Wall clock time and date at job start Tue Mar 31 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57576 * 2 1 4 4 O 1.42102 * 108.57871 * 131.02310 * 2 1 3 5 5 C 1.81397 * 101.92051 * 245.51367 * 2 1 3 6 6 C 1.50700 * 109.46970 * 179.97438 * 5 2 1 7 7 N 1.29024 * 124.91613 * 89.99872 * 6 5 2 8 8 C 1.31784 * 117.12656 * 179.97438 * 7 6 5 9 9 C 1.50704 * 122.75279 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47119 * 274.97856 * 9 8 7 11 11 C 1.36846 * 119.99934 * 89.99903 * 10 9 8 12 12 H 1.08001 * 120.00265 * 217.52261 * 11 10 9 13 13 C 1.38794 * 119.99931 * 37.51979 * 11 10 9 14 14 N 1.31588 * 120.00302 * 20.74222 * 13 11 10 15 15 Si 1.86805 * 119.99804 * 200.73518 * 13 11 10 16 16 H 1.48496 * 109.47470 * 0.02562 * 15 13 11 17 17 H 1.48509 * 109.46685 * 120.00417 * 15 13 11 18 18 H 1.48500 * 109.47075 * 240.00133 * 15 13 11 19 19 C 1.39296 * 120.00038 * 269.99976 * 10 9 8 20 20 C 1.39079 * 120.08643 * 5.07189 * 19 10 9 21 21 C 1.38049 * 119.90566 * 179.78959 * 20 19 10 22 22 C 1.38333 * 120.09081 * 0.47074 * 21 20 19 23 23 C 1.38328 * 120.17743 * 359.78687 * 22 21 20 24 24 C 1.38042 * 120.09071 * 359.97438 * 23 22 21 25 25 C 1.33640 * 114.49710 * 0.02562 * 8 7 6 26 26 S 1.70981 * 124.91767 * 269.69564 * 6 5 2 27 27 H 1.08999 * 109.47340 * 54.48623 * 1 2 3 28 28 H 1.08996 * 109.47187 * 174.48996 * 1 2 3 29 29 H 1.09003 * 109.46991 * 294.48466 * 1 2 3 30 30 H 1.08994 * 109.47164 * 299.99848 * 5 2 1 31 31 H 1.09003 * 109.47321 * 60.00047 * 5 2 1 32 32 H 1.09004 * 109.46841 * 34.97819 * 9 8 7 33 33 H 1.08994 * 109.46777 * 154.97662 * 9 8 7 34 34 H 0.96999 * 120.00277 * 174.86872 * 14 13 11 35 35 H 1.07996 * 120.04918 * 0.02804 * 20 19 10 36 36 H 1.08003 * 119.95866 * 180.24951 * 21 20 19 37 37 H 1.07999 * 119.91284 * 179.76074 * 22 21 20 38 38 H 1.08002 * 119.95275 * 179.97438 * 23 22 21 39 39 H 1.08003 * 120.04430 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.03571 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0162 5 6 2.1887 -0.7356 -1.6152 6 6 3.6826 -0.8171 -1.7957 7 7 4.4152 -1.8198 -1.4455 8 6 5.7094 -1.7281 -1.6763 9 6 6.6809 -2.8235 -1.3194 10 7 7.0868 -2.6791 0.0808 11 6 6.3738 -3.3037 1.0678 12 1 6.2191 -2.8112 2.0165 13 6 5.8492 -4.5700 0.8496 14 7 6.3493 -5.3353 -0.0968 15 14 4.4333 -5.1881 1.8999 16 1 4.0561 -4.1441 2.8862 17 1 3.2680 -5.4914 1.0306 18 1 4.8499 -6.4199 2.6170 19 6 8.1986 -1.9060 0.4075 20 6 8.8616 -1.1857 -0.5804 21 6 9.9604 -0.4174 -0.2517 22 6 10.4080 -0.3710 1.0564 23 6 9.7545 -1.0902 2.0409 24 6 8.6521 -1.8570 1.7213 25 6 6.0897 -0.5840 -2.2529 26 16 4.6512 0.4027 -2.5008 27 1 -0.3634 0.5970 -0.8365 28 1 -0.3633 -1.0229 -0.0987 29 1 -0.3633 0.4259 0.9353 30 1 1.7610 -1.7369 -1.6665 31 1 1.7610 -0.1170 -2.4043 32 1 6.2034 -3.7931 -1.4611 33 1 7.5590 -2.7537 -1.9613 34 1 6.0339 -6.2467 -0.2009 35 1 8.5150 -1.2244 -1.6025 36 1 10.4734 0.1455 -1.0174 37 1 11.2702 0.2280 1.3097 38 1 10.1074 -1.0517 3.0609 39 1 8.1427 -2.4186 2.4905 40 1 7.0999 -0.3138 -2.5231 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072584513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:19 Heat of formation + Delta-G solvation = 5.302281 kcal Electronic energy + Delta-G solvation = -26773.696590 eV Core-core repulsion = 23000.744574 eV Total energy + Delta-G solvation = -3772.952017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 352.070 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17111 -39.89161 -38.08117 -37.26356 -37.09209 -34.22362 -33.51474 -31.62988 -30.69506 -30.16315 -29.60338 -28.10831 -25.90080 -24.17316 -22.91883 -21.97673 -20.83878 -19.98798 -19.21381 -18.92207 -17.95318 -17.84096 -17.27329 -16.99063 -16.79129 -16.35282 -16.23064 -15.79798 -15.26269 -15.05461 -14.95677 -14.63575 -14.42484 -14.03689 -14.00661 -13.94989 -13.71586 -13.53309 -13.38732 -13.15720 -13.08097 -12.94087 -12.85967 -12.69548 -12.30431 -12.21926 -12.15688 -11.95984 -11.80421 -11.44298 -11.11498 -10.67005 -10.39716 -10.25307 -9.74069 -9.55305 -8.46838 -8.04832 -5.82230 -1.22065 -0.26650 0.31101 0.60044 0.84229 1.02755 1.33431 1.38278 1.50267 1.67507 1.77641 2.30357 2.49809 2.93178 2.97980 3.04425 3.32523 3.36527 3.68701 3.94382 4.06609 4.14323 4.24327 4.30078 4.35563 4.39242 4.48196 4.57674 4.68301 4.90086 4.91701 5.02533 5.04452 5.16625 5.30125 5.46386 5.49562 5.84923 5.89287 6.00876 6.17746 6.49409 6.79551 6.82954 7.46942 7.79881 8.73524 Molecular weight = 352.07amu Principal moments of inertia in cm(-1) A = 0.009266 B = 0.004917 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.106265 B = 5693.650017 C = 7117.126714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.616 4.616 2 S 2.388 3.612 3 O -0.970 6.970 4 O -0.986 6.986 5 C -0.529 4.529 6 C 0.005 3.995 7 N -0.466 5.466 8 C 0.046 3.954 9 C 0.186 3.814 10 N -0.459 5.459 11 C -0.310 4.310 12 H 0.058 0.942 13 C 0.011 3.989 14 N -0.891 5.891 15 Si 0.959 3.041 16 H -0.279 1.279 17 H -0.273 1.273 18 H -0.271 1.271 19 C 0.192 3.808 20 C -0.241 4.241 21 C -0.068 4.068 22 C -0.224 4.224 23 C -0.075 4.075 24 C -0.233 4.233 25 C -0.245 4.245 26 S 0.180 5.820 27 H 0.173 0.827 28 H 0.157 0.843 29 H 0.144 0.856 30 H 0.178 0.822 31 H 0.201 0.799 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.270 0.730 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.093 0.907 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 11.899 -8.383 18.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.771 4.771 2 S 2.574 3.426 3 O -0.967 6.967 4 O -0.983 6.983 5 C -0.659 4.659 6 C -0.273 4.273 7 N -0.182 5.182 8 C -0.087 4.087 9 C 0.059 3.941 10 N -0.149 5.149 11 C -0.439 4.439 12 H 0.076 0.924 13 C -0.191 4.191 14 N -0.529 5.529 15 Si 0.784 3.216 16 H -0.204 1.204 17 H -0.198 1.198 18 H -0.196 1.196 19 C 0.082 3.918 20 C -0.265 4.265 21 C -0.086 4.086 22 C -0.245 4.245 23 C -0.094 4.094 24 C -0.257 4.257 25 C -0.385 4.385 26 S 0.434 5.566 27 H 0.191 0.809 28 H 0.175 0.825 29 H 0.162 0.838 30 H 0.196 0.804 31 H 0.219 0.781 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.111 0.889 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -10.963 12.377 -8.102 18.412 hybrid contribution -0.447 -1.827 0.512 1.950 sum -11.409 10.550 -7.590 17.294 Atomic orbital electron populations 1.29999 1.17922 1.14653 1.14530 1.08622 0.81992 0.74703 0.77312 1.93553 1.81713 1.35027 1.86359 1.93627 1.81643 1.67660 1.55377 1.29201 0.93190 1.18265 1.25238 1.26253 1.00243 0.95006 1.05804 1.66016 1.06056 1.28419 1.17741 1.21053 0.90371 0.98152 0.99159 1.19940 0.94134 0.96614 0.83411 1.42232 1.22846 1.45384 1.04464 1.19118 1.29794 0.98636 0.96368 0.92415 1.25757 0.99643 0.95322 0.98382 1.69924 1.41514 1.07426 1.34069 0.85385 0.79581 0.77869 0.78719 1.20406 1.19806 1.19641 1.18644 0.86459 0.92377 0.94362 1.20710 1.01816 1.06045 0.97921 1.21042 0.94460 0.96259 0.96864 1.20913 1.03886 1.06409 0.93339 1.21007 0.93823 0.94896 0.99670 1.20659 1.02094 1.07484 0.95444 1.27372 1.04916 0.97095 1.09130 1.83316 0.97497 1.20232 1.55544 0.80942 0.82482 0.83769 0.80430 0.78128 0.88631 0.90265 0.92077 0.86302 0.84012 0.84728 0.85525 0.88897 0.78470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -5.21 10.62 113.37 1.20 -4.00 16 2 S 2.39 57.81 5.34 -56.49 -0.30 57.51 16 3 O -0.97 -28.98 18.10 -127.37 -2.30 -31.28 16 4 O -0.99 -38.20 18.10 -127.37 -2.31 -40.51 16 5 C -0.53 -10.69 6.39 71.24 0.45 -10.23 16 6 C 0.00 0.16 6.65 88.52 0.59 0.75 16 7 N -0.47 -20.17 10.53 -179.39 -1.89 -22.06 16 8 C 0.05 1.98 6.32 41.52 0.26 2.24 16 9 C 0.19 9.02 5.17 85.63 0.44 9.46 16 10 N -0.46 -24.56 2.62 -515.90 -1.35 -25.91 16 11 C -0.31 -18.18 8.35 84.04 0.70 -17.47 16 12 H 0.06 3.57 7.06 -2.91 -0.02 3.55 16 13 C 0.01 0.62 4.97 84.86 0.42 1.04 16 14 N -0.89 -50.85 11.41 21.65 0.25 -50.61 16 15 Si 0.96 46.87 29.60 68.60 2.03 48.91 16 16 H -0.28 -14.17 7.11 99.48 0.71 -13.47 16 17 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 18 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 19 C 0.19 9.50 6.50 38.36 0.25 9.75 16 20 C -0.24 -9.87 8.93 22.43 0.20 -9.67 16 21 C -0.07 -2.34 10.04 22.25 0.22 -2.12 16 22 C -0.22 -7.78 10.04 22.31 0.22 -7.56 16 23 C -0.08 -2.97 10.04 22.24 0.22 -2.74 16 24 C -0.23 -11.25 9.25 22.42 0.21 -11.05 16 25 C -0.24 -8.46 10.46 66.78 0.70 -7.76 16 26 S 0.18 5.11 23.18 -56.49 -1.31 3.80 16 27 H 0.17 0.08 8.14 -2.39 -0.02 0.06 16 28 H 0.16 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.18 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.20 1.60 8.14 -2.39 -0.02 1.59 16 32 H 0.10 5.22 5.48 -2.39 -0.01 5.20 16 33 H 0.08 3.48 6.37 -2.39 -0.02 3.46 16 34 H 0.27 14.49 8.32 -92.71 -0.77 13.71 16 35 H 0.12 4.39 4.29 -2.91 -0.01 4.38 16 36 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.68 16 38 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.09 4.84 6.59 -2.91 -0.02 4.82 16 40 H 0.20 5.76 6.56 -2.91 -0.02 5.74 16 Total: -1.00 -88.16 363.49 0.00 -88.16 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 1.08 Total: 21.36 kcal Atomic # 6 Polarization: -55.47 SS G_CDS: 6.10 Total: -49.37 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -2.99 Total: -98.58 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -4.61 Total: -71.79 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.91 kcal Atomic # 16 Polarization: 62.93 SS G_CDS: -1.61 Total: 61.32 kcal Total: -88.16 0.00 -88.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072584513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.459 kcal (2) G-P(sol) polarization free energy of solvation -88.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds