 2.6170 19 6 8.1986 -1.9060 0.4075 20 6 8.8616 -1.1857 -0.5804 21 6 9.9604 -0.4174 -0.2517 22 6 10.4080 -0.3710 1.0564 23 6 9.7545 -1.0902 2.0409 24 6 8.6521 -1.8570 1.7213 25 6 6.0897 -0.5840 -2.2529 26 16 4.6512 0.4027 -2.5008 27 1 -0.3634 0.5970 -0.8365 28 1 -0.3633 -1.0229 -0.0987 29 1 -0.3633 0.4259 0.9353 30 1 1.7610 -1.7369 -1.6665 31 1 1.7610 -0.1170 -2.4043 32 1 6.2034 -3.7931 -1.4611 33 1 7.5590 -2.7537 -1.9613 34 1 6.0339 -6.2467 -0.2009 35 1 8.5150 -1.2244 -1.6025 36 1 10.4734 0.1455 -1.0174 37 1 11.2702 0.2280 1.3097 38 1 10.1074 -1.0517 3.0609 39 1 8.1427 -2.4186 2.4905 40 1 7.0999 -0.3138 -2.5231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072584513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:19 Heat of formation + Delta-G solvation = 31.592347 kcal Electronic energy + Delta-G solvation = -26772.556568 eV Core-core repulsion = 23000.744574 eV Total energy + Delta-G solvation = -3771.811994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.72778 -38.26686 -37.01043 -36.02710 -35.54230 -32.79095 -31.81168 -30.13635 -29.81572 -28.79277 -28.13844 -26.42906 -24.16475 -22.76428 -21.29529 -20.33354 -19.42984 -18.98979 -17.71080 -17.17615 -16.88880 -16.37525 -16.15894 -15.99343 -15.05476 -14.87708 -14.67319 -14.05760 -13.92362 -13.69658 -13.58959 -13.42720 -13.35981 -13.21405 -12.72024 -12.59181 -12.28506 -12.11253 -12.05655 -11.97890 -11.50873 -11.32824 -11.24106 -11.06961 -10.95817 -10.81130 -10.49288 -10.42098 -10.25391 -9.76775 -9.32612 -9.26748 -9.09399 -8.44249 -8.39564 -7.92528 -6.54059 -6.18080 -3.80566 -0.30733 1.00017 1.54773 1.93897 2.48682 2.56340 2.68114 3.13603 3.28430 3.32773 3.43955 3.47162 3.83125 4.03226 4.22557 4.44851 4.53676 4.79135 4.83576 4.98989 5.08637 5.16884 5.35021 5.41259 5.54311 5.81312 5.84623 5.90681 6.12583 6.29246 6.44860 6.51419 6.68890 6.84623 7.09403 7.12581 7.47560 7.53630 7.57358 7.65133 7.95928 8.13374 8.28977 8.73201 9.34936 9.71230 10.72352 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.004917 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.106265 B = 5693.650017 C = 7117.126714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.412 3.588 3 O -0.929 6.929 4 O -0.906 6.906 5 C -0.528 4.528 6 C 0.019 3.981 7 N -0.412 5.412 8 C 0.075 3.925 9 C 0.178 3.822 10 N -0.436 5.436 11 C -0.301 4.301 12 H 0.086 0.914 13 C 0.045 3.955 14 N -0.869 5.869 15 Si 0.914 3.086 16 H -0.263 1.263 17 H -0.278 1.278 18 H -0.285 1.285 19 C 0.221 3.779 20 C -0.239 4.239 21 C -0.071 4.071 22 C -0.235 4.235 23 C -0.073 4.073 24 C -0.199 4.199 25 C -0.238 4.238 26 S 0.110 5.890 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.158 0.842 31 H 0.146 0.854 32 H 0.129 0.871 33 H 0.070 0.930 34 H 0.268 0.732 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 9.290 -6.514 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.590 3.410 3 O -0.926 6.926 4 O -0.903 6.903 5 C -0.658 4.658 6 C -0.260 4.260 7 N -0.127 5.127 8 C -0.059 4.059 9 C 0.051 3.949 10 N -0.124 5.124 11 C -0.429 4.429 12 H 0.103 0.897 13 C -0.160 4.160 14 N -0.505 5.505 15 Si 0.741 3.259 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.211 1.211 19 C 0.107 3.893 20 C -0.263 4.263 21 C -0.090 4.090 22 C -0.257 4.257 23 C -0.093 4.093 24 C -0.222 4.222 25 C -0.378 4.378 26 S 0.363 5.637 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.176 0.824 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.990 9.741 -6.241 15.285 hybrid contribution -0.780 -1.262 -0.016 1.484 sum -10.770 8.479 -6.257 15.068 Atomic orbital electron populations 1.30329 1.26893 1.11718 1.11814 1.08475 0.78527 0.76278 0.77721 1.93611 1.78983 1.34050 1.85919 1.93706 1.78141 1.66339 1.52123 1.28985 0.96246 1.15951 1.24576 1.25372 0.97828 0.95475 1.07323 1.66062 1.05502 1.25649 1.15476 1.21365 0.90163 0.97473 0.96891 1.20205 0.93500 0.96954 0.84247 1.42219 1.21813 1.44081 1.04253 1.19299 1.28884 0.98364 0.96344 0.89659 1.25275 0.98153 0.95321 0.97218 1.69853 1.40391 1.07284 1.32983 0.86044 0.81417 0.78430 0.80035 1.18728 1.20417 1.21125 1.18202 0.85893 0.91882 0.93296 1.20423 1.01532 1.06600 0.97778 1.20537 0.95550 0.97252 0.95659 1.20409 1.03723 1.07782 0.93767 1.20682 0.95029 0.95828 0.97734 1.20587 1.00272 1.05599 0.95754 1.27185 1.02822 0.97489 1.10317 1.83694 1.00068 1.22497 1.57420 0.85337 0.85095 0.85005 0.82379 0.83603 0.85411 0.91140 0.92153 0.87830 0.88216 0.88498 0.88023 0.86310 0.80279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -4.28 10.62 101.05 1.07 -3.20 16 2 S 2.41 30.21 5.34 -107.50 -0.57 29.63 16 3 O -0.93 -14.07 18.10 -57.83 -1.05 -15.12 16 4 O -0.91 -16.62 18.10 -57.83 -1.05 -17.66 16 5 C -0.53 -5.91 6.39 36.01 0.23 -5.68 16 6 C 0.02 0.31 6.65 -13.46 -0.09 0.22 16 7 N -0.41 -8.60 10.53 -8.05 -0.08 -8.68 16 8 C 0.07 1.55 6.32 -84.22 -0.53 1.02 16 9 C 0.18 4.08 5.17 -5.19 -0.03 4.05 16 10 N -0.44 -10.96 2.62 -114.42 -0.30 -11.26 16 11 C -0.30 -8.14 8.35 -15.11 -0.13 -8.27 16 12 H 0.09 2.37 7.06 -52.49 -0.37 2.00 16 13 C 0.05 1.20 4.97 -17.45 -0.09 1.11 16 14 N -0.87 -23.38 11.41 55.49 0.63 -22.75 16 15 Si 0.91 21.57 29.60 -169.99 -5.03 16.54 16 16 H -0.26 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 C 0.22 5.23 6.50 -83.84 -0.55 4.69 16 20 C -0.24 -4.97 8.93 -39.34 -0.35 -5.32 16 21 C -0.07 -1.34 10.04 -39.62 -0.40 -1.74 16 22 C -0.24 -4.45 10.04 -39.51 -0.40 -4.85 16 23 C -0.07 -1.48 10.04 -39.62 -0.40 -1.87 16 24 C -0.20 -4.58 9.25 -39.34 -0.36 -4.94 16 25 C -0.24 -4.14 10.46 29.12 0.30 -3.84 16 26 S 0.11 1.65 23.18 -107.50 -2.49 -0.84 16 27 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 28 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 30 H 0.16 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.15 0.93 8.14 -51.92 -0.42 0.50 16 32 H 0.13 3.24 5.48 -51.93 -0.28 2.95 16 33 H 0.07 1.47 6.37 -51.93 -0.33 1.14 16 34 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 35 H 0.10 1.95 4.29 -52.49 -0.23 1.73 16 36 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.82 6.59 -52.48 -0.35 2.47 16 40 H 0.18 2.72 6.56 -52.49 -0.34 2.38 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -35.90 363.49 -10.59 -46.49 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.42 Total: 6.80 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: -1.71 Total: -28.62 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: 0.25 Total: -42.69 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -2.09 Total: -32.78 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 16 Polarization: 31.86 SS G_CDS: -3.07 Total: 28.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.90 -10.59 -46.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072584513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.079 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds