Wall clock time and date at job start Tue Mar 31 2020 06:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00412 * 2 1 4 4 C 1.38726 * 120.05809 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94335 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05857 * 0.02673 * 5 4 3 7 7 C 1.50696 * 119.94758 * 179.97438 * 6 5 4 8 8 C 1.53044 * 109.46055 * 239.99707 * 7 6 5 9 9 C 1.53191 * 109.31440 * 178.62547 * 8 7 6 10 10 N 1.46926 * 108.89109 * 54.56430 * 9 8 7 11 11 S 1.65602 * 120.63116 * 126.46643 * 10 9 8 12 12 O 1.42094 * 104.28022 * 206.07250 * 11 10 9 13 13 O 1.42101 * 104.27558 * 333.92968 * 11 10 9 14 14 C 1.81399 * 104.44897 * 89.99836 * 11 10 9 15 15 C 1.53000 * 109.47282 * 180.02562 * 14 11 10 16 16 C 1.50697 * 109.47256 * 180.02562 * 15 14 11 17 17 H 1.07993 * 120.00161 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99742 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99737 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00083 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47114 * 90.00015 * 20 18 16 22 22 H 1.48505 * 109.46764 * 209.99827 * 20 18 16 23 23 H 1.48493 * 109.47158 * 329.99969 * 20 18 16 24 24 C 1.46957 * 118.71783 * 306.64359 * 10 9 8 25 25 C 1.53040 * 109.44920 * 119.93699 * 7 6 5 26 26 C 1.38272 * 120.10690 * 0.24699 * 6 5 4 27 27 C 1.38146 * 120.05683 * 359.45395 * 26 6 5 28 28 H 1.08999 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47232 * 300.00479 * 1 2 3 30 30 H 1.09002 * 109.46682 * 60.00141 * 1 2 3 31 31 H 1.07999 * 120.03120 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97361 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.46215 * 359.97108 * 7 6 5 34 34 H 1.09003 * 109.49852 * 58.67812 * 8 7 6 35 35 H 1.08997 * 109.49691 * 298.58245 * 8 7 6 36 36 H 1.09002 * 109.58786 * 174.42474 * 9 8 7 37 37 H 1.08996 * 109.58870 * 294.70753 * 9 8 7 38 38 H 1.08996 * 109.47438 * 300.00379 * 14 11 10 39 39 H 1.08998 * 109.46957 * 60.00644 * 14 11 10 40 40 H 1.09004 * 109.47140 * 300.00847 * 15 14 11 41 41 H 1.09009 * 109.46881 * 59.99999 * 15 14 11 42 42 H 0.97004 * 119.99399 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46843 * 293.57352 * 24 10 9 44 44 H 1.08997 * 109.71602 * 173.28846 * 24 10 9 45 45 H 1.08995 * 109.49643 * 301.32932 * 25 7 6 46 46 H 1.08996 * 109.49892 * 61.43126 * 25 7 6 47 47 H 1.08006 * 119.96914 * 179.70466 * 26 6 5 48 48 H 1.07998 * 120.02623 * 180.24705 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 3.5743 5.7994 1.2528 9 6 4.2981 7.1495 1.2681 10 7 4.0283 7.8482 0.0041 11 16 3.4254 9.3906 0.0046 12 8 2.7367 9.4981 -1.2337 13 8 2.7315 9.4952 1.2402 14 6 4.8967 10.4517 0.0090 15 6 4.4666 11.9200 0.0104 16 6 5.6888 12.8014 0.0135 17 1 6.6739 12.3588 0.0139 18 6 5.5495 14.1732 0.0158 19 7 6.6162 14.9425 0.0179 20 14 3.8456 14.9389 0.0158 21 1 3.3930 15.1394 1.4158 22 1 3.8918 16.2490 -0.6820 23 1 2.8977 14.0371 -0.6866 24 6 4.3000 7.1504 -1.2604 25 6 3.5763 5.8003 -1.2473 26 6 1.9211 3.6047 0.0068 27 6 1.2915 2.3750 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0209 0.3799 0.0014 32 1 5.1345 2.5749 0.0019 33 1 5.0667 4.8754 0.0036 34 1 3.8456 5.2312 2.1426 35 1 2.4970 5.9642 1.2403 36 1 3.9345 7.7496 2.1022 37 1 5.3707 6.9879 1.3745 38 1 5.4900 10.2464 0.9000 39 1 5.4937 10.2485 -0.8799 40 1 3.8729 12.1255 -0.8803 41 1 3.8696 12.1228 0.8997 42 1 6.5181 15.9075 0.0199 43 1 5.3731 6.9888 -1.3628 44 1 3.9396 7.7502 -2.0961 45 1 3.8489 5.2327 -2.1370 46 1 2.4989 5.9652 -1.2363 47 1 1.3343 4.5114 0.0121 48 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074969971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:52 Heat of formation + Delta-G solvation = -95.533916 kcal Electronic energy + Delta-G solvation = -28926.975749 eV Core-core repulsion = 24880.845803 eV Total energy + Delta-G solvation = -4046.129946 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.60150 -39.11347 -37.33649 -36.79398 -35.56327 -33.94590 -33.38229 -31.48009 -31.37560 -31.19223 -29.57946 -27.59254 -25.96639 -24.58032 -23.47955 -23.13142 -21.70044 -21.17897 -20.19214 -18.52623 -18.51187 -17.73449 -16.97510 -16.56751 -16.10860 -15.97508 -15.67722 -15.55692 -14.80827 -14.71995 -14.49064 -14.36435 -14.17559 -14.07693 -13.88908 -13.59672 -13.20379 -13.01299 -13.00512 -12.78056 -12.52085 -12.32060 -11.90785 -11.74415 -11.69259 -11.67880 -11.51192 -11.35065 -11.28524 -11.24505 -11.19329 -10.99685 -10.67860 -10.48263 -10.42628 -10.14694 -9.73221 -9.42787 -9.30017 -8.85439 -8.66902 -8.36888 -6.17228 -4.18427 0.63268 1.04277 1.11659 2.90480 2.91214 3.25852 3.33231 3.37397 3.44134 4.17901 4.35164 4.37404 4.39587 4.45455 4.53957 4.59864 4.73523 4.73956 4.81940 4.91445 5.02685 5.03816 5.07164 5.11259 5.14558 5.23904 5.25390 5.34174 5.51301 5.52040 5.53533 5.58086 5.64719 5.68816 5.74547 5.82801 5.93472 5.97548 6.08341 6.10690 6.15868 6.28456 6.43636 6.45507 6.62906 6.81390 6.93690 7.04293 7.54298 8.36068 8.83989 9.42485 10.95131 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.032140 B = 0.001961 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.987504 B =14275.089815 C =14622.814551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.119 3.881 4 C -0.151 4.151 5 C -0.077 4.077 6 C -0.109 4.109 7 C -0.043 4.043 8 C -0.122 4.122 9 C 0.117 3.883 10 N -1.005 6.005 11 S 2.588 3.412 12 O -0.964 6.964 13 O -0.964 6.964 14 C -0.582 4.582 15 C -0.007 4.007 16 C -0.519 4.519 17 H 0.078 0.922 18 C 0.072 3.928 19 N -0.895 5.895 20 Si 0.869 3.131 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.262 1.262 24 C 0.117 3.883 25 C -0.122 4.122 26 C -0.073 4.073 27 C -0.205 4.205 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.032 0.968 41 H 0.027 0.973 42 H 0.266 0.734 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.786 -29.633 -0.049 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.169 4.169 5 C -0.095 4.095 6 C -0.109 4.109 7 C -0.061 4.061 8 C -0.161 4.161 9 C -0.008 4.008 10 N -0.842 5.842 11 S 2.687 3.313 12 O -0.954 6.954 13 O -0.955 6.955 14 C -0.715 4.715 15 C -0.047 4.047 16 C -0.558 4.558 17 H 0.096 0.904 18 C -0.131 4.131 19 N -0.533 5.533 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.186 1.186 24 C -0.008 4.008 25 C -0.161 4.161 26 C -0.091 4.091 27 C -0.224 4.224 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.088 0.912 47 H 0.143 0.857 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.585 -29.436 -0.052 30.663 hybrid contribution -0.362 0.647 0.021 0.741 sum -8.947 -28.790 -0.032 30.148 Atomic orbital electron populations 1.23048 0.78387 1.03889 1.01434 1.86056 1.21396 1.27113 1.88865 1.19044 0.92415 0.84084 0.97074 1.20404 0.91326 0.98647 1.06568 1.20892 0.99789 0.90889 0.97904 1.19811 0.93522 0.94908 1.02666 1.20087 0.99740 0.90751 0.95536 1.21935 1.01298 0.95395 0.97482 1.21421 0.99999 0.93759 0.85616 1.57883 1.83315 1.31613 1.11372 1.05702 0.77755 0.73758 0.74111 1.93531 1.71293 1.85412 1.45212 1.93531 1.71074 1.85439 1.45430 1.30342 1.18429 1.11932 1.10832 1.19411 0.99299 0.88165 0.97780 1.20852 0.92323 0.90417 1.52252 0.90422 1.24991 0.96839 0.97150 0.94141 1.69887 1.28711 1.04728 1.50001 0.86925 0.85111 0.79283 0.79132 1.19666 1.20738 1.18639 1.21428 0.99979 0.93764 0.85624 1.21932 1.01305 0.95385 0.97481 1.20853 0.94211 0.97014 0.97017 1.21234 1.00004 0.92357 1.08796 0.88285 0.92627 0.92634 0.85354 0.85311 0.90054 0.90684 0.91238 0.88621 0.91369 0.85724 0.85700 0.95003 0.95445 0.92385 0.91384 0.88597 0.90680 0.91241 0.85704 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.85 10.50 -19.44 -0.20 -3.05 16 3 C 0.12 1.10 6.69 -39.22 -0.26 0.84 16 4 C -0.15 -1.31 9.99 -39.44 -0.39 -1.70 16 5 C -0.08 -0.62 9.66 -39.61 -0.38 -1.00 16 6 C -0.11 -0.94 4.78 -104.60 -0.50 -1.44 16 7 C -0.04 -0.36 2.32 -91.73 -0.21 -0.57 16 8 C -0.12 -1.12 5.15 -26.61 -0.14 -1.26 16 9 C 0.12 1.23 6.43 -3.71 -0.02 1.21 16 10 N -1.00 -12.50 3.23 -113.50 -0.37 -12.87 16 11 S 2.59 43.36 5.45 -107.50 -0.59 42.78 16 12 O -0.96 -18.50 16.59 -57.54 -0.95 -19.45 16 13 O -0.96 -18.44 16.59 -57.54 -0.95 -19.40 16 14 C -0.58 -10.56 6.12 37.16 0.23 -10.33 16 15 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 16 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 17 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 20 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 24 C 0.12 1.23 6.42 -3.69 -0.02 1.21 16 25 C -0.12 -1.12 5.16 -26.61 -0.14 -1.26 16 26 C -0.07 -0.66 8.73 -39.60 -0.35 -1.00 16 27 C -0.21 -1.78 9.04 -39.43 -0.36 -2.14 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.13 0.79 7.94 -52.49 -0.42 0.37 16 33 H 0.08 0.60 7.87 -51.93 -0.41 0.19 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.71 7.42 -51.93 -0.39 0.32 16 36 H 0.10 1.08 6.86 -51.93 -0.36 0.73 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.12 2.06 8.14 -51.93 -0.42 1.63 16 39 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 40 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 41 H 0.03 0.64 7.57 -51.92 -0.39 0.25 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.10 1.09 6.87 -51.93 -0.36 0.73 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 0.71 7.45 -51.93 -0.39 0.32 16 47 H 0.13 1.07 7.13 -52.48 -0.37 0.70 16 48 H 0.13 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 393.30 15.07 5.93 5.93 Total: -1.00 -35.13 393.30 -10.68 -45.81 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.55 Total: -0.84 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: -2.10 Total: -29.47 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.41 Total: -39.11 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -2.11 Total: -41.91 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 43.36 SS G_CDS: -0.59 Total: 42.78 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.13 -10.68 -45.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074969971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.725 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds