Wall clock time and date at job start Tue Mar 31 2020 05:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38277 * 119.96556 * 2 1 4 4 C 1.38250 * 120.11984 * 180.02562 * 3 2 1 5 5 C 1.38257 * 120.04315 * 359.75772 * 4 3 2 6 6 Cl 1.73594 * 120.03994 * 180.27645 * 5 4 3 7 7 C 1.38816 * 119.92161 * 0.51526 * 5 4 3 8 8 O 1.35926 * 120.05892 * 179.73680 * 7 5 4 9 9 C 1.42903 * 116.99728 * 175.56489 * 8 7 5 10 10 H 1.08994 * 109.47451 * 324.90052 * 9 8 7 11 11 C 1.53005 * 109.46722 * 84.89944 * 9 8 7 12 12 C 1.50700 * 109.46924 * 204.89495 * 9 8 7 13 13 O 1.21282 * 120.00207 * 352.44115 * 12 9 8 14 14 N 1.34777 * 120.00052 * 172.43744 * 12 9 8 15 15 C 1.46957 * 120.59583 * 184.98197 * 14 12 9 16 16 C 1.53819 * 108.39794 * 124.76113 * 15 14 12 17 17 N 1.46964 * 108.57969 * 49.63526 * 16 15 14 18 18 C 1.36938 * 120.59113 * 124.66978 * 17 16 15 19 19 H 1.07997 * 119.99666 * 209.98870 * 18 17 16 20 20 C 1.38810 * 119.99810 * 29.98916 * 18 17 16 21 21 N 1.31621 * 120.00326 * 15.67597 * 20 18 17 22 22 Si 1.86807 * 119.99810 * 195.67233 * 20 18 17 23 23 H 1.48506 * 109.46631 * 90.00224 * 22 20 18 24 24 H 1.48497 * 109.47156 * 210.00067 * 22 20 18 25 25 H 1.48500 * 109.47052 * 330.00722 * 22 20 18 26 26 C 1.46966 * 118.81250 * 304.65080 * 17 16 15 27 27 C 1.46972 * 120.58945 * 5.26497 * 14 12 9 28 28 C 1.38160 * 119.95929 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47353 * 269.98288 * 1 2 3 30 30 H 1.09007 * 109.46881 * 29.98106 * 1 2 3 31 31 H 1.09000 * 109.47620 * 149.98101 * 1 2 3 32 32 H 1.07996 * 119.94098 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.97653 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47190 * 303.29165 * 11 9 8 35 35 H 1.09003 * 109.47035 * 63.29102 * 11 9 8 36 36 H 1.08995 * 109.46778 * 183.29080 * 11 9 8 37 37 H 1.09004 * 109.61038 * 244.54315 * 15 14 12 38 38 H 1.09004 * 109.61164 * 5.05215 * 15 14 12 39 39 H 1.09000 * 109.73865 * 289.84884 * 16 15 14 40 40 H 1.08999 * 109.53306 * 169.30459 * 16 15 14 41 41 H 0.96994 * 119.99943 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.60910 * 295.48036 * 26 17 16 43 43 H 1.09001 * 109.74964 * 175.05200 * 26 17 16 44 44 H 1.08994 * 109.60942 * 354.94312 * 27 14 12 45 45 H 1.09000 * 109.61018 * 115.45988 * 27 14 12 46 46 H 1.07996 * 120.01934 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5801 1.2016 -0.0005 5 6 4.2755 0.0067 0.0040 6 17 6.0114 0.0115 0.0106 7 6 3.5840 -1.1969 -0.0017 8 8 4.2649 -2.3733 -0.0027 9 6 3.4908 -3.5710 0.0897 10 1 2.6268 -3.3966 0.7309 11 6 3.0158 -3.9802 -1.3060 12 6 4.3369 -4.6720 0.6752 13 8 5.5231 -4.4947 0.8554 14 7 3.7755 -5.8538 0.9987 15 6 4.5631 -6.8973 1.6700 16 6 3.8362 -7.2961 2.9656 17 7 2.4271 -7.5666 2.6477 18 6 1.8567 -8.7674 2.9763 19 1 1.0559 -9.1680 2.3725 20 6 2.3077 -9.4696 4.0855 21 7 3.0493 -8.8657 4.9899 22 14 1.8621 -11.2716 4.2948 23 1 2.8987 -12.1160 3.6484 24 1 1.7886 -11.5986 5.7414 25 1 0.5450 -11.5326 3.6606 26 6 1.6410 -6.5252 1.9713 27 6 2.3663 -6.1244 0.6808 28 6 2.1969 -1.1970 -0.0005 29 1 -0.3634 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6561 2.1323 0.0004 33 1 4.1172 2.1386 -0.0001 34 1 2.4529 -3.1607 -1.7529 35 1 3.8789 -4.2111 -1.9303 36 1 2.3772 -4.8601 -1.2289 37 1 4.6536 -7.7648 1.0162 38 1 5.5540 -6.5110 1.9086 39 1 3.8985 -6.4823 3.6881 40 1 4.2964 -8.1929 3.3804 41 1 3.3641 -9.3563 5.7651 42 1 1.5471 -5.6566 2.6231 43 1 0.6503 -6.9102 1.7297 44 1 1.9062 -5.2275 0.2660 45 1 2.3040 -6.9381 -0.0417 46 1 1.6565 -2.1321 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075144494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:13 Heat of formation + Delta-G solvation = -16.210268 kcal Electronic energy + Delta-G solvation = -29372.933427 eV Core-core repulsion = 25290.085073 eV Total energy + Delta-G solvation = -4082.848353 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.89380 -39.61251 -37.88536 -36.72198 -36.51281 -34.17313 -32.98016 -32.05538 -31.24400 -30.36534 -29.88030 -27.14759 -27.10012 -25.00412 -23.67247 -23.13179 -22.42495 -21.79269 -20.47349 -18.92923 -18.33819 -17.21483 -16.73175 -16.40739 -15.96398 -15.86430 -15.34276 -14.89485 -14.70123 -14.52896 -14.01934 -13.98340 -13.87754 -13.76573 -13.56283 -13.39816 -13.23486 -13.00523 -12.76614 -12.43430 -12.37218 -12.25218 -11.86541 -11.64803 -11.45786 -11.27821 -11.26637 -11.04779 -10.86559 -10.85286 -10.81035 -10.61435 -10.31420 -10.04761 -9.91301 -9.40875 -9.02326 -8.65078 -8.36609 -8.32159 -6.76634 -5.90367 -3.38584 0.85406 1.06015 2.09847 2.55144 2.80435 3.30996 3.31579 3.37856 3.39320 3.55042 4.32815 4.39225 4.42881 4.50890 4.58474 4.75636 4.77423 4.89754 5.07945 5.14027 5.20080 5.27212 5.28591 5.33656 5.37782 5.41162 5.59788 5.64385 5.66648 5.74154 5.81425 5.87891 5.91166 6.04340 6.20208 6.24203 6.29056 6.37029 6.40692 6.59264 6.74275 7.06482 7.18663 7.47940 7.67036 7.74908 8.31124 8.41658 9.06002 9.67950 10.25102 11.17068 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.016732 B = 0.002556 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.032111 B =10952.528609 C =11815.290335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.040 4.040 3 C -0.152 4.152 4 C -0.069 4.069 5 C -0.076 4.076 6 Cl -0.054 7.054 7 C 0.149 3.851 8 O -0.271 6.271 9 C 0.066 3.934 10 H 0.098 0.902 11 C -0.184 4.184 12 C 0.515 3.485 13 O -0.528 6.528 14 N -0.591 5.591 15 C 0.089 3.911 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.261 4.261 19 H 0.068 0.932 20 C 0.006 3.994 21 N -0.900 5.900 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.278 1.278 26 C 0.130 3.870 27 C 0.079 3.921 28 C -0.204 4.204 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.100 0.900 41 H 0.256 0.744 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 18.356 -12.950 22.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.041 4.041 3 C -0.170 4.170 4 C -0.088 4.088 5 C -0.103 4.103 6 Cl -0.026 7.026 7 C 0.102 3.898 8 O -0.183 6.183 9 C 0.007 3.993 10 H 0.116 0.884 11 C -0.241 4.241 12 C 0.300 3.700 13 O -0.404 6.404 14 N -0.325 5.325 15 C -0.034 4.034 16 C 0.033 3.967 17 N -0.313 5.313 18 C -0.390 4.390 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.002 3.998 27 C -0.046 4.046 28 C -0.223 4.223 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.043 0.957 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.041 0.959 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.426 18.302 -12.680 22.527 hybrid contribution -0.296 -0.997 0.253 1.070 sum -3.722 17.305 -12.427 21.627 Atomic orbital electron populations 1.20856 0.90440 1.03199 1.02960 1.19805 0.96438 0.92256 0.95555 1.20882 0.93164 0.97954 1.05025 1.20893 0.94156 0.96038 0.97682 1.20193 0.85745 0.92221 1.12162 1.98382 1.08277 1.98850 1.97043 1.18752 0.90373 0.85537 0.95177 1.86311 1.34072 1.10970 1.86899 1.22281 0.94299 0.83921 0.98847 0.88430 1.22549 1.03135 1.03402 0.95008 1.19854 0.88024 0.82994 0.79118 1.90709 1.15276 1.80654 1.53764 1.47942 1.12252 1.14171 1.58181 1.22671 0.95492 0.88603 0.96642 1.21279 0.84242 1.00788 0.90371 1.43967 1.06027 1.12804 1.68463 1.19172 1.18405 0.95004 1.06461 0.91479 1.25146 1.00194 0.99152 0.94807 1.70001 1.38884 1.35042 1.10378 0.86248 0.78297 0.84929 0.76991 1.21275 1.21670 1.20356 1.21292 0.94583 0.92666 0.91233 1.22674 0.81194 1.00481 1.00221 1.21174 0.92027 0.99601 1.09486 0.90478 0.91104 0.91104 0.85057 0.84377 0.90802 0.90605 0.89111 0.91870 0.90005 0.95707 0.88232 0.93347 0.95921 0.91323 0.90655 0.91025 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.04 -0.35 5.88 -104.64 -0.62 -0.97 16 3 C -0.15 -1.27 9.70 -39.56 -0.38 -1.65 16 4 C -0.07 -0.66 9.83 -39.57 -0.39 -1.05 16 5 C -0.08 -0.94 6.33 -39.36 -0.25 -1.19 16 6 Cl -0.05 -0.73 28.50 -51.86 -1.48 -2.20 16 7 C 0.15 1.94 6.58 -39.19 -0.26 1.68 16 8 O -0.27 -4.16 8.80 -39.30 -0.35 -4.51 16 9 C 0.07 0.91 1.81 -27.88 -0.05 0.85 16 10 H 0.10 1.17 5.68 -51.93 -0.29 0.88 16 11 C -0.18 -1.92 8.72 37.16 0.32 -1.59 16 12 C 0.51 9.13 7.10 -10.99 -0.08 9.05 16 13 O -0.53 -11.42 15.94 -14.24 -0.23 -11.65 16 14 N -0.59 -10.36 2.94 -172.21 -0.51 -10.86 16 15 C 0.09 1.75 6.61 -3.37 -0.02 1.73 16 16 C 0.16 3.70 5.50 -3.36 -0.02 3.69 16 17 N -0.59 -13.85 2.96 -171.76 -0.51 -14.35 16 18 C -0.26 -6.73 9.57 -15.06 -0.14 -6.87 16 19 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 20 C 0.01 0.17 4.94 -17.43 -0.09 0.09 16 21 N -0.90 -25.25 11.22 55.49 0.62 -24.63 16 22 Si 0.91 20.81 29.58 -169.99 -5.03 15.78 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.13 2.41 6.67 -3.60 -0.02 2.38 16 27 C 0.08 1.17 5.42 -3.59 -0.02 1.15 16 28 C -0.20 -2.13 7.89 -39.44 -0.31 -2.44 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 33 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.07 0.64 7.04 -51.93 -0.37 0.27 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.82 5.31 -51.93 -0.28 0.54 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.64 7.02 -51.93 -0.36 1.28 16 39 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 2.56 6.07 -51.93 -0.32 2.25 16 41 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 1.19 7.94 -51.93 -0.41 0.77 16 44 H 0.08 0.84 4.30 -51.93 -0.22 0.62 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.14 1.23 5.52 -52.49 -0.29 0.94 16 LS Contribution 380.03 15.07 5.73 5.73 Total: -1.00 -32.22 380.03 -10.02 -42.24 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.31 Total: -0.04 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -1.96 Total: 4.49 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.39 Total: -49.85 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.57 Total: -16.15 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.22 -10.02 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075144494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.030 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds