Wall clock time and date at job start Tue Mar 31 2020 05:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38272 * 119.96349 * 2 1 4 4 C 1.38252 * 120.12325 * 180.27827 * 3 2 1 5 5 C 1.38258 * 120.03694 * 0.02562 * 4 3 2 6 6 Cl 1.73598 * 120.03853 * 180.02562 * 5 4 3 7 7 C 1.38821 * 119.92676 * 359.97438 * 5 4 3 8 8 O 1.35925 * 120.05756 * 179.97438 * 7 5 4 9 9 C 1.42902 * 116.99486 * 184.16466 * 8 7 5 10 10 H 1.08996 * 109.47363 * 35.68133 * 9 8 7 11 11 C 1.53002 * 109.47046 * 275.67699 * 9 8 7 12 12 C 1.50701 * 109.47045 * 155.67649 * 9 8 7 13 13 O 1.21280 * 119.99658 * 5.00382 * 12 9 8 14 14 N 1.34774 * 120.00234 * 184.99827 * 12 9 8 15 15 C 1.46967 * 120.58935 * 359.72009 * 14 12 9 16 16 C 1.53812 * 108.39552 * 124.76036 * 15 14 12 17 17 N 1.46964 * 108.58057 * 49.63432 * 16 15 14 18 18 C 1.36940 * 120.59468 * 124.62393 * 17 16 15 19 19 H 1.07995 * 120.00301 * 213.74187 * 18 17 16 20 20 C 1.38815 * 119.99821 * 33.74874 * 18 17 16 21 21 N 1.31625 * 120.00232 * 17.17065 * 20 18 17 22 22 Si 1.86802 * 119.99966 * 197.17431 * 20 18 17 23 23 H 1.48502 * 109.47310 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47370 * 119.99971 * 22 20 18 25 25 H 1.48500 * 109.46999 * 239.99808 * 22 20 18 26 26 C 1.46964 * 118.81340 * 304.64839 * 17 16 15 27 27 C 1.46958 * 120.59495 * 180.02562 * 14 12 9 28 28 C 1.38149 * 119.95903 * 180.27607 * 2 1 3 29 29 H 1.08999 * 109.47050 * 269.72783 * 1 2 3 30 30 H 1.09006 * 109.46670 * 29.72614 * 1 2 3 31 31 H 1.09000 * 109.47032 * 149.72216 * 1 2 3 32 32 H 1.08000 * 119.94453 * 0.25842 * 3 2 1 33 33 H 1.07997 * 119.98359 * 180.02562 * 4 3 2 34 34 H 1.08999 * 109.47149 * 179.97438 * 11 9 8 35 35 H 1.08992 * 109.47006 * 300.00113 * 11 9 8 36 36 H 1.08997 * 109.47128 * 60.00231 * 11 9 8 37 37 H 1.09002 * 109.61118 * 244.53894 * 15 14 12 38 38 H 1.08995 * 109.61382 * 5.05685 * 15 14 12 39 39 H 1.09001 * 109.74417 * 289.84931 * 16 15 14 40 40 H 1.09002 * 109.53635 * 169.30004 * 16 15 14 41 41 H 0.96989 * 119.99957 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.61004 * 295.48338 * 26 17 16 43 43 H 1.09005 * 109.60857 * 174.96997 * 26 17 16 44 44 H 1.08994 * 109.61574 * 354.94659 * 27 14 12 45 45 H 1.09000 * 109.61015 * 115.46402 * 27 14 12 46 46 H 1.08007 * 120.02615 * 359.74750 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1979 0.0000 4 6 3.5801 1.2018 -0.0058 5 6 4.2755 0.0068 -0.0122 6 17 6.0114 0.0116 -0.0188 7 6 3.5840 -1.1969 -0.0122 8 8 4.2649 -2.3733 -0.0189 9 6 3.4903 -3.5706 -0.1110 10 1 2.6283 -3.3971 -0.7550 11 6 3.0112 -3.9766 1.2842 12 6 4.3374 -4.6734 -0.6919 13 8 5.5145 -4.4817 -0.9124 14 7 3.7869 -5.8726 -0.9662 15 6 2.3634 -6.1210 -0.6983 16 6 1.7010 -6.6017 -2.0007 17 7 2.5149 -7.6863 -2.5673 18 6 1.9558 -8.9051 -2.8452 19 1 2.5401 -9.8060 -2.7305 20 6 0.6379 -8.9825 -3.2744 21 7 0.0322 -7.9092 -3.7366 22 14 -0.2759 -10.6098 -3.1959 23 1 0.6215 -11.6553 -2.6419 24 1 -1.4681 -10.4665 -2.3223 25 1 -0.7073 -11.0016 -4.5618 26 6 3.9397 -7.4397 -2.8299 27 6 4.6009 -6.9574 -1.5323 28 6 2.1969 -1.1969 -0.0058 29 1 -0.3633 -0.0049 1.0276 30 1 -0.3633 0.8925 -0.5096 31 1 -0.3633 -0.8875 -0.5181 32 1 1.6561 2.1323 0.0042 33 1 4.1172 2.1387 -0.0054 34 1 2.4200 -4.8896 1.2139 35 1 3.8733 -4.1501 1.9281 36 1 2.3986 -3.1789 1.7043 37 1 2.2640 -6.8875 0.0703 38 1 1.8880 -5.1993 -0.3630 39 1 1.6447 -5.7771 -2.7113 40 1 0.6985 -6.9711 -1.7849 41 1 -0.8887 -7.9632 -4.0362 42 1 4.0428 -6.6747 -3.5995 43 1 4.4156 -8.3625 -3.1618 44 1 5.6035 -6.5882 -1.7479 45 1 4.6568 -7.7819 -0.8217 46 1 1.6566 -2.1321 -0.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075144498.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:17 Heat of formation + Delta-G solvation = -19.133109 kcal Electronic energy + Delta-G solvation = -29438.113429 eV Core-core repulsion = 25355.138332 eV Total energy + Delta-G solvation = -4082.975097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 352.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.86961 -39.61014 -37.86733 -36.71098 -36.49679 -34.12171 -32.99468 -32.19967 -30.98055 -30.31824 -30.02656 -27.14164 -27.05266 -24.97877 -23.67644 -23.10377 -22.44688 -21.75818 -20.48274 -18.91415 -18.30087 -17.27701 -16.67874 -16.33480 -15.90209 -15.87977 -15.42468 -14.81267 -14.71102 -14.50006 -14.06428 -13.93543 -13.88822 -13.80294 -13.43963 -13.37980 -13.19119 -12.98638 -12.74410 -12.42288 -12.34087 -12.22124 -11.82467 -11.61139 -11.49583 -11.36464 -11.24643 -11.01889 -10.90732 -10.86444 -10.82305 -10.53377 -10.35574 -10.13958 -9.89972 -9.41834 -8.99196 -8.67094 -8.36689 -8.31002 -6.73463 -5.94512 -3.43514 0.88622 1.09134 2.11397 2.56952 2.79124 3.27417 3.34730 3.36694 3.38668 3.55495 4.35578 4.39345 4.46463 4.54885 4.62921 4.79204 4.82018 4.93253 5.13223 5.17511 5.24759 5.25231 5.32646 5.39314 5.42539 5.46862 5.63496 5.71426 5.74287 5.84132 5.85009 5.89440 5.91725 5.98549 6.11375 6.22757 6.24397 6.33329 6.41294 6.71266 6.82412 7.02772 7.12341 7.25393 7.67468 7.74146 8.30979 8.40007 9.03842 9.65056 10.25624 11.13159 Molecular weight = 352.13amu Principal moments of inertia in cm(-1) A = 0.014649 B = 0.002756 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.952521 B =10159.012128 C =11498.936672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.039 4.039 3 C -0.152 4.152 4 C -0.069 4.069 5 C -0.076 4.076 6 Cl -0.056 7.056 7 C 0.149 3.851 8 O -0.272 6.272 9 C 0.067 3.933 10 H 0.100 0.900 11 C -0.183 4.183 12 C 0.516 3.484 13 O -0.531 6.531 14 N -0.591 5.591 15 C 0.071 3.929 16 C 0.161 3.839 17 N -0.589 5.589 18 C -0.262 4.262 19 H 0.066 0.934 20 C 0.010 3.990 21 N -0.897 5.897 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.131 3.869 27 C 0.098 3.902 28 C -0.204 4.204 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.026 0.974 40 H 0.091 0.909 41 H 0.255 0.745 42 H 0.024 0.976 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.065 0.935 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 16.610 10.659 19.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.170 4.170 4 C -0.088 4.088 5 C -0.103 4.103 6 Cl -0.027 7.027 7 C 0.102 3.898 8 O -0.183 6.183 9 C 0.007 3.993 10 H 0.117 0.883 11 C -0.241 4.241 12 C 0.302 3.698 13 O -0.408 6.408 14 N -0.325 5.325 15 C -0.053 4.053 16 C 0.034 3.966 17 N -0.312 5.312 18 C -0.391 4.391 19 H 0.084 0.916 20 C -0.190 4.190 21 N -0.540 5.540 22 Si 0.732 3.268 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.216 1.216 26 C 0.004 3.996 27 C -0.026 4.026 28 C -0.222 4.222 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.044 0.956 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.083 0.917 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.031 16.644 10.459 19.763 hybrid contribution -0.737 -0.850 -0.068 1.127 sum 1.294 15.794 10.392 18.950 Atomic orbital electron populations 1.20865 0.90404 1.03476 1.02792 1.19812 0.96479 0.92239 0.95438 1.20884 0.93159 0.97955 1.05027 1.20885 0.94149 0.96014 0.97764 1.20180 0.85639 0.92215 1.12300 1.98377 1.08388 1.98854 1.97067 1.18744 0.90365 0.85506 0.95210 1.86298 1.34052 1.11006 1.86959 1.22255 0.94276 0.83837 0.98952 0.88292 1.22528 1.03029 1.03597 0.94916 1.19850 0.87876 0.83057 0.79039 1.90699 1.16043 1.81003 1.53051 1.47914 1.11286 1.11379 1.61885 1.23005 0.80007 1.00348 1.01904 1.21169 0.95558 0.90724 0.89131 1.43917 1.03947 1.11400 1.71903 1.19175 0.95973 0.84203 1.39765 0.91636 1.25207 0.99256 0.97090 0.97436 1.70040 1.12398 1.28337 1.43251 0.86239 0.79731 0.83445 0.77429 1.20078 1.21409 1.21581 1.21344 0.86821 0.98707 0.92713 1.22270 0.94878 0.88183 0.97241 1.21203 0.92042 0.99681 1.09316 0.90613 0.91053 0.90899 0.85062 0.84400 0.89067 0.90664 0.90807 0.91182 0.90921 0.95581 0.89125 0.93490 0.95767 0.91295 0.89816 0.91653 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.01 36.01 0.36 -0.45 16 2 C -0.04 -0.37 5.88 -104.64 -0.62 -0.98 16 3 C -0.15 -1.33 9.69 -39.56 -0.38 -1.71 16 4 C -0.07 -0.69 9.83 -39.57 -0.39 -1.08 16 5 C -0.08 -0.96 6.33 -39.36 -0.25 -1.21 16 6 Cl -0.06 -0.75 28.50 -51.86 -1.48 -2.22 16 7 C 0.15 2.00 6.59 -39.19 -0.26 1.74 16 8 O -0.27 -4.23 8.80 -39.37 -0.35 -4.58 16 9 C 0.07 0.94 1.81 -27.88 -0.05 0.89 16 10 H 0.10 1.27 5.62 -51.93 -0.29 0.98 16 11 C -0.18 -2.04 8.73 37.16 0.32 -1.71 16 12 C 0.52 9.11 7.12 -10.99 -0.08 9.03 16 13 O -0.53 -11.23 15.91 -14.30 -0.23 -11.45 16 14 N -0.59 -10.26 2.94 -172.20 -0.51 -10.77 16 15 C 0.07 1.16 5.22 -3.36 -0.02 1.14 16 16 C 0.16 3.42 5.50 -3.37 -0.02 3.40 16 17 N -0.59 -13.81 2.93 -171.74 -0.50 -14.31 16 18 C -0.26 -6.74 9.51 -15.06 -0.14 -6.88 16 19 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 20 C 0.01 0.26 4.86 -17.43 -0.08 0.18 16 21 N -0.90 -24.52 11.61 55.49 0.64 -23.87 16 22 Si 0.90 20.45 29.59 -169.99 -5.03 15.42 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.13 2.68 6.67 -3.58 -0.02 2.66 16 27 C 0.10 1.75 6.59 -3.58 -0.02 1.73 16 28 C -0.20 -2.25 7.88 -39.44 -0.31 -2.57 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.09 0.93 5.37 -51.93 -0.28 0.65 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.69 6.93 -51.93 -0.36 0.33 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.07 0.95 4.56 -51.93 -0.24 0.71 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.09 2.10 6.42 -51.93 -0.33 1.77 16 41 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 44 H 0.08 1.50 6.99 -51.93 -0.36 1.13 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.14 1.37 5.45 -52.48 -0.29 1.08 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -31.52 380.46 -10.01 -41.52 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.33 Total: 0.35 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.96 Total: 4.17 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.37 Total: -48.95 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.57 Total: -16.03 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.48 Total: -2.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.52 -10.01 -41.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075144498.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.390 kcal (2) G-P(sol) polarization free energy of solvation -31.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds