Wall clock time and date at job start Tue Mar 31 2020 06:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35903 * 117.00412 * 2 1 4 4 C 1.38726 * 120.05809 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94335 * 180.02562 * 4 3 2 6 6 C 1.38261 * 120.05857 * 0.02673 * 5 4 3 7 7 C 1.50696 * 119.94758 * 179.97438 * 6 5 4 8 8 C 1.53044 * 109.46055 * 239.99707 * 7 6 5 9 9 C 1.53191 * 109.31440 * 178.62547 * 8 7 6 10 10 N 1.46926 * 108.89109 * 54.56430 * 9 8 7 11 11 S 1.65602 * 120.63116 * 126.46643 * 10 9 8 12 12 O 1.42094 * 104.28022 * 206.07250 * 11 10 9 13 13 O 1.42101 * 104.27558 * 333.92968 * 11 10 9 14 14 C 1.81399 * 104.44897 * 89.99836 * 11 10 9 15 15 C 1.53000 * 109.47282 * 180.02562 * 14 11 10 16 16 C 1.50697 * 109.47256 * 180.02562 * 15 14 11 17 17 H 1.07993 * 120.00161 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99742 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99737 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00083 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47114 * 90.00015 * 20 18 16 22 22 H 1.48505 * 109.46764 * 209.99827 * 20 18 16 23 23 H 1.48493 * 109.47158 * 329.99969 * 20 18 16 24 24 C 1.46957 * 118.71783 * 306.64359 * 10 9 8 25 25 C 1.53040 * 109.44920 * 119.93699 * 7 6 5 26 26 C 1.38272 * 120.10690 * 0.24699 * 6 5 4 27 27 C 1.38146 * 120.05683 * 359.45395 * 26 6 5 28 28 H 1.08999 * 109.46995 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47232 * 300.00479 * 1 2 3 30 30 H 1.09002 * 109.46682 * 60.00141 * 1 2 3 31 31 H 1.07999 * 120.03120 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.97361 * 179.97438 * 5 4 3 33 33 H 1.08994 * 109.46215 * 359.97108 * 7 6 5 34 34 H 1.09003 * 109.49852 * 58.67812 * 8 7 6 35 35 H 1.08997 * 109.49691 * 298.58245 * 8 7 6 36 36 H 1.09002 * 109.58786 * 174.42474 * 9 8 7 37 37 H 1.08996 * 109.58870 * 294.70753 * 9 8 7 38 38 H 1.08996 * 109.47438 * 300.00379 * 14 11 10 39 39 H 1.08998 * 109.46957 * 60.00644 * 14 11 10 40 40 H 1.09004 * 109.47140 * 300.00847 * 15 14 11 41 41 H 1.09009 * 109.46881 * 59.99999 * 15 14 11 42 42 H 0.97004 * 119.99399 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.46843 * 293.57352 * 24 10 9 44 44 H 1.08997 * 109.71602 * 173.28846 * 24 10 9 45 45 H 1.08995 * 109.49643 * 301.32932 * 25 7 6 46 46 H 1.08996 * 109.49892 * 61.43126 * 25 7 6 47 47 H 1.08006 * 119.96914 * 179.70466 * 26 6 5 48 48 H 1.07998 * 120.02623 * 180.24705 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0184 0.0028 8 6 3.5743 5.7994 1.2528 9 6 4.2981 7.1495 1.2681 10 7 4.0283 7.8482 0.0041 11 16 3.4254 9.3906 0.0046 12 8 2.7367 9.4981 -1.2337 13 8 2.7315 9.4952 1.2402 14 6 4.8967 10.4517 0.0090 15 6 4.4666 11.9200 0.0104 16 6 5.6888 12.8014 0.0135 17 1 6.6739 12.3588 0.0139 18 6 5.5495 14.1732 0.0158 19 7 6.6162 14.9425 0.0179 20 14 3.8456 14.9389 0.0158 21 1 3.3930 15.1394 1.4158 22 1 3.8918 16.2490 -0.6820 23 1 2.8977 14.0371 -0.6866 24 6 4.3000 7.1504 -1.2604 25 6 3.5763 5.8003 -1.2473 26 6 1.9211 3.6047 0.0068 27 6 1.2915 2.3750 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 4.0209 0.3799 0.0014 32 1 5.1345 2.5749 0.0019 33 1 5.0667 4.8754 0.0036 34 1 3.8456 5.2312 2.1426 35 1 2.4970 5.9642 1.2403 36 1 3.9345 7.7496 2.1022 37 1 5.3707 6.9879 1.3745 38 1 5.4900 10.2464 0.9000 39 1 5.4937 10.2485 -0.8799 40 1 3.8729 12.1255 -0.8803 41 1 3.8696 12.1228 0.8997 42 1 6.5181 15.9075 0.0199 43 1 5.3731 6.9888 -1.3628 44 1 3.9396 7.7502 -2.0961 45 1 3.8489 5.2327 -2.1370 46 1 2.4989 5.9652 -1.2363 47 1 1.3343 4.5114 0.0121 48 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074969971.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:51 Heat of formation + Delta-G solvation = -118.450865 kcal Electronic energy + Delta-G solvation = -28927.969502 eV Core-core repulsion = 24880.845803 eV Total energy + Delta-G solvation = -4047.123700 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 353.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21109 -39.81336 -38.22532 -38.03612 -37.00110 -35.88677 -34.16571 -33.46298 -31.98128 -31.97426 -30.23834 -28.12068 -27.83830 -25.35504 -24.26545 -23.77773 -23.10122 -22.30561 -21.00842 -19.77755 -19.22885 -19.09601 -18.56587 -17.22106 -17.20108 -16.99182 -16.63136 -16.46486 -16.29083 -15.82667 -15.40322 -15.27060 -15.16338 -14.89087 -14.82759 -14.80961 -14.48506 -14.02241 -13.79177 -13.73217 -13.71979 -13.33014 -13.20613 -13.06699 -12.94853 -12.87896 -12.80120 -12.73048 -12.23701 -12.10745 -12.05752 -11.99442 -11.94074 -11.71974 -11.67984 -11.38603 -11.31918 -11.09619 -10.84717 -9.91623 -9.87529 -8.99765 -8.36912 -6.42507 -0.71592 0.42891 0.47730 1.31310 1.33182 1.43286 1.73422 2.29043 2.40838 2.81264 2.83700 2.96935 3.18415 3.61270 3.73826 3.87415 3.96576 4.01597 4.01689 4.12623 4.18393 4.27959 4.34164 4.36802 4.45938 4.48211 4.50317 4.57037 4.61437 4.70126 4.72595 4.85664 4.88274 4.89709 4.91402 5.03291 5.09947 5.11667 5.13882 5.22441 5.30274 5.37968 5.43312 5.46370 5.47510 5.73879 5.80093 5.87357 6.16697 6.46645 6.63479 7.21866 8.78546 Molecular weight = 353.15amu Principal moments of inertia in cm(-1) A = 0.032140 B = 0.001961 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.987504 B =14275.089815 C =14622.814551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.105 3.895 4 C -0.162 4.162 5 C -0.075 4.075 6 C -0.114 4.114 7 C -0.036 4.036 8 C -0.120 4.120 9 C 0.109 3.891 10 N -0.996 5.996 11 S 2.614 3.386 12 O -0.989 6.989 13 O -0.989 6.989 14 C -0.588 4.588 15 C -0.017 4.017 16 C -0.527 4.527 17 H 0.050 0.950 18 C 0.014 3.986 19 N -0.939 5.939 20 Si 0.924 3.076 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.251 1.251 24 C 0.109 3.891 25 C -0.120 4.120 26 C -0.085 4.085 27 C -0.213 4.213 28 H 0.118 0.882 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.030 0.970 41 H 0.029 0.971 42 H 0.270 0.730 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.054 0.946 47 H 0.123 0.877 48 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 -31.581 -0.021 32.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.060 3.940 4 C -0.181 4.181 5 C -0.092 4.092 6 C -0.114 4.114 7 C -0.055 4.055 8 C -0.159 4.159 9 C -0.015 4.015 10 N -0.835 5.835 11 S 2.712 3.288 12 O -0.980 6.980 13 O -0.979 6.979 14 C -0.719 4.719 15 C -0.056 4.056 16 C -0.566 4.566 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.579 5.579 20 Si 0.747 3.253 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.174 1.174 24 C -0.015 4.015 25 C -0.159 4.159 26 C -0.103 4.103 27 C -0.232 4.232 28 H 0.136 0.864 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.169 0.831 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.157 0.843 39 H 0.157 0.843 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.115 0.885 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.073 0.927 47 H 0.141 0.859 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.968 -31.378 -0.024 32.634 hybrid contribution -0.201 1.105 0.012 1.123 sum -9.169 -30.273 -0.011 31.631 Atomic orbital electron populations 1.23283 0.76805 1.05395 1.01962 1.86031 1.23158 1.27144 1.88887 1.19275 0.92963 0.84387 0.97360 1.20668 0.91401 0.99453 1.06579 1.21133 1.00900 0.90279 0.96924 1.19871 0.93370 0.95269 1.02910 1.20058 1.00808 0.90167 0.94428 1.21927 1.00275 0.94920 0.98772 1.21701 1.01930 0.93832 0.84077 1.57561 1.83110 1.29687 1.13151 1.04650 0.76862 0.74414 0.72875 1.93495 1.71888 1.86285 1.46299 1.93495 1.71653 1.86299 1.46472 1.30349 1.20169 1.09056 1.12331 1.19371 0.97518 0.91074 0.97679 1.21183 0.92900 0.91242 1.51309 0.93200 1.25871 1.00709 0.97908 0.93999 1.70012 1.30990 1.05210 1.51653 0.86035 0.80581 0.78800 0.79888 1.18515 1.19842 1.17431 1.21706 1.01908 0.93839 0.84089 1.21925 1.00275 0.94909 0.98777 1.20966 0.94751 0.97060 0.97486 1.21392 1.00750 0.92217 1.08795 0.86385 0.92084 0.92093 0.84443 0.83089 0.88037 0.89094 0.92739 0.89694 0.88520 0.84310 0.84334 0.95141 0.95241 0.92124 0.88539 0.89685 0.89098 0.92749 0.85934 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -5.70 10.50 -92.46 -0.97 -6.67 16 3 C 0.11 1.84 6.69 22.50 0.15 1.99 16 4 C -0.16 -2.55 9.99 22.36 0.22 -2.33 16 5 C -0.07 -1.01 9.66 22.25 0.22 -0.80 16 6 C -0.11 -1.73 4.78 -19.85 -0.09 -1.82 16 7 C -0.04 -0.50 2.32 -11.51 -0.03 -0.53 16 8 C -0.12 -1.93 5.15 30.67 0.16 -1.77 16 9 C 0.11 2.02 6.43 86.36 0.55 2.57 16 10 N -1.00 -22.78 3.23 -512.99 -1.66 -24.44 16 11 S 2.61 84.88 5.45 -56.49 -0.31 84.57 16 12 O -0.99 -37.25 16.59 -127.65 -2.12 -39.36 16 13 O -0.99 -37.07 16.59 -127.65 -2.12 -39.19 16 14 C -0.59 -20.78 6.12 71.98 0.44 -20.34 16 15 C -0.02 -0.82 4.05 29.85 0.12 -0.70 16 16 C -0.53 -29.81 9.66 25.60 0.25 -29.56 16 17 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 18 C 0.01 0.80 5.47 84.65 0.46 1.26 16 19 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 20 Si 0.92 43.94 27.47 68.60 1.88 45.82 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.25 -11.35 6.54 99.48 0.65 -10.70 16 24 C 0.11 2.02 6.42 86.36 0.55 2.58 16 25 C -0.12 -1.93 5.16 30.67 0.16 -1.77 16 26 C -0.08 -1.43 8.73 22.26 0.19 -1.23 16 27 C -0.21 -3.50 9.04 22.37 0.20 -3.30 16 28 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.49 7.66 -2.39 -0.02 0.48 16 30 H 0.06 0.49 7.66 -2.39 -0.02 0.48 16 31 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.15 1.30 7.94 -2.91 -0.02 1.28 16 33 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 35 H 0.05 1.04 7.42 -2.39 -0.02 1.03 16 36 H 0.08 1.79 6.86 -2.39 -0.02 1.77 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 39 H 0.14 4.43 8.14 -2.39 -0.02 4.41 16 40 H 0.03 1.42 7.20 -2.38 -0.02 1.41 16 41 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.79 6.87 -2.39 -0.02 1.78 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.05 1.04 7.45 -2.39 -0.02 1.03 16 47 H 0.12 2.05 7.13 -2.91 -0.02 2.03 16 48 H 0.14 1.79 6.30 -2.91 -0.02 1.77 16 Total: -1.00 -76.25 393.30 0.58 -75.68 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.89 Total: 15.40 kcal Atomic # 6 Polarization: -59.12 SS G_CDS: 4.67 Total: -54.45 kcal Atomic # 7 Polarization: -80.44 SS G_CDS: -1.36 Total: -81.80 kcal Atomic # 8 Polarization: -80.02 SS G_CDS: -5.21 Total: -85.22 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Atomic # 16 Polarization: 84.88 SS G_CDS: -0.31 Total: 84.57 kcal Total: -76.25 0.58 -75.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074969971.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.773 kcal (2) G-P(sol) polarization free energy of solvation -76.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds